BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G10490.1
Length=3843
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486246 jgi|Araly1|486246|fgenesh2_kg.5__2238__AT3G57940.1 3118 0.0
Ahg312088 jgi|Araly1|312088|fgenesh1_pm.C_scaffold_1000868 2952 0.0
Ahg471163 jgi|Araly1|471163|fgenesh2_kg.1__1117__AT1G10500.1 440 3e-122
> Ahg486246 jgi|Araly1|486246|fgenesh2_kg.5__2238__AT3G57940.1
Length=3318
Score = 3118 bits (1688), Expect = 0.0
Identities = 2637/3092 (85%), Gaps = 78/3092 (3%)
Strand=Plus/Plus
Query 59 AGAATGAGGAAGAAGGTAGACGAACGTATAAGGACTCTGATTGAAAACGGTGTTAAACTT 118
||||||||||||||||| || |||||||| ||||||||||||||||||||||| ||| ||
Sbjct 191 AGAATGAGGAAGAAGGTTGATGAACGTATCAGGACTCTGATTGAAAACGGTGTCAAA-TT 249
Query 119 -AGACACCGTTCCATGTTTGTCATTATTGGTGATAAGGCTCGTGACCAGATAGTTAATCT 177
|||||||||||||||||||| || |||||||| ||| |||||||||||||||| || ||
Sbjct 250 GAGACACCGTTCCATGTTTGTAATCATTGGTGACAAGTCTCGTGACCAGATAGTGAACCT 309
Query 178 TCATCACATTTTGTCAAAATCGGTGGTCAAGTCTAA-CCCAAGTGTGC-TATGGTGCTAC 235
||||| || ||||| || | ||| | |||| ||| ||| ||||| | | |||||||||
Sbjct 310 CCATCATATGTTGTCTAAGGCAGTGATTAAGTGTAATCCC-AGTGT-CTTGTGGTGCTAC 367
Query 236 AAGAATAGACTCGACATTAGCAGTCACAATAAAAAACGTGCTAAGCAGTTGAAGAAGA-T 294
||| | | ||| |||||||||||||| || |||| ||| | |||||| | ||| ||| |
Sbjct 368 AAGGACAAACTTGACATTAGCAGTCATAAGCAAAAGCGTTCGAAGCAGCTCAAG-AGATT 426
Query 295 GAAGGAGAGAGGACAATTAGATCCTGAAAAACTCGACGCTTTCTCTCTTTTTCTTGATGT 354
|| |||||||||||| || ||||| || ||||| ||||||||||| | ||| ||||||||
Sbjct 427 GAGGGAGAGAGGACAGTTGGATCCAGAGAAACTTGACGCTTTCTCGCGTTTGCTTGATGT 486
Query 355 -GGTGGATGTTACTCATTGCTTGTACAAAGATTCTGAAAGAATTCTTGGGAATACTTTTG 413
|| || || ||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 487 GGGAAGA-GTAACTCATTGCTTGTACAAAGATTCTGAACGAATTCTTGGAAATACTTTTG 545
Query 414 GCATCTGCATCTTACAGGATTTTGAAGCTCTAACTCCAAATCTACTAGCAAGAACAATAG 473
|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 546 GCATGTGCATCTTACAGGATTTTGAAGCTTTAACTCCAAATCTACTAGCAAGAACAATAG 605
Query 474 AGACAGTCGAAGGGGGTGGGCTAGTTGTATTATTATTACAATCGCTTGCTTCACTTACTA 533
|||| || ||||| ||||| | ||||||||| |||||| ||| ||| | || |||||||
Sbjct 606 AGACTGTGGAAGGTGGTGGTTTGGTTGTATTAATATTACGATCACTTACATCGCTTACTA 665
Query 534 GTCTCTGCACCATGGTTATGGATGTGCATGATAGATTTCGAACCGAGTCACACTCTGAAG 593
|||| ||||| |||||||||||||| ||||| ||||| ||||| || || || ||||| |
Sbjct 666 GTCTATGCACTATGGTTATGGATGTCCATGACAGATTCCGAACTGAATCGCATTCTGAGG 725
Query 594 CTTCCGGACGTTTCAATGAACGATTTCTGTTGTCACTAGCATCTTGCAAAGCATGCGTTG 653
|| | || ||||||||||| || |||||| | ||||| ||||| ||||||||||| ||||
Sbjct 726 CTGCTGGCCGTTTCAATGAGCGTTTTCTGCTATCACTTGCATCGTGCAAAGCATGTGTTG 785
Query 654 TCATGGATGATGAGTTGAATTTATTGCCACTTTCATCTCATATCAAATCTATCACAAAAG 713
|||||||||||||||||||| ||||||| ||||| || |||||||||||||| || |||
Sbjct 786 TCATGGATGATGAGTTGAATATATTGCCGCTTTCCTCGCATATCAAATCTATTACTCAAG 845
Query 714 TTCCAACA-AAGGAGGATTCGGAAGCGCTTTCTGAGGCAGAACGAGACCTGAAGAGTTTG 772
|||||||| || ||||||| || | ||| ||||||||||| || || ||||||||||||
