BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G10510.1
Length=2150
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471164 jgi|Araly1|471164|fgenesh2_kg.1__1118__AT1G10510.1 3319 0.0
Ahg920123 jgi|Araly1|920123|scaffold_101404.1 449 3e-125
> Ahg471164 jgi|Araly1|471164|fgenesh2_kg.1__1118__AT1G10510.1
Length=2140
Score = 3319 bits (1797), Expect = 0.0
Identities = 2037/2151 (95%), Gaps = 24/2151 (1%)
Strand=Plus/Plus
Query 1 CTTCATCTTCATCATCGTCTCTTCTCTTCTACTCCAATTCGTCTCTTTTAGTCTCTTACA 60
||||||||||||||||| |||||||||||| |||||||||||| | |||||| |||| ||
Sbjct 1 CTTCATCTTCATCATCGCCTCTTCTCTTCTCCTCCAATTCGTCGC-TTTAGTATCTTCCA 59
Query 61 CTTTCCTAATTCTTCAGTGGTTGGTTTTCACACAGCGAGAGTTTCAAGCGTCTATGCGTA 120
||||| | ||||| ||||||||||||| || ||||||||| ||||| |||||||||| ||
Sbjct 60 CTTTCTTCATTCTCCAGTGGTTGGTTTACATACAGCGAGAATTTCACGCGTCTATGCATA 119
Query 121 ATTAAGCAGCTCCTTAATGGCTTCTTCTTCCACCAGCTCCCTCAATCTCCACTCTCTCCC 180
|| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 120 ATCAAGCAGCTCTTTAATGGCGTCTTCTTCCACCAGCTCCCTCAATCTCCACTCTCTCCC 179
Query 181 CAAGGCTTCTTCTGGGTTGGGCCAATGGAAGAGTGGGTTCCGGTACGAATTGTTGGGTAG 240
||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 180 CAAGGCTTCTTCTGGGTTGAGCCAATGGAGGAGTGGGTTCCGGTACGAATTGTTGGGTAG 239
Query 241 CTCCGTTTCTAGGAACCGATTGTTTGTTTCTCCTGTGGTGATTCATCACCGAAGTCCGAG 300
|||||||||||| ||||||||||| |||||||| |||||||||| |||||||||||||||
Sbjct 240 CTCCGTTTCTAGAAACCGATTGTTGGTTTCTCCGGTGGTGATTCTTCACCGAAGTCCGAG 299
Query 301 ACTTCCGGCGATCAAAGCGGCGTATAACTCAGATGGAGGCTCGAAGCGTAGTAGGGTTTA 360
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 300 ACTTCCGGCGATCAAAGCTGCGTATAACTCAGATGGAGGCTCGAAGCGTAGTAGGGTTTA 359
Query 361 TAAGGAGTCACAAGCGGCTAGTGGTTTTCCTAATGCTAAAGTGCAGCAGATTGCGTCTTC 420
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TAAGGAGTCACAGGCGGCTAGTGGTTTTCCTAATGCTAAAGTGCAGCAGATTGCGTCTTC 419
Query 421 CGTCTTGCCCTTGGGATCATTTGCTGTCGTCACTTTCGTTTTGTGGAAAGTGGTTGGGAA 480
|||||||| || || |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 420 AGTCTTGCCTTTAGGCTCATTTGCTGTCGTCACTTTCGTTTTGTGGAAAGTGGTTGAGAA 479
Query 481 GTTCATGTCGCCTAAGTCTCCAAAGACT-TCTGCTGGAGAAAACAACTCTTCTACACAGG 539
|||||||||||| ||||||||||||||| | ||||||||||||||| |||||||||||||
Sbjct 480 GTTCATGTCGCCAAAGTCTCCAAAGACTGT-TGCTGGAGAAAACAAATCTTCTACACAGG 538
Query 540 GAGTGAAATGGTCGATCGGGGCCGGTACTAATTTGTTACAAGGATTTGCTGCTAAGGTTG 599
|||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 539 GAGTGAAATGGTCGATTGGGGCCGGTACAAATTTGTTACAGGGATTTGCTGCTAAGGTTG 598
