BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G10550.1
Length=1068
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471170 jgi|Araly1|471170|fgenesh2_kg.1__1124__AT1G10550.1 1616 0.0
> Ahg471170 jgi|Araly1|471170|fgenesh2_kg.1__1124__AT1G10550.1
Length=1031
Score = 1616 bits (875), Expect = 0.0
Identities = 958/998 (96%), Gaps = 5/998 (1%)
Strand=Plus/Plus
Query 5 TCAGTAATCAGAAGTATAAAACACAACATGAAGATTATGTGGGAAACAGCAGTTGTGTTT 64
|||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1 TCAGTAATCAAAAGTATCAAACACAAAATGAAGATTATGTGGGAAACAGCAGTTGTGTTT 60
Query 65 TGTCTCTGTTCGTTGTCTTTGGTTTCTTCACACAGCAGGAAATTCACAACACCAAACGTG 124
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TGTCTTTGTTCATTGTCTTTGGTTTCTTCACACAGCAGGAAATTCACAACACCAAACGTG 120
Query 125 ACACGCCTCACAGATCAATTCAGTAAGATCGCCATTGAAAATGGCTTC-TCCAGACGTTT 183
|||||||||||||||||||||| ||||||| ||||||||||||||||| | |||||||||
Sbjct 121 ACACGCCTCACAGATCAATTCACTAAGATCACCATTGAAAATGGCTTCGT-CAGACGTTT 179
Query 184 CGGAGCTCACAATATTCAGGTCAATGGCTCCCTCGCTAAGCTCACTCTCGACAAATCCTC 243
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 180 CGGAGCTCATAATATTCAGGTCAATGGCTCCCTCGCAAAGCTCACTCTCGACAAATCCTC 239
Query 244 CGGAGCTGGGTTGGTGTCAAAGAACAAGTATCACTATGGTTTCTTCAGTGCAAGACTCAA 303
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 240 TGGAGCTGGGTTGGTGTCAAAGAACAAGTATCAGTATGGTTTCTTCAGTGCAAGACTCAA 299
Query 304 GCTTCCCGCTGGATTTGCCTCTGGTGTTGTGGTTGCTTTCTATTTATCAAACGCAGAGAC 363
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GCTTCCTGCTGGATTTGCCTCTGGTGTTGTGGTTGCTTTCTATTTATCAAACGCAGAGAG 359
Query 364 TTATCCGAAAAGCCACGACGAGATAGACATAGAATTGTTGGGTAGAAGTAGGAGAGATGA 423
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TTATCCAAAAAACCACGACGAGATAGACATAGAATTGTTGGGTAGAAGTAGGAGAGATGA 419
Query 424 TTGGACGATCCAGACGAATGTATATGCAAATGGAAGTACTAGAACGGGAAGAGAAGAGAA 483
|||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 420 TTGGACGATCCAAACGAATGTGTATGCAAATGGAAGTACGAGAACGGGAAGAGAAGAGAA 479
Query 484 GTTTTATTTTTGGTTCGATCCAACGCAAGCCTTTCACGACTATACCCTCATTTGGAACTC 543
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GTTCTATTTTTGGTTTGATCCAACGCAAGCCTTTCACGACTATACCCTCATTTGGAACTC 539
Query 544 CCACCATACTGTATTTTTGGTAGACAACATTCCGGTTAGGCAGTTTCCAAACCGGGGAGC 603
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 540 CCACCATACTGTATTTTTGGTAGACAACATTCCGGTTAGGCAGTTTCCGAACCGGGGAGC 599
Query 604 CTTCACAAGCGCGTACCCGTCTAAACCGATGTCTCTATACGTCACCGTTTGGGACGGTTC 663
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 CTTCACAAGCGCGTATCCGTCTAAACCGATGTCTCTATACGTCACCGTTTGGGACGGTTC 659
Query 664 AGAGTGGGCCACTAAAGGTGGTAAGTACCCCGTCAACTACAAGTACGCCCCTTTCGTGGT 723
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 AGAGTGGGCCACTAAAGGTGGTAAGTACCCCGTCAACTACAAGTACGCCCCTTTCGTGGC 719
Query 724 TTCCGTTGCTGACGTGGAGTTAAGTGGCTGTTCCGTTAACAACGGCTCCTCTACCGGGTC 783
||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 720 CTCCGTTGCTGACGTGGAGTTAAGTGGCTGCTCCGTTAACAACGGCTCCTCTACCAGGTC 779
Query 784 CGGGCCATGTACCAAGTCGGGCGGGTCGATTTCGAGTCTGGACCCTGTTGATGGTCAGGA 843
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 CGGGCCATGTACCAAGTCGGGCGGGTCGATTTCGAGTCTGGACCCTGTTGATGGTCAGGA 839
Query 844 TTTTGCCACGTTGTCGAAGAATCAGATCAATGCCATGGATTGGGCTAGGAGAAAGCTGAT 903
|||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||
Sbjct 840 TTTTGCCACGTTGTCGAAAAATCAGATCAATGCCATGGATTGGGCTCGGAGAAAGCTAAT 899
Query 904 GTTCTATTCTTATTGCAGTGATAAGCCAAGATACAAAGTCATGCCTGCTGAGTGCAACTG 963
||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 900 GTTCTATTCTTATTGTAGTGATAAGTCGAGATACAAAGTCATGCCTGCTGAGTGCAACTG 959
Query 964 AtttttttttttGTTAAAACACACA---TTGTTACTTT 998
|||||| ||| ||||||||||||| ||||||||||
Sbjct 960 ATTTTTAATTTAGTTAAAACACACAACATTGTTACTTT 997
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39762202431
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5