BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G10540.1
Length=1951
Score E
Sequences producing significant alignments: (Bits) Value
Ahg910785 jgi|Araly1|910785|Al_scaffold_0001_1039 2532 0.0
Ahg925053 jgi|Araly1|925053|scaffold_200614.1 1201 0.0
> Ahg910785 jgi|Araly1|910785|Al_scaffold_0001_1039
Length=1620
Score = 2532 bits (1371), Expect = 0.0
Identities = 1538/1621 (95%), Gaps = 2/1621 (0%)
Strand=Plus/Plus
Query 172 ATGGCAGGTGATGGCGTAGAAAATGCAAAGCCACCGCAGAAACAGGAAGATCTTCAGCCT 231
|||| ||||||||||| || |||| || ||||||||||||| ||||||||||||||||||
Sbjct 1 ATGGTAGGTGATGGCGGAGGAAATCCAGAGCCACCGCAGAAGCAGGAAGATCTTCAGCCT 60
Query 232 CATCCGGTGAAGGATCAACTTTACGGTATCACTTACTGCCTCACAAGTCCTCCTCCTTGG 291
|||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 61 CATCCGGTAAAGGATCAACTTTACTCTATCACTTATTGCCTCACAAGTCCTCCTCCTTGG 120
Query 292 CCGGAGACAATACTTCTGGGGTTTCAACACTACTTAGTGATGCTTGGAACAACTGTTCTC 351
|| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 121 CCTGAGACAATACTTCTGGGGTTTCAACACTACTTGGTGATGCTTGGAACTACTGTTCTC 180
Query 352 ATTCCAACAATGTTAGTTTCAAAGATTGATGCAAGAAACGAAGATAAGGTAAAGTTGATT 411
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ATTCCAACTATGTTAGTTTCAAAGATTGATGCAAGAAACGAAGATAAGGTAAAGTTGATT 240
Query 412 CAGACGTTGCTCTTTGTGTCTGGAATCAACACGTTATTTCAAAGCTTCTTTGGGACTCGT 471
||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 241 CAGACATTGCTCTTTGTGTCTGGAATCAACACGTTATTACAAAGCTTCCTTGGGACTCGT 300
Query 472 CTTCCTGCTGTCATTGGAGCTTCTTACTCTTATGTGCCAACTACAATGTCAATCGTCTTA 531
||||||||||||||||||||||||||| | ||||||||||| |||||||||||||| |||
Sbjct 301 CTTCCTGCTGTCATTGGAGCTTCTTACACCTATGTGCCAACCACAATGTCAATCGTTTTA 360
Query 532 GCTGCTCGTTACAATGACATTATGGATCCTCAAAAGAGATTTGAACAGATCATGCGTGGA 591
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 361 GCTGCTCGTTACAATGACATTATGGATCCTCAAGAGAAATTTGAACAGATCATGCGTGGA 420
Query 592 ATCCAAGGTGCTCTTATTATTGCCTCATTTCTTCATATCCTTGTTGGTTTCAGTGGCCTT 651
||||||||||||||||||||||||||| | ||||| |||||||| |||||||| ||||||
Sbjct 421 ATCCAAGGTGCTCTTATTATTGCCTCACTACTTCAGATCCTTGTAGGTTTCAGCGGCCTT 480
Query 652 TGGCGCAATGTTA-CTAGGTTTTTGAGTCCCTTATCTGCAGTTCCTCTTGTAGCCTTTTC 710
|||||||||| || ||||||||||||||||||||||||| ||||||||||| || |||||
Sbjct 481 TGGCGCAATG-TAGCTAGGTTTTTGAGTCCCTTATCTGCGGTTCCTCTTGTGGCATTTTC 539
Query 711 TGGCTTTGGACTCTATGAACAAGGATTCCCTATGCTAGCAAAATGCATTGAGATTGGACT 770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TGGCTTTGGACTCTATGAACAAGGATTCCCTATGCTAGCAAAATGCATTGAGATTGGACT 599