Sbjct 846 TTCCAACAGAA-AAGGATTCCGAGGGGCTCTCTGAGGCAGAGCGGGATCTGAAGAGTTTG 904
Query 773 AAAGATGCACTAAACGATGATTTTCCTGTTGGTCCTTTAATTAATAAGTGTTGTACATTG 832
||||| | ||||| |||||||||||||||||||| ||||| || || || |||||||||
Sbjct 905 AAAGAAGAACTAAGTGATGATTTTCCTGTTGGTCCGTTAATCAAGAAATGCTGTACATTG 964
Query 833 GATCAGGGTAAAGCTGTTGTCACATTTTTCGATGCAATATTGGATAAGACCCTCCGTAGC 892
||||||||||||||||| ||||||||||| |||||||| ||||||||| | ||||| |||
Sbjct 965 GATCAGGGTAAAGCTGTAGTCACATTTTTTGATGCAATTTTGGATAAGGCTCTCCGCAGC 1024
Query 893 ATAGTTGCTCTGATTGCTAGTCGTGGGCGTGGAAAATCTGCTGCACTTGGTCTAGCTGTT 952
||||||||| ||||||| ||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 1025 ATAGTTGCTTTGATTGCAAGTCGAGGGCGTGGAAAATCTGCTGCACTTGGTTTAGCTGTT 1084
Query 953 GCTGGGGCTGTTGCTGCTGGGTACTCTAATATTTACGTAACAGCACCGAGCCCAGATAAC 1012
|| ||||||||||||||||||||||| ||||||||| |||| ||||| ||||| ||||||
Sbjct 1085 GCCGGGGCTGTTGCTGCTGGGTACTCAAATATTTACATAACTGCACCAAGCCCGGATAAC 1144
Query 1013 TTGAAAACAGTCTTCGAGTTTGTTTGCAAAGG-TTTCGATGCACTTGAATATAAGGAACA 1071
||||| ||| |||| ||||||||||||||||| ||| |||||||||||||||||||| ||
Sbjct 1145 TTGAAGACATTCTTTGAGTTTGTTTGCAAAGGCTTT-GATGCACTTGAATATAAGGAGCA 1203
Query 1072 TCTTGAATATGATGTCGTGAGAAGTGTGAATCCTGAATTTAATAAAGCCATCGTACGGAT 1131
||||| |||||||| |||| ||||| ||||||||| || || ||||| || ||||||||
Sbjct 1204 CCTTGATTATGATGTTGTGAAAAGTGCGAATCCTGACTTCAAAAAAGCTATTGTACGGAT 1263
Query 1132 CAATATCTTCAAGCAGCACAGGCAAACTATCCAGTATATACAACCGCATGAACATGAAAA 1191
||||||||||||||||| || ||||||||||||||||||||||| || || ||||| ||
Sbjct 1264 AAATATCTTCAAGCAGCATAGACAAACTATCCAGTATATACAACCACACGAGCATGAGAA 1323
Query 1192 GCTCTCACAAGTGGAGCTGTTGGTTATTGATGAAGCGGCAGCTATTCCTTTGCCAGTTGT 1251
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1324 GCTCTCACAAGTAGAGCTGTTGGTTATTGATGAAGCGGCAGCTATTCCTTTGCCAGTTGT 1383
Query 1252 GAAGTCTCTACTTGGCCCTTACCTAGTTTTCTTATCATCTACTGTCAGTGGCTATGAAGG 1311
||||||| | ||||| ||||| ||||||||| |||| || ||||||||||||||||||||
Sbjct 1384 GAAGTCTTTGCTTGGTCCTTATCTAGTTTTCCTATCGTCAACTGTCAGTGGCTATGAAGG 1443
Query 1312 TACTGGTAGATCTTTGTCCCTGAAACTCCTCCAACAGTTAGAAGAGCAAAGCCGAGCCCC 1371
||||| ||||||||||||||||||||||||||||| ||||| ||||||||||| || ||
Sbjct 1444 CACTGGGAGATCTTTGTCCCTGAAACTCCTCCAACAATTAGATGAGCAAAGCCGGGCTCC 1503
Query 1372 TG-TCACTGGTGTTGAAGGCTCTCTTTCTGGTTGCCTTTTCAAGAAAATAGAACTTAGTG 1430
|| | |||||| |||||||||||||||||||||| ||||||||||| |||||||||| ||
Sbjct 1504 TGCT-ACTGGTCTTGAAGGCTCTCTTTCTGGTTGTCTTTTCAAGAAGATAGAACTTAATG 1562
Query 1431 AGTCTATAAGATACGCTTCTGGAGATCCAATTGAATCCTGGCTTAATGGATTACTATGCC 1490
||||||| ||||||| ||||||||||||||| ||||||||||||||||| |||| ||||
Sbjct 1563 AGTCTATTAGATACGGTTCTGGAGATCCAATAGAATCCTGGCTTAATGGCCTACTTTGCC 1622
Query 1491 TTGATGTTGCTAATTGTCTTCCAAATCCTGCTTGCCATCCT-CTGCCAAGTCAGTGTGAT 1549
|||||||||||| |||||| || |||||||| ||||||||| | ||||||||||||||||
Sbjct 1623 TTGATGTTGCTACTTGTCTGCCTAATCCTGCGTGCCATCCTTC-GCCAAGTCAGTGTGAT 1681
Query 1550 CTTTATTATGTCAACCGAGACAC-CTTATTTTCTTATCACAAGGACAGTGAGTTGTTTTT 1608
|| |||||||||||||||||||| ||| |||||||||||||| || ||||| |||||| |
