BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G10522.1
Length=980
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471166 jgi|Araly1|471166|fgenesh2_kg.1__1120__AT1G10522.1 1334 0.0
Ahg950051 jgi|Araly1|950051|scaffold_801938.1 243 3e-63
Ahg917054 jgi|Araly1|917054|Al_scaffold_0008_1805 178 7e-44
Ahg925059 jgi|Araly1|925059|scaffold_200620.1 145 7e-34
> Ahg471166 jgi|Araly1|471166|fgenesh2_kg.1__1120__AT1G10522.1
Length=954
Score = 1334 bits (722), Expect = 0.0
Identities = 888/964 (92%), Gaps = 27/964 (3%)
Strand=Plus/Plus
Query 1 GAACAGGATCTGTTCTATAGGCTCGTACCTCTGTTTCCTTGATTTCTAAGGAGACAGGCC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GAACAGGATCTGTTCTATAGGCTCGTACCTCTGTTTCCTTGATTTCTAAGGAGACAGGCC 60
Query 61 CTAAACCCTGGTTGATGAACCATGACCGTGCGGTCAGAGCGTGATTGATGGCTACGATCG 120
|| ||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||
Sbjct 61 CTTAACCCTGGTTGATGAACCATGACCGTGCGATCAGAGCGTGATTAACGGCTACGATCG 120
Query 121 TCTTCGGACGCATCCGGTGCTGTAGAGGATCGTTACTCGGCTTGGTCTTCCTTGCCGGGG 180
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 121 TCTTCGGACGCATCCGGTGCTGTAGAGGATCGTTACTCGGCTAGGTCTTCCTTGCCGGGG 180
Query 181 TGGTCGCACGGCGGTCTGACAGAAAA--C-AAGAGATAAGGTTGAAGAGTG----AAGCA 233
|||||||||||||||||||||||||| | |||||||||||||||||||| |||||
Sbjct 181 TGGTCGCACGGCGGTCTGACAGAAAACCCTCAGAGATAAGGTTGAAGAGTGAAAAAAGCA 240
Query 234 AAGC-TTAGTAATGG---C-T-T-CAATGCACGAAGCTCTGTTCTCTTCTCGGCTTCTTC 286
|| | ||||||||| | | | |||||||||||||||| |||||||||||||||||||
Sbjct 241 AA-CAGTAGTAATGGCTTCTTCTGCAATGCACGAAGCTCTTTTCTCTTCTCGGCTTCTTC 299
Query 287 AAGTCAATTCTTCTTTTTCCTTCCGTTGCGCTCTTCCAATTATCTCTTCACCAGCTGCAG 346
||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 AAGCCAATTCTTCTTCGTCCTTCCGTTGCGCTCTTCCAATTATCTCTTCACCAGCTGCAG 359
Query 347 TATCTTGCGCAATCAAATCGACCCAGTTTTTTAAACAGCGTTGTAGAACCAAAGTGAGGG 406
|||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||| |
Sbjct 360 TATCGTGCGCAATCAAATCGACCCAGTTTTTTAAGCAGCGTTGTAGAACCAAATTGAGAG 419
Query 407 ACTTTTCTCTATCTTCACTGTCCCGGAGAGGGTTCGTTTGCAGAGCTGCTGAGTACAAGT 466
|||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 420 ACTTTTCTCTTTCTTCACAGTCCCGGAGAGGGTTTGTTTGCAGAGCTGCTGAGTACAAGT 479
Query 467 TTCCGGATCCCATACCTGAATTCGCCGAAGCTGAGACTGAGAAATTTAGGGACCATATGT 526
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 480 TTCCGGATCCCATACCTGAATTCGCCGAAGCTGAGACTGAGAAGTTTAGGGACCATATGT 539
Query 527 TAAACAAACTATCAAAAAGAGATCTTTTTGAAGACTCTGTTGATGAAATTGTTGGAGTCT 586
|||| |||||||| || ||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 540 TAAAGAAACTATCCAAGAGAGATCTTTTTGAAGACTCTGTTGATGAAATTGTCGGAATCT 599
Query 587 GCACTGAGATCTTCGAGACGTTCTTGCGCAGTGAGTATGGAGGACCTGGTACACTCTTGG 646
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GCACTGAGATCTTCGGGACGTTCTTGCGCAGTGAGTATGGAGGACCTGGTACACTCTTGG 659
Query 647 TGATACCTTTCATTGACATGGCAGATACTCTCAACGAAAGGGAATTGCCTGGAGGTCCAC 706
| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 660 TCATACCCTTCATTGACATGGCAGATACTCTCAATGAAAGGGAATTGCCTGGAGGTCCAC 719
Query 707 AAGCCGCCCGAGCAGCTATTAAATGGGCTCAGGATCATGTAGACAAGGACTGGAAGGAAT 766