Query 771 GCCTGAGATCATACTTCTTGTCATATTCTCACAGTACATTCCTCATCTGATGCAAGGAGA 830
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GCCTGAGATCATACTTCTTGTCATATTCTCACAGTACATTCCTCATCTGATGCAAGGAGA 659
Query 831 AACATGTTCTAACTTCTTCCACCGATTTGCTGTGATATTCTCAGTGGTGATTGTGTGGCT 890
||||| |||||||||||||||||| |||||||||||| |||||||||||||||| |||||
Sbjct 660 AACATATTCTAACTTCTTCCACCGGTTTGCTGTGATAATCTCAGTGGTGATTGTATGGCT 719
Query 891 TTATGCATACATTCTAACCATTGGTGGGGCTTATAGTAACACAGAAATCAATACTCAAAT 950
||||||||||||||| |||||||||||||| |||||| |||||| |||||||||||||||
Sbjct 720 TTATGCATACATTCTCACCATTGGTGGGGCCTATAGTGACACAGGAATCAATACTCAAAT 779
Query 951 CAGTTGCAGAACCGACCGTGCTGGCATCATTAGCGCTTCTCCATGGATTAGAGTGCCTCA 1010
|||||||||||| || || ||||| ||||||||||| |||||||||||||||||||| |
Sbjct 780 CAGTTGCAGAACTGATCGCGCTGGTATCATTAGCGCCGCTCCATGGATTAGAGTGCCTTA 839
Query 1011 CCCTATTCAATGGGGAGGAGCTCCAACTTTCAATGCAGGGGATATTTTTGCTATGATGGC 1070
|||| |||||||||||||| |||||||||| ||||||||||| |||||||||||||| ||
Sbjct 840 CCCTCTTCAATGGGGAGGACCTCCAACTTTTAATGCAGGGGAAATTTTTGCTATGATTGC 899
Query 1071 TGCTTCTTTCGTTTCTCTTGTCGAGTCTACAGGGACATACATTGCTGTATCGAGATATGC 1130
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 900 TGCTTCTTTCGTTTCTCTCGTTGAGTCTACAGGGACATACATTGCTGTATCGAGATATGC 959
Query 1131 AAGTGCAACACCAATCCCACCTTCTGTGCTTAGTCGTGGAATCGGTTGGCAGGGATTTGG 1190
||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 960 AAGTGCAACGCCAATCCCACCTTCTGTGCTTGGCCGTGGAATCGGTTGGCAGGGATTTGG 1019
Query 1191 AATTCTTCTCTGTGGATTATTTGGAGCAGGAAATGCAACATCCGTGTCTGTAGAGAATGC 1250
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1020 AATTCTTCTCTGTGGATTATTTGGAGCAGGAAATGCAACATCTGTGTCTGTGGAGAATGC 1079
Query 1251 CGGCTTGTTGGCTGTAACACGCGTTGGTAGTAGACGTGTAATTCAAGTAGCAGCTGGATT 1310
||| |||||||||||||| ||||||||||||||| | |||||||||||| |||| |||||
Sbjct 1080 CGGTTTGTTGGCTGTAACGCGCGTTGGTAGTAGAAGAGTAATTCAAGTATCAGCCGGATT 1139
Query 1311 CATGATCTTCTTCTCCATTCTTGGTAAATTTGGGGCTATCTTTGCTTCGATTCCAGCTCC 1370
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1140 CATGATCTTCTTCTCCATTCTTGGTAAATTTGGGGCCATATTTGCTTCGATTCCAGCTCC 1199
Query 1371 TATCGTCGCAGCTCTTTACTGTTTGTTCTTCTCATACGTTGGTGCTGGTGGTCTAAGTCT 1430
|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1200 TATCATCGCAGCTCTTTACTGTTTGTTCTTCTCATACGTTGGTGCGGGTGGTCTAAGTCT 1259
