BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G10538.1

Length=251
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg919838 jgi|Araly1|919838|scaffold_101119.1                        215    1e-55


> Ahg919838 jgi|Araly1|919838|scaffold_101119.1
Length=343

 Score =  215 bits (116),  Expect = 1e-55
 Identities = 160/179 (89%), Gaps = 11/179 (6%)
 Strand=Plus/Plus

Query  74   GATAGATGTTACGCTAGAGAGATGGCT-AAGTTGTTAGATCCTAAAGGAAAGTATTTCAG  132
            |||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  11   GATAGACGTTATGCTAGAGAGATGGCTAAAGTTGTTAGATCCTAAAGGAAAGTATTTCAG  70

Query  133  CGATCGAATTATTTCTCGTGATGATCGTACGGTGAGACATAAGAAGAATCTTGATGTTTT  192
            |||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||   
Sbjct  71   CGATCGGATTATTTCTCGTGATGATGGTACGGTGAGACATAAGAAGAGTCTTGATGT---  127

Query  193  TGATGGGAAACGAAGAAGCAGAAGCTGTTCTTATTGTCGATGACTCGAAGAATGTTTGG  251
             ||||||||||||||||||      ||||||| |||||||||| ||||||| |||||||
Sbjct  128  -GATGGGAAACGAAGAAGC------TGTTCTTTTTGTCGATGAATCGAAGATTGTTTGG  179



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 8706923508


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5