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 AGGCCGCACGAGCAGCTATTAAATGGGCTCAGGATCATGTAGACAAGGACTGGAAGGAAT 779
Query 767 GGACCGGCACTGATTAGTCCCCTGGGAGCATTAAGTATAATCCGTGAGTTATTTAGTTTA 826
|||| ||||||||||||||| || ||||| || ||||||| ||||||||||||||| |
Sbjct 780 GGACTGGCACTGATTAGTCCT-TGA-AGCAT-AATTATAATCTGTGAGTTATTTAGTTCA 836
Query 827 GTAGTGGGGTAGCAGATGTGT-CATTGTAAAACTCT-GATTACTATGTCGTGAAGCACTT 884
||||||| |||||||||| || || | | | || ||||||| ||| |||||||||||
Sbjct 837 GTAGTGGTGTAGCAGATG-GTACAATATTGAT-TCAAGATTACTGTGTTGTGAAGCACTT 894
Query 885 AATCTTTGATCAAAAAC-TGTTTGGTGTAAACTTGTCCAAACGACTGGAAACAAGAAAAA 943
||| |||| ||||| | ||||||||||| |||||||||||||||||||| |||||||
Sbjct 895 AATA---GATCCAAAACCT-TTTGGTGTAAATTTGTCCAAACGACTGGAAACTAGAAAAA 950
Query 944 GAAA 947
||||
Sbjct 951 GAAA 954
> Ahg950051 jgi|Araly1|950051|scaffold_801938.1
Length=328
Score = 243 bits (131), Expect = 3e-63
Identities = 153/163 (94%), Gaps = 3/163 (2%)
Strand=Plus/Minus
Query 42 ATTTCT-AAGGAGACAGGCCCTAAACCCTGGTTGATGAACCATGACCGTGCGGTCAGAGC 100
|||||| || |||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 328 ATTTCTCAA-GAGACAGGCCCTTAACCCTGGTTGATGAACCATGACCGTGCTATCAGAGC 270
Query 101 GTGATTGATGGCTACGATCGTCTTCGGACGCATCCGGTGCTGTAGAGGATCGTTACTCGG 160
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 269 GTGATTGACGGCTACGATCGTCTTCGGACGCATCCGGTGCTGTAGAGGATCGTTACTCGG 210
Query 161 CTTGGT-CTTCCTTGCCGGGGTGGTCGCACGGCGGTCTGACAG 202
|| ||| || ||||||||||||||| |||||||||||||||||
Sbjct 209 CTCGGTTCTACCTTGCCGGGGTGGTTGCACGGCGGTCTGACAG 167
> Ahg917054 jgi|Araly1|917054|Al_scaffold_0008_1805
Length=744
Score = 178 bits (96), Expect = 7e-44
Identities = 121/133 (91%), Gaps = 1/133 (1%)
Strand=Plus/Minus
Query 64 AACCCTGGTTGATGAACCATGACCGTGCGGTCAGAGCGTGATTGATGGCTACGATCGTCT 123
||||||||||||||||||||||||||||| ||||||||||||| | ||| ||||| ||||
Sbjct 742 AACCCTGGTTGATGAACCATGACCGTGCGATCAGAGCGTGATTAACGGCCACGATTGTCT 683
Query 124 TCGGACGCATCCGGTGCTGTAGAGGATCGTTACTCGGCTTGGT-CTTCCTTGCCGGGGTG 182
||||| ||||| ||||||||||||||||||||||||||| || || |||||||||||||
Sbjct 682 TCGGATGCATCTGGTGCTGTAGAGGATCGTTACTCGGCTCAGTTCTACCTTGCCGGGGTG 623
Query 183 GTCGCACGGCGGT 195
|| ||||||||||
Sbjct 622 GTTGCACGGCGGT 610
> Ahg925059 jgi|Araly1|925059|scaffold_200620.1
Length=241
Score = 145 bits (78), Expect = 7e-34
Identities = 135/161 (84%), Gaps = 10/161 (6%)
Strand=Plus/Minus
Query 1 GAACAGGATCTGTTCTATAGGCTCGTACCTCTGTTTCCTTGATTTCTAAGGAGACAGGCC 60
|||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 235 GAACAGGATCTGTTCTATAGTCTCGTACATCTGTTTCCTTGATTTCTAAGGAGACAGGCC 176
Query 61 CT-AAACCCTGGTTGATGAACCAT-GACCGTGCGGTCAGAGCGTGATTGATGGCTACGAT 118
|| ||||| ||||||||||| || | ||||| | | ||| |||||||| ||| |||
Sbjct 175 CTTAAACC-TGGTTGATGAATCAAAG-CCGTGTGACCTGAGTGTGATTGACGGCG--GAT 120
Query 119 CGTCT-T-CGGACGCATCCGGTGCTGTAGAGGATCGTTACT 157
|||| | |||| || || ||||||||||||||| ||||
Sbjct 119 TGTCTCTTCGGA-GCC-CCTCTGCTGTAGAGGATCGCTACT 81
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36407385735
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5