BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G10560.1
Length=2386
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471171 jgi|Araly1|471171|fgenesh2_kg.1__1125__AT1G10560.1 3448 0.0
> Ahg471171 jgi|Araly1|471171|fgenesh2_kg.1__1125__AT1G10560.1
Length=2383
Score = 3448 bits (1867), Expect = 0.0
Identities = 2221/2392 (93%), Gaps = 24/2392 (1%)
Strand=Plus/Plus
Query 1 AAAACAAACTTTAATCTACAAAGTCATAGCAGCATGATCCATACGAAAACCGGGTCTGGT 60
|||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 1 AAAACAAACTTTGATCTA-TAAGTCTTAGCAGCATGATCCATACGAAAACCGGGTCTGGT 59
Query 61 CGTCGGATCTTGACATTTCCGACTGTGGAACCATCCGAATCAATCTCCATAGTCACCCTA 120
|||||||||||||| |||||| ||||| |||||| |||||||||||||||||||||| ||
Sbjct 60 CGTCGGATCTTGACCTTTCCGGCTGTGCAACCATGCGAATCAATCTCCATAGTCACCTTA 119
Query 121 TTGGACTCACTGATTCAACTCGCCGGCGACATTCTCACATTCAAGTCGAAACACTTCTCT 180
|||||||||| |||||||| |||||||||||||||||||| ||||| |||||||||||
Sbjct 120 CTGGACTCACTTATTCAACTAGCCGGCGACATTCTCACATTTAAGTCTAAACACTTCTCC 179
Query 181 ACCAATAAACAAAGCTTCAGAGAAACTCTCAGGCGGATCCAAAACCTACTTGTTGTCTTC 240
||||||||||||||||||||||| ||||| |||||||||| ||||||| || ||||||||
Sbjct 180 ACCAATAAACAAAGCTTCAGAGATACTCTTAGGCGGATCCGAAACCTAGTTCTTGTCTTC 239
Query 241 GAAGAGATTCGGATCCGGATCAGAAA-TTCGAGACGCTACTTCCATGACTCTGCCGCCGC 299
|||||||| ||||||||| || |||| ||| |||||||| ||||| ||||||||||||
Sbjct 240 GAAGAGATCCGGATCCGGGTCGGAAATTTC-AGACGCTATTTCCACAACTCTGCCGCCGT 298
Query 300 GTCGAGCCTCAAGGAGATCCACGTCGGCTTCCAAAAGCTCAAGTTCCTTCTAGAAGACTG 359
||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||
Sbjct 299 GTCGAGCCTCAAGGAGATCCACGTCAGCTTCCAAAAGCTCAAGTTCCTTTTTGAAGACTG 358
Query 360 CACGAGAGACGGAGCTAGACTATGCATGATGATGAACTCGGATCAAGTCTCGGATCATCT 419
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 CACAAGAGACGGAGCTAGACTATGCATGATGATGAACTCGGATCAAGTCTCGGATCATCT 418
Query 420 CCGGGTCCTGACTCGATCCATTTCCACCAGTCTTAGTGCGTTTCCTGTCGCCTCCGTTGA 479
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 419 CCGGGTCCTGACTCGATCCATTTCCACCAGCCTTAGTGCGTTTCCTGTCGCCTCCGTTGA 478
Query 480 CTTAACGACCGAAGTCAACGAGCTAATTGATTTAGTGGTGCGGCAAGCTCGTAAGTACGG 539
|||| ||| ||||||||||||||| ||||| ||||||||||||||||| |||||||||||
Sbjct 479 CTTACCGAGCGAAGTCAACGAGCTTATTGACTTAGTGGTGCGGCAAGCCCGTAAGTACGG 538
Query 540 AGTCCAACCTGAAACAAATGATAAACGGGCCGTGAGCTCCATTAATAGGATCCTTGCTCT 599
|||||||| |||||||||||||||||||||| ||||||| ||||| |||||||||||||
Sbjct 539 AGTCCAACATGAAACAAATGATAAACGGGCCATGAGCTCTGTTAATCGGATCCTTGCTCT 598
Query 600 GTTTGTGAACAGAGTCGTCCCGGATCCGGATGAAATTAACAGGATCTTGGATCACGTAGG 659
||||| ||||| ||||||||||||||| ||||| || ||| ||||| |||||||||||||
Sbjct 599 GTTTGCGAACAAAGTCGTCCCGGATCCAGATGAGATAAACCGGATCCTGGATCACGTAGG 658
Query 660 GATCAGAAAATGGGGAGATTGCGTTAAAGAGATAAACTTTCTCGgagaagagatagatgc 719
||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |||
Sbjct 659 GATCAGAAAATGGGGAGATTGCGTTAAAGAGATCAACTTTATCGGAGAAGAGATAGCTGC 718
Query 720 agaacggttagatgagaagaagaagaagagTAGCGATCAAGTCGAGCTTCTCAGTAGTTT 779
