BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G10470.1
Length=1275
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919829 jgi|Araly1|919829|scaffold_101110.1 1225 0.0
> Ahg919829 jgi|Araly1|919829|scaffold_101110.1
Length=821
Score = 1225 bits (663), Expect = 0.0
Identities = 778/831 (94%), Gaps = 17/831 (2%)
Strand=Plus/Plus
Query 178 ACAGTTACTATAAGCTCGTCTATGGCCAGAGACGGTGGTGTTTCTTGTTTACGAAGGTCG 237
||| |||||| || ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 ACACTTACTACAAACTCGTCTATGGCCAGAGACGGTGGTGTTTCTTGTTTACGGAGGTCG 60
Query 238 GAGATGATGAGCGTCGGTGGTATCGGAGGAATTGAATCTGCGCCGTTGGATTTAGATGAA 297
|||||||||| | | ||||||||||||||||||||||||||||||||||||||
Sbjct 61 GAGATGATGA---AC----G--TCGGAGGAATTGAATCTGCGCCGTTGGATTTAGATGAA 111
Query 298 GTTCATGTCTTAGCCGTTGATGACAGTCTCGTTGATCGTATTGTCATCGAGAGATTGCTT 357
||||||||||| ||||| || ||||| ||||||||||| ||||| |||||||||||||||
Sbjct 112 GTTCATGTCTTGGCCGTCGACGACAGCCTCGTTGATCGGATTGTTATCGAGAGATTGCTT 171
Query 358 CGTATTACTTCCTGCAAAGTTACGGCGGTAGATAGTGGATGGCGTGCTCTGGAATTTCTA 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 172 CGTATTACTTCCTGCAAAGTTACGGCGGTAGATAGTGGATGGCGTGCTCTGGAATTTCTA 231
Query 418 GGGTTAGATAATGAGAAAGCTTCTGCTGAATTCGATAGATTGAAAGTTGATTTGATCATC 477
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 232 GGGTTAGATAATGAGAAAGCTTCTGCTGAATTCGATAGTTTGAAAGTTGATTTGATCATC 291
Query 478 ACTGATTACTGTATGCCTGGAATGACTGGTTATGAGCTTCTCAAGAAGATTAAGGAATCG 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 292 ACTGATTACTGTATGCCTGGAATGACTGGTTATGAGCTTCTCAAGAAGATTAAGGAATCG 351
Query 538 TCCAATTTCAGAGAAGTTCCGGTTGTAATCATGTCGTCGGAGAATGTATTGACCAGAATC 597
|| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 352 TCTAATTTCAGAGAAGTTCCGGTTGTAATCATGTCATCGGAGAACGTATTGACCAGAATC 411
Query 598 GACAGATGCCTTGAGGAAGGTGCTCAAGATTTCTTATTGAAACCGGTGAAACTCGCCGAC 657
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 412 GATAGATGCCTTGAGGAAGGTGCTCAAGATTTCTTATTGAAACCGGTGAAACTCGCCGAC 471
Query 658 GTGAAACGTCTGAGAAGTCATTTAACTAAAGACGTTAAACTTTCCAACGGAAACAAACGG 717
|| ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 472 GTTAAACGTCTGAGAAATCACTTAACTAAAGACGTTAAACTTTCCAACGGAAACAAACGG 531
Query 718 AAGCTTCCGGAAGATTCT-AGTTCCGTTAACTCTTCGCTTCCTCCACCGTCACCTCCGTT 776
||||||||||| |||||| | |||||||| ||||||||||||||| |||||| |||||||
Sbjct 532 AAGCTTCCGGATGATTCTGA-TTCCGTTATCTCTTCGCTTCCTCCGCCGTCATCTCCGTT 590
Query 777 GACTATCTCGCCTGAATCGTCGCCGCCGTTGACTGTTTCGACTGAATCGTCGGATTCGTC 836
|||||||||||||||||||||||||||||||||| |||||||||| |||||||| || ||
Sbjct 591 GACTATCTCGCCTGAATCGTCGCCGCCGTTGACTATTTCGACTGAGTCGTCGGACTCTTC 650
Query 837 TCCGCCGTTATCTCCGGTGGAGATCTTTTCCACCTCGCCACTTTCATCTCCGATAGACGA 896
||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 651 TCCGCAGTTATCTCCGGTGGAGATGTTTTCCACCTCGCCACTTTCATCTCCAATAGACGA 710
Query 897 TGAAGATGAT--GACGT-GTTGACG---TCGTCGTCGGAGGAATCGCCGATTCGACGGCA 950
||| |||| | |||| || | || |||||| |||||||||||||||||||||||||
Sbjct 711 TGACGATGTTTTGACGACGTCGCCGGAATCGTCGCCGGAGGAATCGCCGATTCGACGGCA 770
Query 951 GAAGATGAGGAGTCCCGGATTAGATTAGTGGAACTATTCTGGGATGCCGTG 1001
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 771 GAAGATGAGGAGTCCCGGATTAGATTAGTGGAACTATTCTGGGATGCCGTG 821
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47653646250
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5