BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G10522.1 Length=980 Score E Sequences producing significant alignments: (Bits) Value Ahg471166 jgi|Araly1|471166|fgenesh2_kg.1__1120__AT1G10522.1 1334 0.0 Ahg950051 jgi|Araly1|950051|scaffold_801938.1 243 3e-63 Ahg917054 jgi|Araly1|917054|Al_scaffold_0008_1805 178 7e-44 Ahg925059 jgi|Araly1|925059|scaffold_200620.1 145 7e-34 > Ahg471166 jgi|Araly1|471166|fgenesh2_kg.1__1120__AT1G10522.1 Length=954 Score = 1334 bits (722), Expect = 0.0 Identities = 888/964 (92%), Gaps = 27/964 (3%) Strand=Plus/Plus Query 1 GAACAGGATCTGTTCTATAGGCTCGTACCTCTGTTTCCTTGATTTCTAAGGAGACAGGCC 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GAACAGGATCTGTTCTATAGGCTCGTACCTCTGTTTCCTTGATTTCTAAGGAGACAGGCC 60 Query 61 CTAAACCCTGGTTGATGAACCATGACCGTGCGGTCAGAGCGTGATTGATGGCTACGATCG 120 || ||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||| Sbjct 61 CTTAACCCTGGTTGATGAACCATGACCGTGCGATCAGAGCGTGATTAACGGCTACGATCG 120 Query 121 TCTTCGGACGCATCCGGTGCTGTAGAGGATCGTTACTCGGCTTGGTCTTCCTTGCCGGGG 180 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 121 TCTTCGGACGCATCCGGTGCTGTAGAGGATCGTTACTCGGCTAGGTCTTCCTTGCCGGGG 180 Query 181 TGGTCGCACGGCGGTCTGACAGAAAA--C-AAGAGATAAGGTTGAAGAGTG----AAGCA 233 |||||||||||||||||||||||||| | |||||||||||||||||||| ||||| Sbjct 181 TGGTCGCACGGCGGTCTGACAGAAAACCCTCAGAGATAAGGTTGAAGAGTGAAAAAAGCA 240 Query 234 AAGC-TTAGTAATGG---C-T-T-CAATGCACGAAGCTCTGTTCTCTTCTCGGCTTCTTC 286 || | ||||||||| | | | |||||||||||||||| ||||||||||||||||||| Sbjct 241 AA-CAGTAGTAATGGCTTCTTCTGCAATGCACGAAGCTCTTTTCTCTTCTCGGCTTCTTC 299 Query 287 AAGTCAATTCTTCTTTTTCCTTCCGTTGCGCTCTTCCAATTATCTCTTCACCAGCTGCAG 346 ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 300 AAGCCAATTCTTCTTCGTCCTTCCGTTGCGCTCTTCCAATTATCTCTTCACCAGCTGCAG 359 Query 347 TATCTTGCGCAATCAAATCGACCCAGTTTTTTAAACAGCGTTGTAGAACCAAAGTGAGGG 406 |||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||| | Sbjct 360 TATCGTGCGCAATCAAATCGACCCAGTTTTTTAAGCAGCGTTGTAGAACCAAATTGAGAG 419 Query 407 ACTTTTCTCTATCTTCACTGTCCCGGAGAGGGTTCGTTTGCAGAGCTGCTGAGTACAAGT 466 |||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||| Sbjct 420 ACTTTTCTCTTTCTTCACAGTCCCGGAGAGGGTTTGTTTGCAGAGCTGCTGAGTACAAGT 479 Query 467 TTCCGGATCCCATACCTGAATTCGCCGAAGCTGAGACTGAGAAATTTAGGGACCATATGT 526 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 480 TTCCGGATCCCATACCTGAATTCGCCGAAGCTGAGACTGAGAAGTTTAGGGACCATATGT 539 Query 527 TAAACAAACTATCAAAAAGAGATCTTTTTGAAGACTCTGTTGATGAAATTGTTGGAGTCT 586 |||| |||||||| || ||||||||||||||||||||||||||||||||||| ||| ||| Sbjct 540 TAAAGAAACTATCCAAGAGAGATCTTTTTGAAGACTCTGTTGATGAAATTGTCGGAATCT 599 Query 587 GCACTGAGATCTTCGAGACGTTCTTGCGCAGTGAGTATGGAGGACCTGGTACACTCTTGG 646 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 600 GCACTGAGATCTTCGGGACGTTCTTGCGCAGTGAGTATGGAGGACCTGGTACACTCTTGG 659 Query 647 TGATACCTTTCATTGACATGGCAGATACTCTCAACGAAAGGGAATTGCCTGGAGGTCCAC 706 | ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 660 TCATACCCTTCATTGACATGGCAGATACTCTCAATGAAAGGGAATTGCCTGGAGGTCCAC 719 Query 707 AAGCCGCCCGAGCAGCTATTAAATGGGCTCAGGATCATGTAGACAAGGACTGGAAGGAAT 