BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G10460.1 Length=999 Score E Sequences producing significant alignments: (Bits) Value Ahg919828 jgi|Araly1|919828|scaffold_101109.1 979 0.0 > Ahg919828 jgi|Araly1|919828|scaffold_101109.1 Length=659 Score = 979 bits (530), Expect = 0.0 Identities = 616/658 (94%), Gaps = 4/658 (1%) Strand=Plus/Plus Query 109 TAACGCTCACACTTCTTATGGGTCGGGTTAAATCCGACCCGGACCCGCTCCAAGACTACT 168 ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 4 TAACGTTCACACTTCTGATGGGTCGGGTTAAATCCGACCCGGACCCGCTCCAAGACTACT 63 Query 169 GCGTTTCTCCTCCTCCTTCATCTCACCAACAAATCTTCCTCAACGGCAAACTTTGCAAAG 228 | ||||||||| |||||||||| |||||||||||||||||||||||| ||||||||||| Sbjct 64 GTGTTTCTCCTTCTCCTTCATCACACCAACAAATCTTCCTCAACGGCGTACTTTGCAAAG 123 Query 229 ATCCGACACAAGCCAGCGTCTCTGACTTTTCAACATCCGCATTATCCAGACCCGGAAACA 288 |||||| | |||||| |||||| |||||| |||| |||||||| |||||||||||||||| Sbjct 124 ATCCGAAAGAAGCCACCGTCTCCGACTTTACAACCTCCGCATTGTCCAGACCCGGAAACA 183 Query 289 CTAAGACCAAACCGTTTATGATCAACGTCACTGTGACCACAACCGCCAACCTCCCAGGTC 348 || ||||||||||||| |||| |||||||||||| ||||||||||||||||||| ||||| Sbjct 184 CTCAGACCAAACCGTTAATGACCAACGTCACTGTCACCACAACCGCCAACCTCCGAGGTC 243 Query 349 TAAACACAGTGGGCCTTACAATGGCCAGGCTAGACTTCGGAGGCTCTGGTGTTGTCCCAC 408 | |||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||| Sbjct 244 TCAACACAATGGGCCTCACAATGGCCAGGCTTGACTTCGGAGGCTCTGGTGTTGTCCCAC 303 Query 409 CGCACGTGCACCCACGCGCCTCCGAAGTGACAGTCTGCCTCGACGGTGTCCTTCTCGTCG 468 |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| Sbjct 304 CGCACGTGCACCCACGCGCCTCCGAAGTAACTGTCTGCCTCGACGGTGTCCTTCTCGTCG 363 Query 469 GGTTCGTGGATACGTCGGGTCGGGTCTTTACGCAGGAGCTTCATCCGGGTGAGACATTCG 528 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 364 GGTTCGTGGATACGTCGGGTCGGGTCTTTACCCAGGAGCTTCATCCGGGTGAGACATTCG 423 Query 529 TGTTTCCCAAAGGTTTGATCCATTTTCTATATAACATTGATACGGTGAGCTCAGCTTTGG 588 ||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||| Sbjct 424 TGTTTCCCAAAGGGTTGATTCATTTTCTATATAATATTGATACGGTGAGCTCAGCTTTGG 483 Query 589 CAGTCTCTGGGCTGAGTAGTCAGAATCCTGGGACTCAGATTGTATCTTTGTCGTCTTTCA 648 ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| Sbjct 484 CAGTCTCTGGGCTGAATAGTCAGAATCCTGGGACTCAGATTGTGTCTTTGTCGTCTTTCA 543 Query 649 TTTCAAAGCCTCCGTTTCTGGTAGAGGTTTTGAAGAGTGCTTATGATATCAACGGCCAGG 708 || ||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||| Sbjct 544 TTCCAAAGCCTCCGTTTCTGCAAGAGGTTTTGAAGAGCGCTTTTGATATCAACGGCCAGG 603 Query 709 ATGTTGCTAGGATCCGCAAAAGTCTTGAAGGCTAAAAATGCTAAAAGCC--TAAAACT 764 |||||||||||||||||||||||||| || ||||||| |||||||| || ||||||| Sbjct 604 ATGTTGCTAGGATCCGCAAAAGTCTTCAACGCTAAAA-TGCTAAAA-CCAGTAAAACT 659 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 37131721158 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5