Query 600 ATAGAGAGGCCAAGCAGAGGCTTAATGAATTTGCAAAAGAACTTAGGTCCTTCAGAAGTG 659
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 599 ATAGAGAGGCCAAGCAGAGGCTTAATGAATTTGCAAAAGAACTCAGGTCCTTCAGAAGTG 658
Query 660 TTGACATGTCAGGATGCAACTTTGGAGATGAAGGATTATTCTTTCTTGCTGAAAGCCTTG 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TTGACATGTCAGGATGCAACTTTGGAGATGAAGGATTATTCTTTCTTGCTGAAAGCCTTG 718
Query 720 GGTATAATCAGACTGTAGAGGAAGTCAGTTTTTCTGCAAATGGAATTACAGCTGCAGGAG 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 GGTATAATCAGACTGTAGAGGAAGTCAGTTTTTCTGCAAATGGAATTACAGCTGCAGGAG 778
Query 780 TTAAAGCCTTTGATGGTGTTCTTCAATCAAATATTATGTTAAAAATTCTTAATCTTTCTG 839
|||||||||| || |||||||||||||||||||||||||| ||| |||||||||| ||||
Sbjct 779 TTAAAGCCTTCGACGGTGTTCTTCAATCAAATATTATGTTGAAATTTCTTAATCTCTCTG 838
Query 840 GAAACCCTATCGGTGATGAAGGAGCTAAGACTTTATGCGCTACACTGATGGAAAATTCTA 899
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 839 GAAACCCTATCGGTGATGAAGGCGCTAAGACTTTATGCGCTACACTGATGGAAAATTCTA 898
Query 900 GCATTGAGATACTTCAGCTGAACAGTACTGATATAGGAGATGAGGGTGCAAAGGAAATCG 959
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 899 GCATCGAGATACTTCAGCTGAACAGTACTGATATAGGAGATGAGGGTGCAAAGGAAATTG 958
Query 960 CAGAATTGTTGAAGAGAAATTCGACCTTGAGGATTATTGAGCTGAATAATAACATGATTG 1019
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 959 CAGAGTTGTTGAAGAGAAATTCAACCTTGAGGATTATTGAGCTGAATAATAACATGATTG 1018
Query 1020 ACTATTCTGGATTCACAAGTCTTGCTGGAGCTCTTCTTGAGAATAATACAATACGCAATT 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 ACTATTCTGGATTCACAAGTCTTGCTGGAGCTCTTCTTGAGAATAATACAATACGCAATT 1078
Query 1080 TACATCTCAATGGAAATTACGGTGGTGCTTTGGGTGCCAATGCTTTAGCTAAAGGGCTTG 1139
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1079 TACATCTCAATGGAAATTACGGTGGTGCTTTGGGTGCCAATGCTTTAGCCAAAGGTCTTG 1138
Query 1140 AGGGTAACAAGTCTTTACGGGAACTTCATTTGCATGGAAACTCTATTGGAGACGAAGGGA 1199
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1139 AGGGTAACAAGTCTTTACGGGAACTTCATTTGCATGGAAACTCTATTGGAGACGAAGGAA 1198
Query 1200 CTCGTGCTTTGATGGCTGGTCTATCTTCCCACAAAGGGAAAGTGGCTTTGCTAGATCTCG 1259
| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1199 CGCGTGCTTTGATGGCTGGTCTATCTTCCCACAAAGGGAAACTGGCTTTGCTAGATCTCG 1258
Query 1260 GCAACAACTCCATTTCCGCAAAGGGTGCCTTCTATGTAGCTGAATACATCAAGAGAAGCA 1319
| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1259 GAAACAACTCCATCTCCGCAAAGGGTGCCTTCTATGTAGCAGAATACATCAAGAGAAGCA 1318
Query 1320 AGAGCTTGGTTTGGCTGAACCTGTACATGAATGATATAGGTGATGAGGGAGCTGAAAAGA 1379