Sbjct 1682 CTCTATTATGTCAACCGAGACACACTT-TTTTCTTATCACAAAGATAGTGAATTGTTTCT 1740
Query 1609 ACAGCGAATGATGGCACTTTGTGTCTCTTCTCACTACAAGAATTCTCCTAATGATCTTCA 1668
|||| |||||||||| || |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1741 ACAGAGAATGATGGCGCTATGTGTCTCGTCTCACTACAAGAATTCTCCTAATGATCTTCA 1800
Query 1669 ACTTTTGTCGGATGCTCCTGCTCATCATTTGTTTGTGTTGCTCGGTCCTGTTGATGAGTC 1728
||| || | ||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1801 ACTGCTGGCTGATGCTCCTGCTCATCATTTGTTTGTGTTACTTGGTCCTGTTGATGAGTC 1860
Query 1729 CAAAAACCAGCTTCCTGACATACTGTGTGTTATTCAGGTCTGTCTCGAAGGACAGATATC 1788
| ||||| |||||||||| ||||| |||||||| ||||||||||| |||||| |||||||
Sbjct 1861 CCAAAACAAGCTTCCTGATATACTCTGTGTTATCCAGGTCTGTCTTGAAGGAAAGATATC 1920
Query 1789 TCG-GAAATCAGCTGAAAAAAGTTTAAGAGAAGGTCATTCACCACATGGAGATCAAATAC 1847
| | ||| ||||| |||||||||| || || ||||||||| ||||||| ||||| |
Sbjct 1921 T-GAGAACTCAGCCCTTCAAAGTTTAAGGGATGGCCATTCACCATATGGAGACCAAATTC 1979
Query 1848 CATGGAAGTTCTGTGAACAGTTCCGGGACGTGGTCTTTCCAAAGCTT-TCTGGTGCTCGT 1906
||||||| ||||||||||| ||||||||| | | |||||| | || |||||||||||
Sbjct 1980 CATGGAAATTCTGTGAACAATTCCGGGACATTGAATTTCCAG-GTTTCTCTGGTGCTCGG 2038
Query 1907 ATAGTACGCATAGCAGTCCACCCCAACGCTATGAAGATGGGATATGGGTCTGCTGCGGTT 1966
||||| ||||||||||||||||| ||||| ||||||||||||||||| |||||||| |||
Sbjct 2039 ATAGTTCGCATAGCAGTCCACCCTAACGCCATGAAGATGGGATATGGTTCTGCTGCAGTT 2098
Query 1967 GAACTCTTGACCAGATACTTTGAGGGTCAGCTAGCTTCAATATCAGAAGGTGATGATGAA 2026
||||||||||||||||| |||||||||||| ||||| |||| ||||||| ||||||| ||
Sbjct 2099 GAACTCTTGACCAGATATTTTGAGGGTCAGATAGCTCCAATCTCAGAAGCTGATGATAAA 2158
Query 2027 CTGGAAGTGGAGCCTTCACC-AGTCAGAGTTACCGAGGCTGCTGCA-AAGGTTTCTTTGC 2084
| || ||||||| | |||| | | | ||| || ||||| |||| | ||||| || |||
Sbjct 2159 GTTGATGTGGAGCATGCACCCATTAA-AGTCACTGAGGCAGCTG-AGAAGGTCTCCATGC 2216
Query 2085 TTGAGGAACA-GATAAAGCCTCGTGCCAATCTTCCACCTTTGCTGGTTCCTCTTCGTGAT 2143
| ||||| || | |||||||||| | |||||||||||| | ||||||| || | ||||
Sbjct 2217 TCGAGGAGCAAG-TAAAGCCTCGCACAAATCTTCCACCTCTATTGGTTCCACTCCATGAT 2275
Query 2144 CGACGACCTGAGA-GACTCCACTACATCGGTGTCTCTTTTGGGCTTACTTTGGACCTCTT 2202
|||||||||||| | ||||||||||| ||||| || |||||||||||||||||||||||
Sbjct 2276 AGACGACCTGAGAAG-CTCCACTACATTGGTGTTTCCTTTGGGCTTACTTTGGACCTCTT 2334
Query 2203 CCG-TTTCTGGAGAAAACATAAATTTGCTCCATTCTACATCAGTCAAATACCAAGTGCTG 2261
||| ||| ||||| |||||||| ||||| ||||||||| | || ||||| ||||||||||
Sbjct 2335 CCGATTT-TGGAGGAAACATAATTTTGCGCCATTCTACGTTAGCCAAATCCCAAGTGCTG 2393
Query 2262 TGACTGGTGAGCACACATGTATGCTTCTGAAACCATTAACCTTAAGCAACGATGAATTCG 2321
|||||||||||||||||||||||||| | ||||| |||| || || |||||| | |
Sbjct 2394 TGACTGGTGAGCACACATGTATGCTTTTAAAACCCTTAA----AA--AATGATGAACTAG 2447
Query 2322 AAGTTGATGAGTCGGATGAACTGGGCTTCTTTGCTCCCTTCTATAAAGATTTCAGGATAA 2381
|||| | ||||| ||||| |||||||||||| ||||||||||||||||||||| |||||
Sbjct 2448 AAGTCAACGAGTCCGATGAGCTGGGCTTCTTTACTCCCTTCTATAAAGATTTCAAGATAA 2507
Query 2382 GGTTCTCTAAACTGTTGAGTGATAAATTCAAGAAGATGGATTATAAACTTGCAATGAGTG 2441
