BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G10460.1
Length=999
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919828 jgi|Araly1|919828|scaffold_101109.1 979 0.0
> Ahg919828 jgi|Araly1|919828|scaffold_101109.1
Length=659
Score = 979 bits (530), Expect = 0.0
Identities = 616/658 (94%), Gaps = 4/658 (1%)
Strand=Plus/Plus
Query 109 TAACGCTCACACTTCTTATGGGTCGGGTTAAATCCGACCCGGACCCGCTCCAAGACTACT 168
||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 4 TAACGTTCACACTTCTGATGGGTCGGGTTAAATCCGACCCGGACCCGCTCCAAGACTACT 63
Query 169 GCGTTTCTCCTCCTCCTTCATCTCACCAACAAATCTTCCTCAACGGCAAACTTTGCAAAG 228
| ||||||||| |||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 64 GTGTTTCTCCTTCTCCTTCATCACACCAACAAATCTTCCTCAACGGCGTACTTTGCAAAG 123
Query 229 ATCCGACACAAGCCAGCGTCTCTGACTTTTCAACATCCGCATTATCCAGACCCGGAAACA 288
|||||| | |||||| |||||| |||||| |||| |||||||| ||||||||||||||||
Sbjct 124 ATCCGAAAGAAGCCACCGTCTCCGACTTTACAACCTCCGCATTGTCCAGACCCGGAAACA 183
Query 289 CTAAGACCAAACCGTTTATGATCAACGTCACTGTGACCACAACCGCCAACCTCCCAGGTC 348
|| ||||||||||||| |||| |||||||||||| ||||||||||||||||||| |||||
Sbjct 184 CTCAGACCAAACCGTTAATGACCAACGTCACTGTCACCACAACCGCCAACCTCCGAGGTC 243
Query 349 TAAACACAGTGGGCCTTACAATGGCCAGGCTAGACTTCGGAGGCTCTGGTGTTGTCCCAC 408
| |||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 244 TCAACACAATGGGCCTCACAATGGCCAGGCTTGACTTCGGAGGCTCTGGTGTTGTCCCAC 303
Query 409 CGCACGTGCACCCACGCGCCTCCGAAGTGACAGTCTGCCTCGACGGTGTCCTTCTCGTCG 468
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 304 CGCACGTGCACCCACGCGCCTCCGAAGTAACTGTCTGCCTCGACGGTGTCCTTCTCGTCG 363
Query 469 GGTTCGTGGATACGTCGGGTCGGGTCTTTACGCAGGAGCTTCATCCGGGTGAGACATTCG 528
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 364 GGTTCGTGGATACGTCGGGTCGGGTCTTTACCCAGGAGCTTCATCCGGGTGAGACATTCG 423
Query 529 TGTTTCCCAAAGGTTTGATCCATTTTCTATATAACATTGATACGGTGAGCTCAGCTTTGG 588
||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 424 TGTTTCCCAAAGGGTTGATTCATTTTCTATATAATATTGATACGGTGAGCTCAGCTTTGG 483
Query 589 CAGTCTCTGGGCTGAGTAGTCAGAATCCTGGGACTCAGATTGTATCTTTGTCGTCTTTCA 648
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 484 CAGTCTCTGGGCTGAATAGTCAGAATCCTGGGACTCAGATTGTGTCTTTGTCGTCTTTCA 543
Query 649 TTTCAAAGCCTCCGTTTCTGGTAGAGGTTTTGAAGAGTGCTTATGATATCAACGGCCAGG 708
|| ||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||
Sbjct 544 TTCCAAAGCCTCCGTTTCTGCAAGAGGTTTTGAAGAGCGCTTTTGATATCAACGGCCAGG 603
Query 709 ATGTTGCTAGGATCCGCAAAAGTCTTGAAGGCTAAAAATGCTAAAAGCC--TAAAACT 764
|||||||||||||||||||||||||| || ||||||| |||||||| || |||||||
Sbjct 604 ATGTTGCTAGGATCCGCAAAAGTCTTCAACGCTAAAA-TGCTAAAA-CCAGTAAAACT 659
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37131721158
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5