766 | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 720 AGGCCGCACGAGCAGCTATTAAATGGGCTCAGGATCATGTAGACAAGGACTGGAAGGAAT 779 Query 767 GGACCGGCACTGATTAGTCCCCTGGGAGCATTAAGTATAATCCGTGAGTTATTTAGTTTA 826 |||| ||||||||||||||| || ||||| || ||||||| ||||||||||||||| | Sbjct 780 GGACTGGCACTGATTAGTCCT-TGA-AGCAT-AATTATAATCTGTGAGTTATTTAGTTCA 836 Query 827 GTAGTGGGGTAGCAGATGTGT-CATTGTAAAACTCT-GATTACTATGTCGTGAAGCACTT 884 ||||||| |||||||||| || || | | | || ||||||| ||| ||||||||||| Sbjct 837 GTAGTGGTGTAGCAGATG-GTACAATATTGAT-TCAAGATTACTGTGTTGTGAAGCACTT 894 Query 885 AATCTTTGATCAAAAAC-TGTTTGGTGTAAACTTGTCCAAACGACTGGAAACAAGAAAAA 943 ||| |||| ||||| | ||||||||||| |||||||||||||||||||| ||||||| Sbjct 895 AATA---GATCCAAAACCT-TTTGGTGTAAATTTGTCCAAACGACTGGAAACTAGAAAAA 950 Query 944 GAAA 947 |||| Sbjct 951 GAAA 954 > Ahg950051 jgi|Araly1|950051|scaffold_801938.1 Length=328 Score = 243 bits (131), Expect = 3e-63 Identities = 153/163 (94%), Gaps = 3/163 (2%) Strand=Plus/Minus Query 42 ATTTCT-AAGGAGACAGGCCCTAAACCCTGGTTGATGAACCATGACCGTGCGGTCAGAGC 100 |||||| || |||||||||||| |||||||||||||||||||||||||||| ||||||| Sbjct 328 ATTTCTCAA-GAGACAGGCCCTTAACCCTGGTTGATGAACCATGACCGTGCTATCAGAGC 270 Query 101 GTGATTGATGGCTACGATCGTCTTCGGACGCATCCGGTGCTGTAGAGGATCGTTACTCGG 160 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 269 GTGATTGACGGCTACGATCGTCTTCGGACGCATCCGGTGCTGTAGAGGATCGTTACTCGG 210 Query 161 CTTGGT-CTTCCTTGCCGGGGTGGTCGCACGGCGGTCTGACAG 202 || ||| || ||||||||||||||| ||||||||||||||||| Sbjct 209 CTCGGTTCTACCTTGCCGGGGTGGTTGCACGGCGGTCTGACAG 167 > Ahg917054 jgi|Araly1|917054|Al_scaffold_0008_1805 Length=744 Score = 178 bits (96), Expect = 7e-44 Identities = 121/133 (91%), Gaps = 1/133 (1%) Strand=Plus/Minus Query 64 AACCCTGGTTGATGAACCATGACCGTGCGGTCAGAGCGTGATTGATGGCTACGATCGTCT 123 ||||||||||||||||||||||||||||| ||||||||||||| | ||| ||||| |||| Sbjct 742 AACCCTGGTTGATGAACCATGACCGTGCGATCAGAGCGTGATTAACGGCCACGATTGTCT 683 Query 124 TCGGACGCATCCGGTGCTGTAGAGGATCGTTACTCGGCTTGGT-CTTCCTTGCCGGGGTG 182 ||||| ||||| ||||||||||||||||||||||||||| || || ||||||||||||| Sbjct 682 TCGGATGCATCTGGTGCTGTAGAGGATCGTTACTCGGCTCAGTTCTACCTTGCCGGGGTG 623 Query 183 GTCGCACGGCGGT 195 || |||||||||| Sbjct 622 GTTGCACGGCGGT 610 > Ahg925059 jgi|Araly1|925059|scaffold_200620.1 Length=241 Score = 145 bits (78), Expect = 7e-34 Identities = 135/161 (84%), Gaps = 10/161 (6%) Strand=Plus/Minus Query 1 GAACAGGATCTGTTCTATAGGCTCGTACCTCTGTTTCCTTGATTTCTAAGGAGACAGGCC 60 |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| Sbjct 235 GAACAGGATCTGTTCTATAGTCTCGTACATCTGTTTCCTTGATTTCTAAGGAGACAGGCC 176 Query 61 CT-AAACCCTGGTTGATGAACCAT-GACCGTGCGGTCAGAGCGTGATTGATGGCTACGAT 118 || ||||| ||||||||||| || | ||||| | | ||| |||||||| ||| ||| Sbjct 175 CTTAAACC-TGGTTGATGAATCAAAG-CCGTGTGACCTGAGTGTGATTGACGGCG--GAT 120 Query 119 CGTCT-T-CGGACGCATCCGGTGCTGTAGAGGATCGTTACT 157 |||| | |||| || || ||||||||||||||| |||| Sbjct 119 TGTCTCTTCGGA-GCC-CCTCTGCTGTAGAGGATCGCTACT 81 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36407385735 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5