|||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 2508 GGTTCTCTAAGCTGTTGAGTGACAAATTCAAGAAGATGGACTATAAACTTGCAATGAGTG 2567
Query 2442 TTTTGAACCCTAAGATCAACTTCCCAGAGGTTGATT-TGACTGGAAATTCACCAGATGGA 2500
| || ||||| |||||||||||||| |||||||||| | | || | |||| ||| ||||
Sbjct 2568 TCTTAAACCCCAAGATCAACTTCCCCGAGGTTGATTCTT-CAGGGAGTTCATCAGGTGGA 2626
Query 2501 TTTTTGAAGAAACTCGACGG-AGTTCTT-TCACCTTATGATATGGAGAGATTCAGAGCAT 2558
|||||||||| ||||||||| | | || || || |||||||||||||| |||||||||
Sbjct 2627 TTTTTGAAGACACTCGACGGCA-TA-TTATCTCCATATGATATGGAGAGGCTCAGAGCAT 2684
Query 2559 ACACTGCCAATCTCGT-TGACTTCAATCTGGTTTATGACATCTGCAAAACTCTAGCTCAT 2617
| ||| ||||| | ||||||||||||||||||||||||||||||||| || || |||
Sbjct 2685 ATACTAAAAATCT-GACTGACTTCAATCTGGTTTATGACATCTGCAAAACACTGGCACAT 2743
Query 2618 CATTATTTTCAAGAGAAGCTCCCAGTCTCGCTGTCGTATGTTCAAGCTTCTGTACTCCTG 2677
|| |||||| ||||||||||||| || || ||||| |||||||| || ||| || | ||
Sbjct 2744 CAGTATTTTGAAGAGAAGCTCCCCGTATCACTGTCATATGTTCAGGCATCTATATTGCTA 2803
Query 2678 TGTTTGGGCTTGCAGGAGTCAGATTTCTCGAGCATCGAGAGACAAATGCAGTTGGAGAGG 2737
|| ||||| ||||||||| | ||| |||| ||||||||||||||||||||||||||||||
Sbjct 2804 TGCTTGGGGTTGCAGGAGACGGATATCTCTAGCATCGAGAGACAAATGCAGTTGGAGAGG 2863
Query 2738 GGCCAAATATACTCTCTTCTATTGAAGGTTGGAAAGAAGTTATACAAATATTTGAATGGA 2797
|| |||||| | |||||| | ||||||| | || | |||| ||||||||| | ||||||
Sbjct 2864 GGACAAATACATTCTCTTATCCTGAAGGTCGCAAGGGAGTTGTACAAATATCTCAATGGA 2923
Query 2798 ATCGCAACAAAAGAGCTCGAATCCA-CCTTACCTCGGTTGAAAGATAGAGTGCTTGAACC 2856
| ||| ||| ||| ||||||| | || | ||||| |||||||| |||| |||||||||
Sbjct 2924 GTTGCAGGAAAGGAGATCGAATC-AGCCCTCCCTCGTTTGAAAGAGAGAGAGCTTGAACC 2982
Query 2857 TCACAAAGTATCAGTAGACGAAGATCTCAGGGAGGGAGCAAAAGAAGTTGAGGAACAAAT 2916
|||||| | ||| || ||||| ||| ||||||| ||||||||| |||| |||||||||||
Sbjct 2983 TCACAATGAATCGGTCGACGATGATATCAGGGAAGGAGCAAAACAAGTCGAGGAACAAAT 3042
Query 2917 ---GA-GG-GCAAGGATAGAAGAATTGTTGGACCCTGAGCTACTTGACCAATTTGCTA-T 2970
|| || | ||| || | || ||| |||| ||||||| | || ||| || || |
Sbjct 3043 AATGAAGGAG-AAG-ATTGGAGGATTAATGGATTCTGAGCTTCA--AC-AATATG-TAAT 3096
Query 2971 TGGGGACAAAGAAGCTGAGGCTTTGCAAAAGTCGAAGATCTCTTCAAGTGGTCTTATCAG 3030
||||||||||||| | |||||| ||||| | || || ||||||||||||||| |||||||
Sbjct 3097 TGGGGACAAAGAATCAGAGGCTCTGCAACACTCAAAAATCTCTTCAAGTGGTATTATCAG 3156
Query 3031 TAT-AGAGTCCACCAAAACTGATAACAAGAAAGAGAAGCCAAGTGGTTTTGATAAATC-A 3088
| | | ||||||||||| | | ||| ||||| | | ||||| || ||||| |
Sbjct 3157 TGTTA-AGTCCACCAAATCGGG------GAATGAGAA-C---G-GGTTT-GACAAATCCA 3203
Query 3089 GCCAAAAAGAGAGGCAATGATAAGCATTCCTC 3120
||||||||||| ||| |||||||| ||||||
Sbjct 3204 -CCAAAAAGAGAAGCAGTGATAAGCGTTCCTC 3234
> Ahg312088 jgi|Araly1|312088|fgenesh1_pm.C_scaffold_1000868
Length=3168
Score = 2952 bits (1598), Expect = 0.0
Identities = 1791/1879 (95%), Gaps = 34/1879 (2%)
Strand=Plus/Plus
Query 1302 GCTATGAAGGTACTGGTAGATCTTTGTCCCTGAAACTCCTCCAACAGTTAGAAGAGCAAA 1361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1292 GCTATGAAGGTACTGGTAGATCTTTGTCCCTGAAACTCCTCCAACAGTTAGAAGAGCAAA 1351
