BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G10520.1
Length=1590
Score E
Sequences producing significant alignments: (Bits) Value
Ahg312091 jgi|Araly1|312091|fgenesh1_pm.C_scaffold_1000871 2577 0.0
Ahg911050 jgi|Araly1|911050|Al_scaffold_0001_1304 1587 0.0
> Ahg312091 jgi|Araly1|312091|fgenesh1_pm.C_scaffold_1000871
Length=1590
Score = 2577 bits (1395), Expect = 0.0
Identities = 1529/1594 (96%), Gaps = 8/1594 (1%)
Strand=Plus/Plus
Query 1 ATGGCGGCAAAGCGAGGGAGAAACCGGTCGCCGTCTCCGGACCCGGAAGGGATGTTCGCC 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGGCAAAGCGAGGGAGAAACCGGTCACCGTCTCCGGACCCGGAAGGGATGTTCGCC 60
Query 61 GGAATGGTAGTTT-TCATGGTTGAAATCGGAGTCCAGCGTCGTCGATTGCAGATCTGGAA 119
||||||||||||| | ||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 61 GGAATGGTAGTTTAT-ATGGTCGAAATCGGAGTCCAGCGTCGTCGATTGCAGATATGGAA 119
Query 120 GCAGAAGCTGGTTCAAATGGGTGCAGTGATCGAAGAAGATCGGGTAACGAAGAAAGTCAC 179
|||||| ||||||||||||||||||| ||||||| |||||||| ||||||||||||||||
Sbjct 120 GCAGAAACTGGTTCAAATGGGTGCAGAGATCGAAAAAGATCGGTTAACGAAGAAAGTCAC 179
Query 180 TCATGTTCTTGCCATGAATCTCGAAGCTCTTCTCCACAAATTTGGGAAAGAACGTCTCTC 239
||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||
Sbjct 180 TCATGTTCTTGCCATGAATCTGGATGCTCTTCTCGACAAATTTGGGAAAGAACGTCTCTC 239
Query 240 GCATTTTACAGCACGCCTTATGCTTTACCAGTGGTTAGAAGATAGCCTAACTTCAGGAGA 299
|||||||| || |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 240 GCATTTTAGAGGACGCCTTATGCTTTACCAGTGGTTAGAAGATAGCCTAACTGCAGGAGA 299
Query 300 GAA-GGCTAATGAAGATTTGTATGTTCTCAAAATTGACTCAGAAGAAGTTGATA-AGCCG 357
|| ||| |||||||| ||||||| |||||||||||||||||||||||||| | |||||
Sbjct 300 -AACGGCAAATGAAGACTTGTATGCCCTCAAAATTGACTCAGAAGAAGTTGA-AGAGCCG 357
Query 358 AAAAAGTCTTTGCCTGCAATAAGTGGTAGCGAGGATCAATCTTCACCTCAAAAAAGAACC 417
|| |||||||||||||||||||||||||| ||||||| | | |||||||||||| ||||
Sbjct 358 AACAAGTCTTTGCCTGCAATAAGTGGTAGTGAGGATCTACCATCACCTCAAAAACGAACT 417
Query 418 AGATATTC-TCCTGATGCTGGTGACTTCAAAGGCGTTGAAAGTCATAGCAATACACAAGG 476
||||| || ||||||||||| ||||||||||||||| |||||||| ||||||||||||||
Sbjct 418 AGATA-TCTTCCTGATGCTGCTGACTTCAAAGGCGTAGAAAGTCAAAGCAATACACAAGG 476
Query 477 ATCACCGGATTCACCAACAAGTTGCAGTGTTCCCTCTACTAGCGCCAGTCCTGGAGAAGG 536
||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 477 ATCACTGGATTCACCAACAAGTTGCAGTGTTCCCTCTACTAGTGCCAGTCCTGGAGAAGG 536
Query 537 CATCGCAGAGACTCCCACTAGTCCACAATCAGAGTCCACATCGGTGTACAAACCACCCGA 596
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 CATTGCAGAGACTCCCACTAGTCCACAATCAGAGTCCACATCGGTGTACAAACCACCCGA 596
Query 597 TTTGAACAGAAATATCACTGAGATATTTGGAAAGTTAATTAACATATATAGAGCTTTGGG 656
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 597 TTTGAACAGAAATATCACTGAGATATTTGGAAAGCTAATAAACATATATAGAGCTTTGGG 656
Query 657 TGAAGATAGACGGTCCTTTAGCTATTACAAAGCTATCCCCGTCATTGAAAAGTTCCCCAC 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 TGAAGATAGACGGTCCTTTAGCTATTACAAAGCTATCCCCGTCATTGAAAAGTTCCCCAC 716
Query 717 TAGGATTGAAAGCGTTGATCAGCTCAAACACCTCCCTGGAATCGGAAAGGCAATGAGAGA 776
|| |||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 717 TAAGATTGAAAGCATTGATCAGCTCAAACACCTCCCTGGAATTGGAAAGTCAATGAGAGA 776
