BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G10500.1
Length=848
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471163 jgi|Araly1|471163|fgenesh2_kg.1__1117__AT1G10500.1 1125 0.0
> Ahg471163 jgi|Araly1|471163|fgenesh2_kg.1__1117__AT1G10500.1
Length=832
Score = 1125 bits (609), Expect = 0.0
Identities = 776/852 (91%), Gaps = 29/852 (3%)
Strand=Plus/Plus
Query 1 ACCTACCTGAAAACAAATAACATGTGGACTTAAAAAATTGTTATGCAAAAAGATTTGttt 60
||||||||||||||||| ||||||||||||| |||||||||| ||| |||||||||| ||
Sbjct 1 ACCTACCTGAAAACAAAAAACATGTGGACTT-AAAAATTGTTGTGCGAAAAGATTTG-TT 58
Query 61 ttttCATTGGTCTTCTTCTACTACACGCATTTGAATCAGCAGAGAGATTAATTCCTCAGC 120
| ||| ||||||||||||||||||||||| || | ||||| ||||||||||
Sbjct 59 TCTTC-TTGGTCTTCTTCTACTACACGCA-TT---T-----GAGAG----ATTCCTCAGC 104
Query 121 TCGGCGATTCAATTCTCAGAAGATTATGGCTTTCGCTACTGGAATCACGACGTCTTCAAA 180
| |||||||||||||||||||||| |||||||||| |||||||||||||| |||||||
Sbjct 105 TTGGCGATTCAATTCTCAGAAGATGATGGCTTTCG---CTGGAATCACGACGACTTCAAA 161
Query 181 TCCAACTTTTCTTGGTCTAAAGATCTCCAACACAAGTCTACGTTCTGTGGTTTCATGTAA 240
||||||||||||||| |||| |||||| ||||||||| ||| |||||||||| |||||||
Sbjct 162 TCCAACTTTTCTTGGGCTAAGGATCTCTAACACAAGTTTACCTTCTGTGGTTCCATGTAA 221
Query 241 TTCGATTTCGTTTCCTTCTTTGTCATATGTGAATCTCAA---C---CTCAATCGGAGAAA 294
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 222 TTCGATTTCGTTTCCTTCTTTGTCATATGTGAATCTCAATCTCAATCTCAATCGGAGAAA 281
Query 295 CCGCCTTTCTGTTCGATCCGCTTCGGTTCCAGCTGCACCTGCAATGGAGGGACTGAAGCC 354
|| ||| | |||||||||| |||| ||||||||||||||||||||||| |||||||||||
Sbjct 282 CCTCCTCTGTGTTCGATCCACTTCAGTTCCAGCTGCACCTGCAATGGAAGGACTGAAGCC 341
Query 355 GGCGATATCTCTGTCAGAAAATGCACTTAAGCATCTGAGTAAGATGAGATCAGAACGTGG 414
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 342 GGCGATTTCTCTGTCAGAGAATGCACTTAAGCATCTGAGTAAGATGAGATCAGAACGTGG 401
Query 415 GGAAGATTTGTGCTTGAGAATTGGAGTCAAACAAGGAGGATGCTC-GGGTATGTCCTACA 473
|||||||||||||||| ||||||| |||||||||||||||||||| ||| ||||| ||||
Sbjct 402 GGAAGATTTGTGCTTGCGAATTGGTGTCAAACAAGGAGGATGCTCTGGG-ATGTCTTACA 460
Query 474 CGATGGACTTTGAAAACAGAGCAAATGCAAGACCAGATGATTCCACTATCGAATACCAGG 533
| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 461 CTATGGACTTTGAGAACAGAGCAAATGCAAGACCAGATGATTCCACCATCGAATACCAAG 520
Query 534 GATTCACTATAGTTTGTGATCCAAAGAGCATGCTCTTTCTTTTTGGAATGCAGCTTGATT 593
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 521 GATTCACTATAGTTTGTGATCCAAAGAGCATGCTCTTTCTTTTCGGAATGCAGCTTGATT 580
Query 594 ACAGCGATGCTTTGATTGGTGGAGGCTTCTCTTTCTCGAACCCTAACGCTACACAAACCT 653
|||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 581 ACAGTGATGCTTTAATTGGTGGAGGCTTCTCTTTCTCCAACCCTAACGCTACACAAACCT 640
Query 654 GTGGATGTGGGAAGTCTTTTGCTGCCGAGATGTGAACCAGTTTCACACATTGCAGTAGAT 713
||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||
Sbjct 641 GTGGATGTGGGAAGTCTTTTGCTGCCGAGATGTGAACCAGTTTGACATATTGCAGTAAAT 700
Query 714 AAACAATATAGTTATAGTTAATAGAAAACTTTGTATTATGGTTGTAGAATGCTCAAACAG 773
||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 701 AAATAATATAGTTATAGTTAATAGAAAACTTTGTATTATGGTTGTAGAATGCCCAAACAG 760
Query 774 AATCTGTAAGtttttttaaaaaaa-TTGT-ATGATCAAACCATAATTTTAATAAATTATT 831
||| || |||||||||| | |||| |||| ||||||| |||||||||||||||||
Sbjct 761 AATATGCAAGTTTTTTTTTTTTCACTTGTGATGAACAAACCAAAATTTTAATAAATTATT 820
Query 832 CAACCTGGTTAC 843
||||||||||||
Sbjct 821 CAACCTGGTTAC 832
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31375160691
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5