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 1319 AGAGCTTGGTTTGGCTGAACCTGTACATGAATGATATAGGCGATGTGGGAGCTGAAAAGA 1378
Query 1380 TTGCAGATTCTCTGAAGCAAAACCGTTCAATTGCAACCATTGACCTGGGTGGAAATAACA 1439
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1379 TTGCAGATGCTCTGAAGCAAAACCGTTCGATTGCAACCATTGACCTGGGTGGAAATAACA 1438
Query 1440 TCCACGCGGAGGGAGTTAATGCTATAGCTCAAGCTCTGAAAGATAATGCAATTATTACGA 1499
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 TCCACGCGGAGGGAGTAAATGCTATAGCTCAAGCTCTGAAAGATAATGCAATTATTACGA 1498
Query 1500 CGTTAGAGGTTGGTTATAATCCCATAGGACCAGACGGAGCTAAAGCATTATCTGAAATTC 1559
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1499 CGTTAGAGGTTGGTTATAATCCCATAGGACCAGACGGAGCTAAAGCATTATCTGAGGTTC 1558
Query 1560 TCAAGTTCCATGGAAATGTAAAGACGCTCAAACTTGGTTGGTGTCAGATAGCTGCCAAGG 1619
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1559 TCAAGTTCCATGGAAATGTAAAGACGCTCAAACTTGGTTGGTGCCAGATAGCTGCTAAGG 1618
Query 1620 GTGCTGAACATGTTGCAGACATGTTGAGATATAACAATACAATCTCGGTTTTGGACTTGC 1679
||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 1619 GTGCTGAACATGTTGCAGACATGCTGAGATATAACAACACAATCTCGGTTTTGGACTTGC 1678
Query 1680 GGGCAAATGGACTTAGAGATGAGGGAGCTTCCTGCTTAGCTCGAAGCTTGAAAGTAGTTA 1739
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1679 GGGCAAATGGACTTAGAGATGAGGGAGCTTCCTGCTTAGCTCGGAGCTTGAAAGTAGTAA 1738
Query 1740 ATGAAGCTCTGACATCTGTGGATCTAGGATTCAATGAAATACGGGATGATGGAGCATTCG 1799
||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1739 ATGAAGCGCTGACATCTGTGGATCTAGGATTCAATGAAATACGGGATGATGGGGCTTTCG 1798
Query 1800 CCATTGCTCAAGCAT-TGAAGGCCAATGAAGATGTCACAGTTACATCGATAAACCTTGGG 1858
| ||||||||||| | | ||||| |||||||||||||| |||||||||||||||||||||
Sbjct 1799 CTATTGCTCAAGC-TCTAAAGGCGAATGAAGATGTCACGGTTACATCGATAAACCTTGGG 1857
Query 1859 AACAACTTCATCACCAAGTTTGGACAGAGTGCGCTCACGGATGCTAGAGATCATGTTCTT 1918
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1858 AACAACTTCATCACCAAGTTTGGACAGAGTGCGCTCACGGATGCTAGAGACCATGTTCTT 1917
Query 1919 GAGATGACTGAAAAGGAAGTAGAAATTTTCTTCTAGGAGAGACATTGAAGTGAAGAAGAC 1978
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1918 GAGATGACTGAAAAAGAAGTAGAGATTTTCTTCTAGGAGAGACATTGAAGTGAAGAAGAC 1977
Query 1979 TTTGTCACTCTGTAATTTTGCACCATT-AGTTGTTGTTTCATTATTTATGACGTTGAAAT 2037
|| ||||||||||||||||||||| || ||||||||| ||||| |||||||||| |
Sbjct 1978 TTCGTCACTCTGTAATTTTGCACCGTTTAGTTGTTGTCTCATTCTTTATGACGT--A--- 2032
Query 2038 GATTCAAGCGAGAGATAAAACA-TT-TGT-TGTTCC--TT-ACGGTGA-GATTTAATTTT 2090
| ||||| ||||||| |||| || | | | || || ||||| | |||| ||||||