Query 777 TCATATTCAAGAGATTGTGACAACAGGGAAGTTGTCCAAGCTTGAACATTTTGAAACAGA 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 TCATATTCAAGAGATTGTGACAACAGGGAAGTTGTCCAAGCTTGAACATTTTGAAACAGA 836
Query 837 TGAGAAGGTTCGTACAATCAGTTTGTTCGGGGAAGTTTGGGGTGTCGGTCCTGCAACTGC 896
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 837 TGAGAAGGTTCGTACAATCAGTTTGTTCGGGGAAGTTTGGGGTATCGGTCCTGCAACTGC 896
Query 897 ACTCAAGCTATATGAGAAAGGACATCGCACACTAGAAGACTTGAAGAATGAGGATTCACT 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 ACTCAAGCTATATGAGAAAGGACATCGCACACTAGAAGACTTGAAGAATGAGGATTCACT 956
Query 957 AACGCATGCACAGAAGTTGGGGTTGAAATATTTTGATGATATCAAAACACGAATTCCACG 1016
|||||||||||||| ||||||||||||||||||||||||||||| |||| |||||| |||
Sbjct 957 AACGCATGCACAGAGGTTGGGGTTGAAATATTTTGATGATATCAGAACAAGAATTCTACG 1016
Query 1017 TCAGGAGGTGCAAGAGATGGAACAACTTTTACAGAGAGTCGGCGAGGAAACTTTGCCTGG 1076
||| |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 1017 TCACGAGGTGCAAGAGATGGAACAACTTCTACAGAGAGTCGGCGAAGAAACTTTGCCTGG 1076
Query 1077 CGTGAATATTGTATGTGGAGGATCATATAGACGTGGGAAAGCTACTTGTGGAGATCTGGA 1136
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1077 TGTGAATATTGTATGTGGAGGATCATTTAGACGTGGGAAAGCTACTTGTGGAGATCTGGA 1136
Query 1137 TATCGTTGTCACCCATCCTGATGGACAAAGTCACAAGGGATTTTTGACAAAGTTTGTAAA 1196
||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 TATCGTTATCACACATCCTGATGGACAAAGTCACAAGGGATTTTTGACAAAGTTTGTAAA 1196
Query 1197 GCGTTTAAAAGAAATGAACTTTTTAAGGGAGGATCTCATCTTCAGCACCCACAGTGAAGA 1256
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1197 GCGTTTAAAAGAAATAAACTTTTTAAGAGAGGATCTCATCTTCAGCACCCACAGTGAAGA 1256
Query 1257 GGGTACTGATTCAGGCGTTGACACGTATTTTGGTTTGTGCACTTATCCTGGTCAGGAGCT 1316
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1257 GGGTACTGATTCAGGCGTTGACACGTATTTTGGCCTGTGCACTTATCCTGGTCAGGAGCT 1316
Query 1317 ACGGCGCCGTATCGATTTTAAGGTCTATCCAAGGGATATCTATTCGTTTGGACTCATAGC 1376
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 1317 ACGGCGCCGTATCGATTTTAAGGTCTATCCAAGGGATATCTATGCATTTGGACTCATAGC 1376
Query 1377 CTGGACAGGGAACGACGTGTTGAACAGAAGGCTGAGATTGCTAGCAGAATCGAAAGGATA 1436
||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 1377 CTGGACAGGGAACGACGTGTTGAACAGAAGGCTGAGACTGCTAGCAGAATCCAAAGGATA 1436
Query 1437 TCGACTTGACGACACTGGACTATTCCCAGCTACTCACAGTTCTAGTGGTAACCGGGGTGC 1496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1437 TCGACTTGACGACACTGGACTATTCCCAGCTACTCACAGTTCTAGTGGTAACCGGGGTGC 1496
Query 1497 TAGAGGAACTGCAAGTCTGAAACTCTCAACGGAGAAACAAGTTTTTGATTTCTTAGGATT 1556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1497 TAGAGGAACTGCAAGTCTGAAACTCTCAACGGAGAAACAAGTTTTTGATTTCTTAGGATT 1556
Query 1557 TCCTTGGCTCGAGCCACACGAGAGGAATCTCTAA 1590
|||||||||||||||||| |||||||||||||||
Sbjct 1557 TCCTTGGCTCGAGCCACAAGAGAGGAATCTCTAA 1590
> Ahg911050 jgi|Araly1|911050|Al_scaffold_0001_1304
Length=993
Score = 1587 bits (859), Expect = 0.0
Identities = 950/994 (96%), Gaps = 6/994 (1%)
Strand=Plus/Plus
Query 602 ACAGAAATATCAC-TGAGATATTTGGAAAGTTAATTAACATATATAGAGCTTTGGGTGAA 660
||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1 ACAGAAATATCACTTGAGATATTTGGAAAGCTAATTAACATATATAGAGCTTTGGGTGAA 60
Query 661 GATAGACGGTCCTTTAGCTATTACAAAGCTATCCCCGTCATTGAAAAGTTCCCCACTAGG 720
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 61 GATAGACGGTCCTTTAGCTATTACAAAGCTATCCCCATCATTGAAAAGTTCCCCACTAGG 120