||| |||||||||||||||||||||||||| | || ||||||||||||||||||||| ||
Sbjct 719 AGAGCGGTTAGATGAGAAGAAGAAGAAGAGCAACGTTCAAGTCGAGCTTCTCAGTAGCTT 778
Query 780 AATGGGATTCATATGTTATTGCAGATGCATTATACTTGGACGGATCGAGAGAGATGATCA 839
||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||| |
Sbjct 779 AATGGGATTCATATGCTATTGCAGATGCGTTATACTTCGACGGATCGAGAGAGATGATGA 838
Query 840 TCATAATCATCATGAA-GATGGTATAAAGAAAGATCATGACTTGATCCGAGGATTGAAAG 898
| || ||||| | || |||||||| | ||||||||| |||||||| ||||| |||||||
Sbjct 839 TGATCATCATAAC-AACGATGGTATCATGAAAGATCAAGACTTGATTCGAGGGTTGAAAG 897
Query 899 TTGAGGATCTCCTTTGTCCAATTTCACTAGAGATTATGACGGATCCTGTGGTTATAGAAA 958
||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 898 TTGAGGATCTCCTTTGTCCAATTTCTCTAGAGATTATGGCGGATCCTGTGGTTATAGAAA 957
Query 959 CAGGCCACACTTATGATCGGAGCTCCATCACTAAATGGTTCGGATCCGGGAACATCACGT 1018
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 958 CAGGGCACACTTATGATCGGAGCTCCATCACTAAATGGTTTGGATCCGGGAACATTACGT 1017
Query 1019 GCCCTATAACCGGAAAGATTCTGACTAGTACCGAGTTGGTTGATAACGTATCCGTGAGGC 1078
|||||| |||||| ||||||||| | ||||| ||||||||||||||||||||||||||||
Sbjct 1018 GCCCTAAAACCGGGAAGATTCTGGCGAGTACTGAGTTGGTTGATAACGTATCCGTGAGGC 1077
Query 1079 AAGTGATTCGAAAGCACTGCAAAACAAACGGCATCGTTTTGGCGGGGATTAGTCGGAGAA 1138
|||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||
Sbjct 1078 AAGTGATTCGAAAGCATTGCAAAACAAACGGCATCACTTTGGCGGGGATTAGCCGGAGAA 1137
Query 1139 GAAAGAGTCACGATGACGTGGTC-CCGGAGAGTTTGGCTGCAAAGGGAGCTGGGAAACTC 1197
| | || ||| |||||||||| | ||||||||||||||| ||||||||||||||||||||
Sbjct 1138 GGAGGACTCAAGATGACGTGG-CGCCGGAGAGTTTGGCTTCAAAGGGAGCTGGGAAACTC 1196
Query 1198 ATCGCAAAGTTTCTCACTTCAGAGTTAATCAATGGCGGTGAAGAGATGATTTACAGAGCC 1257
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1197 ATCGCAAAGTTTCTCACTTCAGAGTTAATCAATGGCAGTGAAGAGATGATTTACAGAGCC 1256
Query 1258 GTGAGAGAGATTCGTGTTCAGACCAAGACAAGCAGTTTTAATAGGTCTTGTCTGGTTAAA 1317
||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1257 GTGAGGGAAATTCGTGTTCAGACCAAGACAAGTAGTTTTAATAGGTCTTGTCTGGTTAAA 1316
Query 1318 GCTGGTGCTGTGACTCCACTTTTAAAGCTTCTTAGCTCCGTAGATATC-AGGATTCAAGA 1376
||||||||||| ||||| |||||||||||||||||||||| |||| || || ||||||||
Sbjct 1317 GCTGGTGCTGTAACTCCCCTTTTAAAGCTTCTTAGCTCCGGAGAT-TCCAGAATTCAAGA 1375
Query 1377 AAACGCAATGGCTGGGATCTTGAATCTTTCCAAGCACGTTACCGGAAAATCTAAGATTGC 1436
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1376 AAACGCAATGGCTGGGATCTTGAATCTTTCCAAGCACGTTACCGGAAAATCCAAGATTGC 1435
Query 1437 GGGAGAAGGGTTAAAGAT-ACTTGTAGAGATTCTCAACGAAGGAGCTAAAACAGAGACGA 1495
||||||||||| ||||| | ||||||||||||| |||||||||||||||||||||||||
Sbjct 1436 CGGAGAAGGGTTGAAGATCA-TTGTAGAGATTCTTAACGAAGGAGCTAAAACAGAGACGA 1494
Query 1496 GACTATACTCTGCTTCTGCTCTGTTTTATCTCTCTTCCGTTGAAGATTACAGCAGATTGA 1555
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 1495 GACTATACTCTGCTTCTTCTCTGTTTTATCTCTCTTCCGTTGAAGATTACAGCAGATTAA 1554
Query 1556 TCGGAGAAAATCCAGATGCGATTCCGGGATTGATGAATATCGTTAAAGGAGATGATTACG 1615
||||||| |||||||| |||||| |||||||||||||||||||||||||||| |||||||