Sbjct 2033 G-TTCAAACGAGAGA-AAAATTGTTCTTTCTTTTTGGGTTTACGGT-ACGATTCAATTTT 2089
Query 2091 -AATTCAAGGAA--GTTTTCATGAAAAATGGTGTTGACTAACAAAAGAGAG 2138
||||||| ||| ||||||||||||||||||||||||||||||| |||||
Sbjct 2090 TAATTCAATGAAAAGTTTTCATGAAAAATGGTGTTGACTAACAAATGAGAG 2140
> Ahg920123 jgi|Araly1|920123|scaffold_101404.1
Length=632
Score = 449 bits (243), Expect = 3e-125
Identities = 266/277 (96%), Gaps = 1/277 (0%)
Strand=Plus/Plus
Query 1561 CAA-GTTCCATGGAAATGTAAAGACGCTCAAACTTGGTTGGTGTCAGATAGCTGCCAAGG 1619
||| |||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||
Sbjct 302 CAACGTTCCATGGAAATGTAAAGATGCTCAAACTTGGTTGGTGCCAGATAGCTGCTAAGG 361
Query 1620 GTGCTGAACATGTTGCAGACATGTTGAGATATAACAATACAATCTCGGTTTTGGACTTGC 1679
||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 362 GTGCTGAACATATTGCAGACATGTTGAGATATAACAACACAATCTCGGTTTTGGACTTGC 421
Query 1680 GGGCAAATGGACTTAGAGATGAGGGAGCTTCCTGCTTAGCTCGAAGCTTGAAAGTAGTTA 1739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 GGGCAAATGGACTTAGAGATGAGGGAGCTTCCTGCTTAGCTCGAAGCTTGAAAGTAGTTA 481
Query 1740 ATGAAGCTCTGACATCTGTGGATCTAGGATTCAATGAAATACGGGATGATGGAGCATTCG 1799
||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 482 ATGAAGCGCTGACATCTGTGGATCTAGGATTCAATGAAATACGGGATGATGGGGCTTTCG 541
Query 1800 CCATTGCTCAAGCATTGAAGGCCAATGAAGATGTCAC 1836
| |||||||||||||| ||||||||||||||||||||
Sbjct 542 CTATTGCTCAAGCATTAAAGGCCAATGAAGATGTCAC 578
Score = 220 bits (119), Expect = 3e-56
Identities = 131/137 (96%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 1367 GGAGCTGAAAAGATTGCAGATTCTCTGAAGCAAAACCGTTCAATTGCAACCATTGACCTG 1426
||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 172 GGAGCGGAAAAGATTGCAGATGCTCTGAAGCAAAACCGTTCGATTGCAACCATTGACCTG 231
Query 1427 GGTGGAAATAACATCCACGCGGAGGGAGTTAATGCTATAGCTCAAGCTCTGAAAGATAAT 1486
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 232 GGTGGAAATAACATCCATGCGGAGGGAGTCAATGCTATAGCTCAAGCTCTGAAAGATAAT 291
Query 1487 GCAATTATTACGACGTT 1503
||||||||||| |||||
Sbjct 292 GCAATTATTACAACGTT 308
Score = 139 bits (75), Expect = 8e-32
Identities = 77/78 (99%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 1159 GGAACTTCATTTGCATGGAAACTCTATTGGAGACGAAGGGACTCGTGCTTTGATGGCTGG 1218
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 69 GGAACTTCATTTGCATGGAAACTCTATTGGAGACGAAGGAACTCGTGCTTTGATGGCTGG 128
Query 1219 TCTATCTTCCCACAAAGG 1236
||||||||||||||||||
Sbjct 129 TCTATCTTCCCACAAAGG 146
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80903680380
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5