Query 1362 GCCGAGCCCCTGTCACTGGTGTTGAAGGCTCTCTTTCTGGTTGCCTTTTCAAGAAAATAG 1421
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1352 GCCGAGCCCCTGTCACTGGTGTTGAAGGCTCTCTTTCTGGTTGCCTTTTCAAGAAGATAG 1411
Query 1422 AACTTAGTGAGTCTATAAGATACGCTTCTGGAGATCCAATTGAATCCTGGCTTAATGGAT 1481
|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1412 AACTTAATGAGTCTATTAGATACGCTTCTGGAGATCCAATTGAATCCTGGCTTAATGGAT 1471
Query 1482 TACTATGCCTTGATGTTGCTAATTGTCTTCCAAATCCTGCTTGCCATCCTCTGCCAAGTC 1541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1472 TACTATGCCTTGATGTTGCTAATTGTCTTCCAAATCCTGCTTGCCATCCTCTGCCAAGTC 1531
Query 1542 AGTGTGATCTTTATTATGTCAACCGAGACACCTTATTTTCTTATCACAAGGAC----AG- 1596
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 1532 AGTGTGATCTTTATTATGTCAACCGAGACACCTTATTTTCTTATCACAAAGACAGTGAGT 1591
Query 1597 TG-------A-G---T--T-G-T--TTTT---A-C-AGCGAATGATGGCACTTTGTGTCT 1634
|| | | | | | | |||| | | | ||||||||||||||||||||||
Sbjct 1592 TGTTTTTACAGGTAATAATAGTTGATTTTACAATCTACCGAATGATGGCACTTTGTGTCT 1651
Query 1635 CTTCTCACTACAAGAATTCTCCTAATGATCTTCAACTTTTGTCGGATGCTCCTGCTCATC 1694
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 1652 CTTCTCACTACAAGAATTCTCCTAATGATCTTCAACTTCTGTCGGATGCCCCTGCTCATC 1711
Query 1695 ATTTGTTTGTGTTGCTCGGTCCTGTTGATGAGTCCAAAAACCAGCTTCCTGACATACTGT 1754
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1712 ATTTGTTTGTGTTGCTCGGTCCTGTTGATGAGTCCAAAAACCAGCTTCCTGATATACTGT 1771
Query 1755 GTGTTATTCAGGTCTGTCTCGAAGGACAGATATCTCGGAAATCAGCTGAAAAAAGTTTAA 1814
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1772 GTGTTATCCAGGTCTGTCTCGAAGGACAGATATCTCGGAAATCAGCTGAAAAAAGTTTAA 1831
Query 1815 GAGAAGGTCATTCACCACATGGAGATCAAATACCATGGAAGTTCTGTGAACAGTTCCGGG 1874
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1832 GAGAAGGTCATTCACCACATGGAGATCAAATACCATGGAAGTTCTGTGAACAGTTCCGGG 1891
Query 1875 ACGTGGTCTTTCCAAAGCTTTCTGGTGCTCGTATAGTACGCATAGCAGTCCACCCCAACG 1934
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1892 ACGTTGTCTTTCCAAAGCTTTCTGGTGCTCGTATAGTACGCATAGCAGTCCACCCCAATG 1951
Query 1935 CTATGAAGATGGGATATGGGTCTGCTGCGGTTGAACTCTTGACCAGATACTTTGAGGGTC 1994
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1952 CTATGAAGATGGGATATGGGTCTGCTGCGGTTGAACTTTTGACCAGATACTTTGAGGGTC 2011
Query 1995 AGCTAGCTTCAATATCAGAAGGTGATGATGAACTGGAAGTGGAGCCTTCACCAGTCAGAG 2054
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2012 AGCTAGCTTCTATATCAGAAGGTGATGATGAACTGGATGTGGAGCCTTCACCAGTCAGAG 2071
Query 2055 TTACCGAGGCTGCTGCAAAGGTTTCTTTGCTTGAGGAACAGATAAAGCCTCGTGCCAATC 2114
|||| |||||||| | ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2072 TTACTGAGGCTGCCGAAAAGGTTTCCTTGCTTGAGGAACAGATAAAGCCTCGTGCCAATC 2131
Query 2115 TTCCACCTTTGCTGGTTCCTCTTCGTGATCGACGACCTGAGAGACTCCACTACATCGGTG 2174
||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 2132 TTCCACCTTTGCTGGTTCCTCTTCGTGATCGGCGACCTGAGAGACTCCACTACCTCGGTG 2191
Query 2175 TCTCTTTTGGGCTTACTTTGGACCTCTTCCGTTTCTGGAGAAAACATAAATTTGCTCCAT 2234