Query 1431 AATCCAGTTCTGCAATCTGAACAGTTTCAGAACTAAGTTCATTCTTGGATTCTCCATCTT 1490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 AATCCAGTTCTGCAATCTGAACAGTTTCAGAACTAAGTTCATTCTTGGATTCTCCATCTT 1319
Query 1491 CATGGGCTTATCCATACCTCAATACTTTTACCAGTACACAACTTTGGAAACCTATGGACC 1550
|||||||||||| |||||||||||||| ||||||||||||||||| |||| ||||||||
Sbjct 1320 CATGGGCTTATCAATACCTCAATACTTCTACCAGTACACAACTTTTGAAAATTATGGACC 1379
Query 1551 CGTTCGGACATCCGCAACATGGTTCAACAACATTATAAACGTTCCTTTCTCATCTAAAGC 1610
|||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1380 CGTTCGAACATCCGCAACATCTTTCAACAACATTATAAACGTTCCTTTCTCATCTAAAGC 1439
Query 1611 ATTTGTTTCCGGGATTTTGGCCTTCTTTCTAGACACGACATTGCCTCCAAAGGACAAGAC 1670
||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
Sbjct 1440 ATTTGTTTCCGGGATTTTGGCCTTCTTTCTAGATATGACATTGCCTCCAAAGGACAAGGC 1499
Query 1671 GACAAAGAAAGATCGAGGACTAGTTTGGTGGAAGCGATTTAAATCGTTCCAATCTGATAA 1730
|||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 1500 GACAAAGAAAGATCGAGGACTAGTATGGTGGAAGCGATTTAAATCGTTCAAATCTGATAA 1559
Query 1731 CAGAAGCGAAGAGTTCTACTCTTTGCCTCTCAATCTCAGCAAGTACTTTCCTTCTCACTG 1790
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1560 CAGAAGCGAAGAGTTCTACTCTTTGCCTCTCAATCTCAGCAAGTACTTTCCTTCTCACTG 1619
Query 1791 A 1791
|
Sbjct 1620 A 1620
> Ahg925053 jgi|Araly1|925053|scaffold_200614.1
Length=1654
Score = 1201 bits (650), Expect = 0.0
Identities = 1307/1617 (81%), Gaps = 73/1617 (5%)
Strand=Plus/Plus
Query 201 GCCACCGC-AGAAACAGGAAGATCTTCAGCCTCATCCGGTGAAGGATCAACTTTAC-GGT 258
||| |||| | ||||| || || ||| |||| ||||| ||||| |||||||||| | |
Sbjct 53 GCCGCCGCTA-AAACAAGATGAGCTTGAGCCACATCCCGTGAAAGATCAACTTT-CTTCT 110
Query 259 ATCACTTACTGCCTCACAAGTCCTCCTCCTTGGCCGGAGACAATACTTCTGGGGTTTCAA 318
||| |||| ||| |||||||||||||||||||||||||| |||||||| | || |||||
Sbjct 111 ATCTCTTATTGCATCACAAGTCCTCCTCCTTGGCCGGAGGCAATACTTTTAGGTTTTCAG 170
Query 319 CACTACTTAGTGATGCTTGGAACAACTGTTCTCATTCCAACA-ATGTTAGTTTCAAAGAT 377
|| ||||| ||||||||||||||||||||||||||||||||| || |||||| || ||||
Sbjct 171 CATTACTTGGTGATGCTTGGAACAACTGTTCTCATTCCAACATAT-TTAGTTCCACAGAT 229
Query 378 TGATGCAAGAAACGAAGATAAGGTAAAGTTGATTCAGACGTTGCTCTTTGTGTCTGGAAT 437
| || |||| ||||| |||| |||| || ||||||| ||||| ||||| |||||| |
Sbjct 230 GGGTGGTGGAAATGAAGAGAAGGCAAAGATGGTTCAGACATTGCTTTTTGTTTCTGGACT 289
Query 438 CAACACGTTATTTCAAAGCTTCTTTGGGACTCGTCTTCCTGCTGTCATTGGAG-CTTCTT 496
||||| ||||| |||||||||||||||||||| ||||| || |||||||||| || |||
Sbjct 290 TAACACTTTATTGCAAAGCTTCTTTGGGACTCGACTTCCCGCGGTCATTGGAGGCT-CTT 348