Query 721 ATTGAAAGCGTTGATCAGCTCAAACACCTCCCTGGAATCGGAAAGGCAATGAGAGATCAT 780
||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 121 ATTGAAAGCGTTGATCAGCTCAAACACTTCCCTGGAATTGGAAAGGCAATGAGAGATCAT 180
Query 781 ATTCAAGAGATTGTGACAACAGGGAAGTTGTCCAAGCTTGAACATTTTGAAACAGATGAG 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ATTCAAGAGATTGTGACAACAGGGAAGTTGTCCAAGCTTGAACATTTTGAAACAGATGAG 240
Query 841 AAGGTTCGTACAATCAGTTTGTTCGGGGAAGTTTGGGGTGTCGGTCCTGCAACTGCACTC 900
||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||||
Sbjct 241 AAGGTTCGTACAATCAGTTTGTTCGGGGAAGTTTGGGGTATCAGTCCTGCGACTGCACTC 300
Query 901 AAGCTATATGAGAAAGGACATCGCACACTAGAAGACTTGAAGAATGAGGATTCACTAACG 960
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 301 AAGCTATATGAGAAAGGACATCGCACACTAGAAGACTTGAAGAACGAGGATTCACTAACG 360
Query 961 CATGCACAGAAG-TTGGGGTTGAAATATTTTGATGATATCAAAACACGAATTCCACGTCA 1019
|||||||| ||| |||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 361 CATGCACA-AAGGTTGGGGTTGAAATATTTTGATGATATCAGAACAAGAATTCCACGTCA 419
Query 1020 GGAGGTGCAAGAGATGGAACAACTTTTACAGAGAGTCGGCGAGGAAACTTTGCCTGGCGT 1079
|||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 420 CGAGGTGCAAGAGGTGGAACAACTTCTACAGAGAGTCGGCGAGGAAACTTTGCCTGGTGT 479
Query 1080 GAATATTGTATGTGGAGGATCATATAGACGTGGGAAAGCTACTTGTGG--AGA-TCTGGA 1136
|||||||||||||||||||||||||||||||||||||||||||||| | | ||| ||
Sbjct 480 GAATATTGTATGTGGAGGATCATATAGACGTGGGAAAGCTACTTGTACCTACAATCTAGA 539
Query 1137 TATCGTTGTCACCCATCCTGATGGACAAAGTCACAAGGGATTTTTGACAAAGTTTGTAAA 1196
||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TATAGTTATCACACATCCTGATGGACAAAGTCACAAGGGATTTTTGACAAAGTTTGTAAA 599
Query 1197 GCGTTTAAAAGAAATGAACTTTTTAAGGGAGGATCTCATCTTCAGCACCCACAGTGAAGA 1256
||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||
Sbjct 600 GCGTTTAAAAGAAATAAACTTTTTAAGAGAAGATCTCATCTTCAGCACCCACAGTGAAGA 659
Query 1257 GGGTACTGATTCAGGCGTTGACACGTATTTTGGTTTGTGCACTTATCCTGGTCAGGAGCT 1316
|||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 660 GGGTACTGATTCAGGCGTTGACACTTATTTTGGCCTGTGCACTTATCCTGGTCAGGAGCT 719
Query 1317 ACGGCGCCGTATCGATTTTAAGGTCTATCCAAGGGATATCTATTCGTTTGGACTCATAGC 1376
|||||||| ||||||||||||||| |||||||||||||||||| | ||||||||||||||
Sbjct 720 ACGGCGCCATATCGATTTTAAGGTTTATCCAAGGGATATCTATGCATTTGGACTCATAGC 779
Query 1377 CTGGACAGGGAACGACGTGTTGAACAGAAGGCTGAGATTGCTAGCAGAATCGAAAGGATA 1436
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 780 TTGGACAGGGAACGACGTGTTGAACAGAAGGCTGAGATTGCTAGCAGAATCCAAAGGATA 839
Query 1437 TCGACTTGACGACACTGGACTATTCCCAGCTACTCACAGTTCTAGTGGTAACCGGGGTGC 1496
||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 840 TCGACTTGATGACACTGGACTGTTCCCAGCTACTCACAGTTCTAGCGGTAACCGGGGTGC 899
Query 1497 TAGAGGAACTGCAAGTCTGAAACTCTCAACGGAGAAACAAGTTTTTGATTTCTTAGGATT 1556
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 900 TAGAGGAACTGCAAGTCTGAAACTCTCAACGGAGAAACAAGTGTTCGATTTCTTAGGATT 959
Query 1557 TCCTTGGCTCGAGCCACACGAGAGGAATCTCTAA 1590
||||||||||||||||||||||||||||||||||
Sbjct 960 TCCTTGGCTCGAGCCACACGAGAGGAATCTCTAA 993
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59573143180
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5