BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G10530.1
Length=996
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471168 jgi|Araly1|471168|fgenesh2_kg.1__1122__AT1G10530.1 1131 0.0
> Ahg471168 jgi|Araly1|471168|fgenesh2_kg.1__1122__AT1G10530.1
Length=959
Score = 1131 bits (612), Expect = 0.0
Identities = 783/861 (91%), Gaps = 29/861 (3%)
Strand=Plus/Plus
Query 145 ATATGGGGAATTGTCAGGCGGTGAATGCGGCAGTGCTGGTTCTACAACATCCCGGCGGGA 204
||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||
Sbjct 112 ATATGGGGAATTGTCAGGCGGTGAACGCGGCGGTGCTGGTTCTACAACACCCCGGCGGGA 171
Query 205 TTATCGACCGGTACTATAGCTCTGTATCCGTCACCGAGGTCATGGCTATGTATCCTGGTC 264
||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 172 AAATCGACCGGTACTATGGCTCTGTCTCCGTCAGCGAGGTCATGGCTATGTATCCTGGTC 231
Query 265 ACTACGTCTCTCTCATCATTCCTTTGTCAGAGGAGGAAGAGAAGAATATTCCAGCGACGG 324
||||||||||||||||||||||||| | ||||||||||||| ||||||||| |||||||
Sbjct 232 ACTACGTCTCTCTCATCATTCCTTTAACGGAGGAGGAAGAGAGGAATATTCCGGCGACGG 291
Query 325 AGAAGGGAGATGATAAGAAGCAGAGGAAGGCTGTGAGGTTTACACGTGTCCAGCTTCTCC 384
|||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 292 TGAAGGGAGATGATAAGAAACAGAGGAAGGCTGTGAGGTTTACACGTGTTCAGCTTCTCC 351
Query 385 GGCCAACGGAGAATCTTGTGCTCGGTCACGCTTACCGGCTCATTACTTCACAAGAAGTGA 444
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 GGCCAACGGAGAATCTCGTGCTCGGTCACGCTTACCGGCTCATTACTTCACAAGAAGTGA 411
Query 445 TGAAGGTGTTACGGGAAAAGAAGAGCGCCAAGACGAAAAAACATCAGATTGAGA-AGACA 503
||||||| |||||||||||||||||||||||||||||||| ||||||||||||| | ||
Sbjct 412 TGAAGGTTTTACGGGAAAAGAAGAGCGCCAAGACGAAAAAGCATCAGATTGAGACA-ACG 470
Query 504 ACCACGGCGAAGAAGTTCTCGGACAAGAAAGTTCCGGAGAAGAAACAAGGGAAGCAATTT 563
|||||| ||| ||||| ||||| |||||||| |||||||||||||||||||||||||||
Sbjct 471 ACCACGTTGAACAAGTTGTCGGAGAAGAAAGTCCCGGAGAAGAAACAAGGGAAGCAATTT 530
Query 564 CGTGTTATAAGGAATTCAACTTCCCTCTTAAAGTCTAAAACATGGAGGCCGTCTCTTCAG 623
||||| |||| ||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 531 CGTGTGATAACGAATTCAACTTCCCTTTTAAAGTCTAAAACATGGAGGCCATCTCTTCAG 590
Query 624 AGCATCTCCGAAGCTACTAGCTGAATGTTTTTGGTTTTTGTTCGA---A--A----CAGT 674
||||||||||||||||| ||||||||||| ||||||||||||||| | | ||||
Sbjct 591 AGCATCTCCGAAGCTACGAGCTGAATGTTGTTGGTTTTTGTTCGAGGGACGAGAAACAGT 650
Query 675 ATCTGGATCTAGAGTGGAGAGCCTGATCCGAAACTCTACTGAATAATTTTTTGGTTCTGt 734
|||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||
Sbjct 651 ATCTGGATCTAGAGTGGAGAACCTGATCCGAAACTCTACTGAATAAATTTT-GGTTCTGT 709
Query 735 t---ttttttt-tt--CCTGGATATTACAGAGGATAAACGGATGGAGTCTAGATGAAGAT 788
| ||||||| || ||||| ||||||||||||| || | || | |||| |||||
Sbjct 710 TCCCTTTTTTTGTTTGCCTGGTTATTACAGAGGATGAA-G--TG---T--AGATCAAGAT 761
Query 789 GTGAAGAGATAAGTACAGAGAAAGCTCAAGAGAGTCAACAAAACAGAACTTCTTCTTCCt 848
|||| |||||||||||||||||||||||||||||||| || |||||| ||||||||||||
Sbjct 762 GTGACGAGATAAGTACAGAGAAAGCTCAAGAGAGTCATCAGAACAGAGCTTCTTCTTCCT 821
Query 849 tttttttCCCTCTATCGTCGATGTATATATTTTTGCAGATGGGGAAATCGATGGAAGTTT 908
|||||||| |||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 822 TTTTTTTCTCTCTATCGTCGATGTATATATTTTCGCAGATGGAGAAATCGATGGAAGTTT 881
Query 909 GTAAGAAGTGTGGTTTTTGTTGATGTGTGAGATTGATTCAGAGGACACAAAGCTTCTGAA 968
||||||||||||||||| ||||||||| |||||||||||||||| ||| ||||||||||
Sbjct 882 GTAAGAAGTGTGGTTTT-GTTGATGTG--AGATTGATTCAGAGGAAACAGAGCTTCTGAA 938
Query 969 TAAGAACAATAAAAAGCTTTT 989
|| |||||| ||| |||||||
Sbjct 939 TATGAACAAGAAAGAGCTTTT 959
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37017352407
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5