Query 497 ACT-CTTATGTGCCAACTACAATGTCAATCGTCTTAGCTGCTCGTTACAATGACATTATG 555
| | | ||| | ||||| || | || ||| | || |||| ||| |||| ||||||| |
Sbjct 349 A-TACCTATTTACCAACCACTCTTTCGATCATTTTGGCTGGTCGGTACAGTGACATTCTT 407
Query 556 GATCCTCAAAAGAGATTTGAACAG-ATCATGCGTGGAATCCAAGGTGCTCTTATTATTGC 614
|||||||| ||| |||| || || || ||||| |||||||| ||||||||||| ||||
Sbjct 408 GATCCTCAGGAGAAATTT-AAGAGGATAATGCGAGGAATCCAGGGTGCTCTTATCGTTGC 466
Query 615 CTC-ATTTCTTCATATCCTTGTTGGTTTCAGTGGCCTTTGGCGCAATGTTACT-AGGTTT 672
||| ||| ||||| ||| ||||||| ||||| || |||||||||||||| | | ||| |
Sbjct 467 CTCGATT-CTTCAGATCGTTGTTGGCTTCAGCGGGCTTTGGCGCAATGT-AGTTAGGCTC 524
Query 673 TTGAGTCC-CTTATCTGCAGTTCCTCTTGTAGC-CTTTTCTGGCTTTGGACTCTATGAAC 730
|||||||| || |||||||||||||| ||||| || | || |||||||| ||||| |
Sbjct 525 TTGAGTCCTCTC-TCTGCAGTTCCTCTAGTAGCACTAGCC-GGTTTTGGACTTTATGAGC 582
Query 731 AAGGATTCCCTATGCTAGCAAAATGCATTGAGATTGGACTGCCTGAGATCATACTTCTTG 790
| || |||||| ||||||| |||||||||||||||||||||||||| ||||| |||||
Sbjct 583 ACGGTTTCCCTCTGCTAGCCAAATGCATTGAGATTGGACTGCCTGAAATCATCCTTCTAC 642
Query 791 TCATATTCTCACAGTACATTCCTCATCTGATGCAAGGAGAAACATGTTCTAACTTCTTCC 850
| |||||||||||||||||||||||||| || | |||||||| | | || | ||| |
Sbjct 643 TTATATTCTCACAGTACATTCCTCATCTCATTCGAGGAGAAAGA----C-AAGT-CTTTC 696
Query 851 ACCGATTTGCTGTGATATTCTCAGTGGTGATTGTGTGGCTTTATGCATACAT-T-CTAAC 908
| ||||||||||| || ||||| ||||| || || ||| |||| ||| ||| | || ||
Sbjct 697 ATCGATTTGCTGTTATTTTCTCTGTGGTTATCGTCTGGATTTACGCA--CATCTACTTAC 754
Query 909 CATTGGTGGGGCTTATA-GTAACACAGAAATCAATACTCAAATCA-GTTGCAGAACCGAC 966
| ||||||| || |||| | ||||||| |||||| ||||| | || |||||||||| ||
Sbjct 755 CGTTGGTGGAGCCTATAAG-AACACAGGAATCAACACTCAGA-CAAGTTGCAGAACAGAT 812
Query 967 CGTGCTGGCATCATTAGCG-CTTCTCCATGGATTAGAGTGCCTCACCCTATTCAATGGGG 1025
||| | ||| | ||| | | | |||||||||| ||||||||| | ||| ||||||||||
Sbjct 813 CGTTCCGGCCTTATTGGAGGCG-CTCCATGGATAAGAGTGCCTTATCCTTTTCAATGGGG 871
Query 1026 AGGAGCTCCAAC-TTTCAATGCAGGGGATATTTTT-GCTATGATGGCTGCTTC-TTTCGT 1082
| ||||||| ||||| ||| || || | ||| ||||||||||||| ||| ||| ||
Sbjct 872 AC---CTCCAACATTTCA-TGCCGGTGA-AGCTTTCGCTATGATGGCTGTTTCATTT-GT 925
Query 1083 TTCTCTTGTCGAGTCTACAGGGACATACATTGCTGTATCGAGATATGCAAGTGCAACACC 1142
||| ||| | ||||| |||||||| ||||||| ||| || || | |||||| ||||| ||
Sbjct 926 TTCCCTTATTGAGTCCACAGGGACTTACATTGTTGTGTCAAGGTTTGCAAGCGCAACTCC 985
Query 1143 AATC-CCACCTTCTGTGCTTAGTCGTGGAATCGGTTGGCAGGGATTTGGAATTCTTCTCT 1201