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2192 TCTCTTTTGGGCTTACTTTAGACCTCTTCCGTTTCTGGAGAAAACATAAATTTGCTCCAT 2251
Query 2235 TCTACATCAGTCAAATACCAAGTGCTGTGACTGGTGAGCACACATGTATGCTTCTGAAAC 2294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2252 TCTACATCAGTCAAATACCAAGTGCTGTGACTGGTGAGCACACATGTATGCTTCTGAAAC 2311
Query 2295 CATTAACCTTAAGCAACGATGAATTCGAAGTTGATGAGTCGGATGAACTGGGCTTCTTTG 2354
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2312 CATTAACATTAAGCAACGATGAATTCGAAGTTGATGAGTCAGATGAACTGGGCTTCTTTG 2371
Query 2355 CTCCCTTCTATAAAGATTTCAGGATAAGGTTCTCTAAACTGTTGAGTGATAAATTCAAGA 2414
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2372 CTCCCTTCTATAAAGATTTCAGGATAAGGTTCTCTAAGCTGTTGAGTGATAAATTCAAGA 2431
Query 2415 AGATGGATTATAAACTTGCAATGAGTGTTTTGAACCCTAAGATCAACTTCCCAGAGGTTG 2474
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 2432 AGATGGATTATAAACTTGCAATGAGTGTCTTGAACCCTAAGATTAACTTCCCAGAGGTTG 2491
Query 2475 ATT-TGACTGGAAATTCACCAGATGGATTTTTGAAGAAACTCGACGGAGTTCTTTCACCT 2533
||| | | || |||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 2492 ATTCTT-CGGGGAATTCACCTGATGGATTTTTGAAGAAACTCGACGGAGTCCTTTCACCT 2550
Query 2534 TATGATATGGAGAGATTCAGAGCATACACTGCCAATCTCGTTGACTTCAATCTGGTTTAT 2593
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2551 TATGATATGGAGAGACTCAGAGCATACACTGCCAATCTCGTTGACTTCAACCTGGTTTAT 2610
Query 2594 GACATCTGCAAAACTCTAGCTCATCATTATTTTCAAGAGAAGCTCCCAGTCTCGCTGTCG 2653
|| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 2611 GATATCTGCAAAACTCTAGCTCATCATTATTTTCAAGAGAAGCTCCCGGTCTCGCTTTCA 2670
Query 2654 TATGTTCAAGCTTCTGTACTCCTGTGTTTGGGCTTGCAGGAGTCAGATTTCTCGAGCATC 2713
||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2671 TATGTTCAAGCATCTGTACTCCTGTGTTTGGGCTTGCAGGAGTCGGATTTCTCGAGCATT 2730
Query 2714 GAGAGACAAATGCAGTTGGAGAGGGGCCAAATATACTCTCTTCTATTGAAGGTTGGAAAG 2773
|||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 2731 GAGAGACAAATGCAGTTGGAGAGGGGGCAAATACACTCTCTTCTATTGAAGGTTGGAAAG 2790
Query 2774 AAGTTATACAAATATTTGAATGGAATCGCAACAAAAGAGCTCGAATCCACCTTACCTCGG 2833
|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 2791 AAGTTATACAAATATTTGAATGCAATCGCAACAAAAGAGCTTGAATCCACCTTACCTCGG 2850
Query 2834 TTGAAAGATAGAGTGCTTGAACCTCACAAAGTATCAGTAGACGAAGATCTCAGGGAGGGA 2893
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2851 TTGAAAGATAGAGTGCTTGAACCTCACAAAGTATCAGTAGACGAAGATCTCAGGGAAGGA 2910
Query 2894 GCAAAAGAAGTTGAGGAACAAATGAGGGCAAGGATAGAAGAATTGTTGGACCCTGAGCTA 2953
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2911 GCAAAAGAAGTTGAGGAACAAATGAGGGCAAGGATAGAAGAATTGTTGGACCCTGAGCTG 2970
Query 2954 CTTGACCAATTTGCTATTGGGGACAAAGAAGCTGAGGCTTTGCAAAAGTCGAAGATCTCT 3013
||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2971 CTTGAACAATTTGCAATTGGGGACAAAGAAGCTGAGGCTTTGCAAAAGTCTAAGATCTCT 3030
Query 3014 TCAAGTGGTCTTATCAGTATAGAGTCCACCAAAACTGATAACAAGAAAGAGAAGCCAA-- 3071
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 3031 TCAAGTGGTCTTATCAGTATTGAGTCCACGAAAACTGATAACAAGAAAGAGAAGCCAACA 3090
Query 3072 -GTGGTTTTGATAAATC-AGCCAAAAAGAGAGGCAATGATAAGCATTCCTCCACATCCAA 3129
