BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G10480.1
Length=1536
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471161 jgi|Araly1|471161|fgenesh2_kg.1__1115__AT1G10480.1 1110 0.0
> Ahg471161 jgi|Araly1|471161|fgenesh2_kg.1__1115__AT1G10480.1
Length=1222
Score = 1110 bits (601), Expect = 0.0
Identities = 732/794 (92%), Gaps = 13/794 (2%)
Strand=Plus/Plus
Query 35 CACACATATATGTCTATAAATCCGACAATGTCTCGTACTGGCGAAAGTTCTTCAGGTTCG 94
|||||||||||||||||| |||||||||||||||||| || |||||||| ||||| ||
Sbjct 25 CACACATATATGTCTATATCTCCGACAATGTCTCGTACAGGTGAAAGTTCATCAGGCTCA 84
Query 95 TCCTCCGACAAGACGATAAAGCTATTCGGCTTCGAACTCATCAGCGGCAGTCG-TACGCC 153
||||||||||||||||||||||||||||||||||| || |||||||||| ||| | ||||
Sbjct 85 TCCTCCGACAAGACGATAAAGCTATTCGGCTTCGACCTGATCAGCGGCAATCGCT-CGCC 143
Query 154 GGAAATCACGACGGCGGAAAGCGTGAGCTCGTCCACAAACACGACGTCGTTAACAGTGAT 213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 144 GGAAATCACGACGGCGGAAAGCGTGAGCTCGTCCACAAACACGACGTCGTTAACAGTGAT 203
Query 214 GAAAAGACACGAGTGCCAATACTGCGGTAAAGAGTTTGCAAATTCTCAAGCCTTAGGAGG 273
||||||| || ||||||||||| || |||||||| |||||||||||||||||||||||
Sbjct 204 AAAAAGACTTGACTGCCAATACTGTGGCAAAGAGTTCGCAAATTCTCAAGCCTTAGGAGG 263
Query 274 TCACCAAAACGCTCACAAGAAGGAGAGGTTGAAGAAGAAGAGGCTTCAGCTTCAAGCTCG 333
|||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 264 TCACCAAAACGCCCACAAGAAAGAGAGGTTGAAGAAGAAGAGGCTTCAGCTTCAAGCTAG 323
Query 334 GCGAGCCAGCATCGGCTATTATCTCACCAACCACCAACAACCCATAACGACGTCATTTCA 393
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 324 ACGAGCCAGCATCGGCTATTATCTCACCAGCCACCAACAACCCATAACGACGTCATTTCA 383
Query 394 GAGACAATACAAAACGCCGTCGTATTGTGCATTCTCCTCCATGCACGTGAATAATGATCA 453
|||||||||||| || ||||| |||||||| ||||| || ||||||||||||||| ||||
Sbjct 384 GAGACAATACAATACCCCGTCATATTGTGCCTTCTCATCTATGCACGTGAATAATAATCA 443
Query 454 GATGGGTGTGTACAACGAAGATTGGTCGTCGAGGTCGTCGCAGATTAACTTCGGTAATAA 513
|||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||
Sbjct 444 GATGGGTGTGTACAACGAGGAGTGGTCGTCGAGGTCGTCGCAGATTAGCTTCGGTAATAA 503
Query 514 TGACACGTGCCAAGATCTTAATGAACAAAGCGGTGAGATGGGTAAGCTGTACGGTGTTCG 573
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 504 GGACACGTGCCAAGATCTTAATGAACAAAGTGGTGAGATGGGTAAGCTGTACGGTGTACG 563
Query 574 ACCGAACATGATTCAGTTCCAGAGAGATCTGAGTTCTCGTTCTGATCAGATGAGAAGTAT 633
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 564 ACCGAACATGATTCAGTTCCAGAGAGATCTGACTTCTCGTTCTGATCAGATGAGAAGAAT 623
Query 634 TAACTCGCTGGATCTTCATCTAGGTTTTGCCGGAGATGCGGCATAACAAATTAAAGAGAG 693
|| ||||||||||||||||||||||||||||||||| |||| ||||||| |||||
Sbjct 624 CAAGTCGCTGGATCTTCATCTAGGTTTTGCCGGAGATTCGGCTTAACAAAGC---GAGAG 680
Query 694 ATATATGATTAAGATTATATGTACTA-T-AGTGGCGTATTTCATTGGGATCATGAAGGGG 751
|||||||||||||||||||||||||| | | ||| |||||| |||||||||| |||||
Sbjct 681 ATATATGATTAAGATTATATGTACTAATTAATGGTGTATTTTATTGGGATCAGGAAGGA- 739
Query 752 AAAAAACGAGACATATAGTATTCTTGATGCAATTTGAGTTTTGTAATTTATTTAGGTTTA 811
||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||
Sbjct 740 AAAAAACGAGACATA--GTATTCTTGATGCAATTTGAGTTTT--A-TTTATTTAGGTTTA 794
Query 812 TGTATGTTTTCGAA 825
|||||||||| |||
Sbjct 795 TGTATGTTTTTGAA 808
Score = 113 bits (61), Expect = 3e-24
Identities = 71/76 (93%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 1294 GTGCAATTCGTACACGCCTCAATTTGATTTATAGTCAAATTTCAAAAAATTTGTTAGAAA 1353
|||| ||||||||||||||||||||||||||||||||||||||||| | ||| |||||||
Sbjct 1092 GTGCTATTCGTACACGCCTCAATTTGATTTATAGTCAAATTTCAAATATTTTTTTAGAAA 1151
Query 1354 TTTCATCTCAAAAGTT 1369
||||||||| ||||||
Sbjct 1152 TTTCATCTCTAAAGTT 1167
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57516269950
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5