| | ||||||||||| ||||| |||||||||||||||||||| ||||| | |||||||
Sbjct 986 AC-CGCCACCTTCTGTTCTTAGCCGTGGAATCGGTTGGCAGGGCGTTGGAGTACTTCTCT 1044
Query 1202 GTGGATTATTTGGAGCAGGAAATGCAACATCCGTGTCTGTAGAGAATGCCGGCTTGTTGG 1261
|||||||||||||||||||||||| | |||| || || ||||| |||||||| ||||| |
Sbjct 1045 GTGGATTATTTGGAGCAGGAAATGGAGCATCTGTATCAGTAGAAAATGCCGGTTTGTTAG 1104
Query 1262 CTG-TAACACGCGTTGGTAGTAGACGTGTAATTCAAGTAGCAGCTGGATTCATGATCTTC 1320
| | |||||||||||||||| ||| | ||| ||||| || ||||||| |||||||| |||
Sbjct 1105 C-GCTAACACGCGTTGGTAGCAGAAGGGTAGTTCAAATATCAGCTGGTTTCATGATTTTC 1163
Query 1321 TTCTCCATTCTTGGTAAATTTGGGGCTATCTTTGCTTCGATTCCAGCTCCTATCGTCGCA 1380
|||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||
Sbjct 1164 TTCTCCATTCTTGGTAAATTTGGGGCCATCTTTGCTTCGATTCCCGCTCCAATCGTCGCA 1223
Query 1381 GCTCTTTAC-T-GTTTGTTCTTCT-CATACGTTGGTGCTGGTGGTCTAAGTCTAA-TCCA 1436
|| || || | | |||||||| | ||||||||||||||||||||||||| || | | ||
Sbjct 1224 GCA-TT-ACATTGCTTGTTCTT-TGCATACGTTGGTGCTGGTGGTCTAAG-CTTACTTCA 1279
Query 1437 GTTCTGCAATCTGAACAGTTTCAGAACTAAGTTCATTCTTGGATTCTCCATCTTCATGGG 1496
|||||| ||||| ||||| |||||||| || ||||| || |||||||| ||||||||||
Sbjct 1280 GTTCTGTAATCTAAACAGCTTCAGAACAAAATTCATCCTCGGATTCTCGGTCTTCATGGG 1339
Query 1497 CTTATCCATACCTCAATACTTTTACCAGTACACAACT-TTGGA-AACCTATGGACCCGTT 1554
|||||| ||||| || ||||| || |||| ||| || || | || |||||||| |||
Sbjct 1340 CTTATCGATACCACAGTACTTCAACGAGTATACAGCTGTTA-ACAAG-TATGGACCAGTT 1397
Query 1555 CGGACATC-CGCAACATGGTTCAACAACATTATAAACGTTCCTTTCTCATCTAAAGCATT 1613
| ||| | ||||| ||||||||| | || || || || || ||||| |||||||||||
Sbjct 1398 CACACA-CACGCAAGATGGTTCAATGATATGATCAATGTACCATTCTCCTCTAAAGCATT 1456
Query 1614 TGTTTCCGGGATTTTGGCCTTCTTTCTAGACACGACATTGCC-TCCAAAGGACAA-GACG 1671
||| | ||||||||||| |||||||| || |||||| | || |||| ||| | |
Sbjct 1457 TGTGGCTGGGATTTTGGCATTCTTTCTTGATGTAACATTGTCATCTAAAG-ACAGTGCC- 1514
Query 1672 ACAAAGAAAGATCGAGG-ACTAGTTT-GGTGGAAGCGATTTAAATCGTTCCAATCTGATA 1729
|||| |||||| ||||| | | |||| ||||| | || |||| || || |||| ||||
Sbjct 1515 ACAAGGAAAGACCGAGGGA-T-GTTTTGGTGGGATCGTTTTATGTCTTTTAAATCGGATA 1572
Query 1730 AC-AGAAGCGAAGAGTTCTACTCTTTGCCTCTCAATCTCAGCAAGTACTTTCCTTCT 1785
| ||||| |||||||| |||||||||||| ||||||||| |||||| ||||| |||
Sbjct 1573 -CTAGAAGTGAAGAGTTTTACTCTTTGCCTTTCAATCTCAACAAGTATTTTCCCTCT 1628
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73323721625
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5