|||||||||||||||| | |||||||||||||| |||||||||||||||||| ||||||
Sbjct 3091 AGTGGTTTTGATAAATCCA-CCAAAAAGAGAGGCGATGATAAGCATTCCTCCAGATCCAA 3149
Query 3130 CAAAAAGAGAAGAGCCTGA 3148
||| |||||||||||||||
Sbjct 3150 CAAGAAGAGAAGAGCCTGA 3168
Score = 2074 bits (1123), Expect = 0.0
Identities = 1205/1246 (97%), Gaps = 0/1246 (0%)
Strand=Plus/Plus
Query 62 ATGAGGAAGAAGGTAGACGAACGTATAAGGACTCTGATTGAAAACGGTGTTAAACTTAGA 121
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1 ATGAGGAAGAAGGTAGACGAACGTATCAGGACTCTGATTGAAAACGGTGTTAAACTCAGA 60
Query 122 CACCGTTCCATGTTTGTCATTATTGGTGATAAGGCTCGTGACCAGATAGTTAATCTTCAT 181
|||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||
Sbjct 61 CACCGTTCCATGTTTGTCATCATTGGTGACAAAGCTCGTGACCAGATAGTTAATCTTCAT 120
Query 182 CACATTTTGTCAAAATCGGTGGTCAAGTCTAACCCAAGTGTGCTATGGTGCTACAAGAAT 241
|||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 121 CACATTTTGTCAAAATCGCCGGTCAAGTCTAACACAAGTGTGCTATGGTGCTACAAGAAT 180
Query 242 AGACTCGACATTAGCAGTCACAATAAAAAACGTGCTAAGCAGTTGAAGAAGATGAAGGAG 301
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 181 AGACTCGACATTAGCAGTCACAATAAAAAACGTGCGAAGCAGTTGAAGAAGATGAAGGAG 240
Query 302 AGAGGACAATTAGATCCTGAAAAACTCGACGCTTTCTCTCTTTTTCTTGATGTGGTGGAT 361
|||||||||||||| ||||||||||| || ||||||||||||||||||||||||| ||||
Sbjct 241 AGAGGACAATTAGACCCTGAAAAACTAGATGCTTTCTCTCTTTTTCTTGATGTGGGGGAT 300
Query 362 GTTACTCATTGCTTGTACAAAGATTCTGAAAGAATTCTTGGGAATACTTTTGGCATCTGC 421
|| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 301 GTCACGCATTGCTTGTACAAAGATTCTGAAAGAATTCTTGGGAATACTTTTGGCATGTGC 360
Query 422 ATCTTACAGGATTTTGAAGCTCTAACTCCAAATCTACTAGCAAGAACAATAGAGACAGTC 481
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ATCTTACAGGATTTTGAAGCTCTAACTCCAAATCTACTAGCAAGAACAATAGAGACAGTT 420
Query 482 GAAGGGGGTGGGCTAGTTGTATTATTATTACAATCGCTTGCTTCACTTACTAGTCTCTGC 541
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 421 GAAGGGGGTGGGCTAGTTGTATTATTATTACAATCACTTGCTTCACTTACTAGTCTCTGC 480
Query 542 ACCATGGTTATGGATGTGCATGATAGATTTCGAACCGAGTCACACTCTGAAGCTTCCGGA 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ACCATGGTTATGGATGTGCATGATAGATTTCGAACCGAGTCACACTCTGAAGCTTCCGGA 540
Query 602 CGTTTCAATGAACGATTTCTGTTGTCACTAGCATCTTGCAAAGCATGCGTTGTCATGGAT 661
||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||
Sbjct 541 CGTTTCAATGAACGATTTCTGTTATCACTAGCGTCTTGCAAAGCATGTGTTGTCATGGAT 600
Query 662 GATGAGTTGAATTTATTGCCACTTTCATCTCATATCAAATCTATCACAAAAGTTCCAACA 721
|||||| ||||| ||||||| ||||| |||||||||| ||||||||||||||||||||||
Sbjct 601 GATGAGCTGAATATATTGCCGCTTTCGTCTCATATCAGATCTATCACAAAAGTTCCAACA 660
Query 722 AAGGAGGATTCGGAAGCGCTTTCTGAGGCAGAACGAGACCTGAAGAGTTTGAAAGATGCA 781
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 AAGGAGGATTCAGAAGGGCTTTCTGAGGCAGAACGAGACCTGAAGAGTTTGAAAGATGCA 720
Query 782 CTAAACGATGATTTTCCTGTTGGTCCTTTAATTAATAAGTGTTGTACATTGGATCAGGGT 841
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 721 CTAAACGATGATTTTCCTGTTGGTCCTTTGATTAATAAGTGTTGTACATTGGATCAGGGT 780