Sbjct 1555 TCGGAGAGAATCCAGACGCGATTTCGGGATTGATGAATATCGTTAAAGGAGAAGATTACG 1614
Query 1616 GCGATTCCGCCAAACGTAGCGCGTTGCTTGCGGTTATGGGTTTGTTAATGCAATCCGATA 1675
|||||||||| ||||||| || |||||||||||| |||||||||||||||||||||||||
Sbjct 1615 GCGATTCCGCAAAACGTAACGGGTTGCTTGCGGTAATGGGTTTGTTAATGCAATCCGATA 1674
Query 1676 ACCATTGGCGTGTTCTCGCCGCCGGAGCTGTTCCGATTCTTCTTGATCTGTTGAGATCGG 1735
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1675 ATCATTGGCGTGTTCTCGCCGCCGGAGCTGTTCCGATTCTTCTTGATCTGTTGAGATCGG 1734
Query 1736 GGGAGATTAGCGGCGGACTCACGGCGGATTGTTTAGCGACGTTGGCGAAGCTGGCGGAGT 1795
|| |||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1735 AAGAAATTAGCGGCGAACTCACGGCGGATTGTTTAGCGACGTTGGCGAAGCTTGCGGAGT 1794
Query 1796 ATCCTGATGGGACGATTGGGGTGATTCGTCGTGGCGGTTTGAAACTCGCGGTGAAGATTT 1855
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1795 ATCCTGATGGGACGATTGGGGTGATTCGTCGTGGCGGTTTGAAACTCGCGGTAAAGATTT 1854
Query 1856 TGTCTTCGTCGGAGGATTCTCCGGTGGCGGTGAAGCAGCATTGTGTTGGTCTGATTTTGA 1915
||||||||||||| |||||||||| |||||||||| |||||||||||| ||||||| |||
Sbjct 1855 TGTCTTCGTCGGAAGATTCTCCGGCGGCGGTGAAGAAGCATTGTGTTGCTCTGATTCTGA 1914
Query 1916 ACTTGTGTCTTAACGGAGGACGTGACGTCGTTGGGGTTCTGGTGAAGAATTCGTTGGTCA 1975
|||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||| |
Sbjct 1915 ACTTGTGTCTTAACGGAGGACGTGACGTTGTTGGGGTTCTGGTAAAGAACACGTTGGTAA 1974
Query 1976 TGGGGTCGCTTTACACGGTGTTAAGTAACGGCGAATATGGAGGAAGCAAGAAGGCTAGTG 2035
|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 1975 TGGGGTCGCTTTACACGGTGTTAAGTAACGGCGAATGTGGAGGAAGCAAGAAAGCTAGTG 2034
Query 2036 CGCTGATCAGAATGATCCATGAGTTCCAGGAGAGGAAAACCGGTTCGGTTGAACCGAATC 2095
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2035 CGCTTATTAGAATGATCCATGAGTTCCAGGAGAGGAAAACCGGTTCGGTTGAACCGAATC 2094
Query 2096 TTCAAAGAGGACGGTTCGTTCACGCCTGGTGATTTTGGTACACAGTAACTCTTGAGTATT 2155
||||||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||
Sbjct 2095 TTCAAAGAGGACGGTTCGTCCACGCCTGGTGATTTCGGTACAAAGTAACTCTTGAGTATT 2154
Query 2156 TTAAAGAGTT-ATT-T--ACCATAAAGAAAACTAAATAATTTTGGTTAAGGGTGAAATTC 2211
|||||||||| ||| | |||| |||| ||| ||||||||||||||||||||||||||||
Sbjct 2155 TTAAAGAGTTGATTATTTACCAAAAAGGAAATTAAATAATTTTGGTTAAGGGTGAAATTC 2214
Query 2212 TTTTATTAATTT-TTATGTAAAGGGTTTAGTGTTTGTATATTTAGCTCGGGTTTT-ATTT 2269
|||||||| ||| ||| ||||| ||||||||||||||||||| |||||||||||| ||||
Sbjct 2215 TTTTATTA-TTTCTTACGTAAATGGTTTAGTGTTTGTATATT-AGCTCGGGTTTTTATTT 2272
Query 2270 TCATAAACCAAAGAGCTAC-TGGGATGGCAATAAGCTTCAGtttttttAAGAAG---CTG 2325
| |||||| |||||||||| |||||||||| |||||||||| ||||| |||||| |||
Sbjct 2273 TAATAAACAAAAGAGCTACCTGGGATGGCA-TAAGCTTCAGATTTTTAAAGAAGAAGCTG 2331
Query 2326 TGTCCATATTCCATAATGTAATTATAACTGAATCAATAAAAACTATTACAAT 2377
|||||||| |||| ||||||||||||| || |||||||||||||||||||||
Sbjct 2332 TGTCCATAGTCCACAATGTAATTATAAATGGATCAATAAAAACTATTACAAT 2383
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89892978200
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5