Query 842 AAAGCTGTTGTCACATTTTTCGATGCAATATTGGATAAGACCCTCCGTAGCATAGTTGCT 901
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 781 AAAGCTGTTGTCACATTTTTCGATGCAATATTGGATAAGACCCTCCGCAGCATAGTTGCT 840
Query 902 CTGATTGCTAGTCGTGGGCGTGGAAAATCTGCTGCACTTGGTCTAGCTGTTGCTGGGGCT 961
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 841 CTGATTGCTAGTCGTGGGCGTGGAAAATCTGCTGCACTTGGTCTAGCTGTTACTGGGGCT 900
Query 962 GTTGCTGCTGGGTACTCTAATATTTACGTAACAGCACCGAGCCCAGATAACTTGAAAACA 1021
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 901 GTTGCTGCTGGGTACTCTAATATTTACGTAACAGCACCAAGCCCAGATAACTTGAAAACA 960
Query 1022 GTCTTCGAGTTTGTTTGCAAAGGTTTCGATGCACTTGAATATAAGGAACATCTTGAATAT 1081
|||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 961 TTCTTTGAGTTTGTTTGCAAAGGTTTTGAAGCACTTGAATATAAGGAACATCTTGAATAT 1020
Query 1082 GATGTCGTGAGAAGTGTGAATCCTGAATTTAATAAAGCCATCGTACGGATCAATATCTTC 1141
|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||
Sbjct 1021 GATGTCGTGAGAAGTGTGAATCCTGACTTTAATAAAGCCATCGTACGGATAAATATATTC 1080
Query 1142 AAGCAGCACAGGCAAACTATCCAGTATATACAACCGCATGAACATGAAAAGCTCTCACAA 1201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 AAGCAGCACAGGCAAACTATCCAGTATATACAACCGCATGAACATGAAAAGCTCTCACAA 1140
Query 1202 GTGGAGCTGTTGGTTATTGATGAAGCGGCAGCTATTCCTTTGCCAGTTGTGAAGTCTCTA 1261
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 GTTGAGCTGTTGGTTATTGATGAAGCGGCAGCTATTCCTTTGCCAGTTGTGAAGTCTCTA 1200
Query 1262 CTTGGCCCTTACCTAGTTTTCTTATCATCTACTGTCAGTGGCTATG 1307
||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1201 CTTGGCCCTTACCTAGTTTTCTTATCATCTACTGTCAGTGGGTATG 1246
> Ahg471163 jgi|Araly1|471163|fgenesh2_kg.1__1117__AT1G10500.1
Length=832
Score = 440 bits (238), Expect = 3e-122
Identities = 281/302 (93%), Gaps = 2/302 (1%)
Strand=Plus/Minus
Query 3228 GTAACCAGGTTGAATAATTTATTAAAATTATGGTTTGATCAT-ACAA-tttttttaaaaa 3285
||||||||||||||||||||||||||||| ||||||| |||| |||| | |||||
Sbjct 832 GTAACCAGGTTGAATAATTTATTAAAATTTTGGTTTGTTCATCACAAGTGAAAAAAAAAA 773
Query 3286 aaCTTACAGATTCTGTTTGAGCATTCTACAACCATAATACAAAGTTTTCTATTAACTATA 3345
||||| || |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 772 AACTTGCATATTCTGTTTGGGCATTCTACAACCATAATACAAAGTTTTCTATTAACTATA 713
Query 3346 ACTATATTGTTTATCTACTGCAATGTGTGAAACTGGTTCACATCTCGGCAGCAAAAGACT 3405
|||||||| ||||| ||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 712 ACTATATTATTTATTTACTGCAATATGTCAAACTGGTTCACATCTCGGCAGCAAAAGACT 653
Query 3406 TCCCACATCCACAGGTTTGTGTAGCGTTAGGGTTCGAGAAAGAGAAGCCTCCACCAATCA 3465
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 652 TCCCACATCCACAGGTTTGTGTAGCGTTAGGGTTGGAGAAAGAGAAGCCTCCACCAATTA 593
Query 3466 AAGCATCGCTGTAATCAAGCTGCATTCCAAAAAGAAAGAGCATGCTCTTTGGATCACAAA 3525
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 592 AAGCATCACTGTAATCAAGCTGCATTCCGAAAAGAAAGAGCATGCTCTTTGGATCACAAA 533
Query 3526 CT 3527
||
Sbjct 532 CT 531
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 145227698568
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5