BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G10570.1
Length=1936
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471173 jgi|Araly1|471173|fgenesh2_kg.1__1127__AT1G10570.1 2684 0.0
Ahg475298 jgi|Araly1|475298|fgenesh2_kg.2__428__AT1G60220.1 647 0.0
> Ahg471173 jgi|Araly1|471173|fgenesh2_kg.1__1127__AT1G10570.1
Length=1865
Score = 2684 bits (1453), Expect = 0.0
Identities = 1754/1893 (93%), Gaps = 45/1893 (2%)
Strand=Plus/Plus
Query 46 ATGAAGAGACAAAGAGCAATCGAGTTAGATCGAGTGAAGAAG---ACAATGTTGAACATA 102
|||||||||||||||| ||||||| ||||||| ||| ||||| |||| ||| ||||||
Sbjct 1 ATGAAGAGACAAAGAGTAATCGAGGTAGATCGTGTGGAGAAGACAACAAAGTTCAACATA 60
Query 103 GATTGGGACGATGCTTTGGGCGATGAGGAAGTTCCCGAGCTCGAGATCATCGCTACTGAC 162
|||||||||||||||||||| || || |||||||||||||||||||||||||| ||||||
Sbjct 61 GATTGGGACGATGCTTTGGGTGAAGAAGAAGTTCCCGAGCTCGAGATCATCGCAACTGAC 120
Query 163 AAAATTCCGCCGCGTGAACCTACTCTTTCCGGCTATGAACCCGCCGTCT-CTGTGCGATC 221
|||||||| |||||||| ||||||||||||||| ||||||||||||||| | ||||||||
Sbjct 121 AAAATTCCCCCGCGTGAGCCTACTCTTTCCGGCGATGAACCCGCCGTCTGC-GTGCGATC 179
Query 222 CCTCAGGGATAACGAACTCGACGATCATCTGAAGCGTCAGAGATCACTTCTTACTCGTCT 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CCTCAGGGATAACGAACTCGACGATCATCTGAAGCGTCAGAGATCACTTCTTACTCGTCT 239
Query 282 CGGTGATAAGTTGGCAGACAAGGGCGAGAAAATCCGAAACAGAATCGGAGAGCTCGAGTA 341
||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 240 CGGTGATAAGTTGCCAGATAAGGGCGAGAAAATCCGAAACAGAATCGGAGACCTCGAGTA 299
Query 342 CGAGAAGCAGCGAAGGATGTTCCAACAACGGACCAAAATGCAGGATGCAGACAACGGATG 401
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 300 CGAGAAGCAGCGAAGGATGTTCCAACAACGGACCAAAATGCAGGAAGCGGACAACGGATG 359
Query 402 TCAGATTCTCGAGAAACCAAAAAGCTCAGATGTGTTTATGCGAGCGAGTACAGCCTCAAA 461
||||||||| ||| |||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 360 TCAGATTCTTGAGCAACCTAAAAGCTCAGATGTGTTTATGCAAGCGAGTACAGCCTCAAA 419
Query 462 AGACACCTCTGGACAAGGGACTTCGGGATCGAAAGACGTGTCTCGGTCAACATTTGCTGC 521
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 420 AGACACCTCTGGACAAGGGAATACGGGATCGAAAGACGTGTCTCGGTCAACATTTGCTGC 479
Query 522 TCATTTTAGTGACAAT-CTCAAAATGGGACCTCAACCAGTGAAACTAG-TTAATGACAAA 579
|||||||||||||||| || |||| |||| ||||| |||| ||||| | |||| ||||||
Sbjct 480 TCATTTTAGTGACAATCCT-AAAACGGGAGCTCAATCAGTAAAACT-GTTTAACGACAAA 537
Query 580 CTACAAGATTTGGGACGTGGAAGCTGGATAAGCAAAGCTAATAGAGACTCAATAATAGAG 639
||||||||||||||||| |||||||||| ||||||| | |||||||||||||||||||||
Sbjct 538 CTACAAGATTTGGGACGCGGAAGCTGGAAAAGCAAATCAAATAGAGACTCAATAATAGAG 597
Query 640 AAAAATAATGTGTGGCGGTCGCTGCCAAGATTAAGCAAGTGTAAGGTCAGTTTAAAGAAC 699
|||| ||||| ||||||||||||||||| ||| |||||||||||||||||| |||||||
Sbjct 598 AAAAGTAATGGGTGGCGGTCGCTGCCAAAATTGAGCAAGTGTAAGGTCAGTGAAAAGAAC 657
Query 700 TTTTATTCTGAGTCTAAGGATCCTAAAGGGGATCGAAGACCCAATGAAGCTTATGGTAAG 759
||||||||||| ||||||||||| ||||||| ||||| ||||||||||||||||||||||
Sbjct 658 TTTTATTCTGAATCTAAGGATCCAAAAGGGGTTCGAAAACCCAATGAAGCTTATGGTAAG 717
Query 760 GGAAAGCCAAATGAATCTTCCCCTTATTTACTTGTCGACGATGATGATGGCGATGACGAC 819
||||||||||| |||||||||||||| |||||||| |||||||||| ||| ||| ||
Sbjct 718 GGAAAGCCAAAGGAATCTTCCCCTTACTTACTTGT---TGATGATGATGACGACGACAAC 774
Query 820 AAAGTCATTGGTTATGAAACTCCCAGGCATTGGAGTTTAAAAGCATCGCCACT-ACAGAG 878
|||||| | ||||||||||||||| | ||||||| ||||| |||||| | ||||||
Sbjct 775 CCCGTCATTAGCTATGAAACTCCCAGGGAGTGGAGTTCGAAAGCGTCGCCA-TCACAGAG 833
Query 879 TTCAAGCTGCAGGAAGAAATCAGATGATAAAGTGATTAATTTGGATGAAGATGAACCTCT 938
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 834 TTCAAGCTGCAGGAAGAAATCAGATGATAAAGTGATTAATTTGGACGAAGATGAACCTCA 893
Query 939 GTCTCCAATGGTAGTAGAGGAAGCATGTGAACTTCCTGAAGGGTTACCAGAAGATATTTA 998
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 894 GTCTCCAATGGTAGTAGAGGAAGCATGTGAACTTCCTGAAGGGTTACCTGAAGATATTTA 953
Query 999 CTACCCATCAAGTGATCAAAGTGATGGGCGAGACCTTGTTCAAGTATCTCTTAAAGATCT 1058
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 954 CTACCCATCAAGTGATCAAAGTGATGGGCGAGACCTTGTTCAAGTATCTCTTAAAGATTT 1013
Query 1059 GAAATGCCTTTCACCTGGGGAATATCTTACATCGCCAGTTATAAATTTCTACATCAGGTA 1118
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 GAAATGCCTTTCACCTGGGGAATATCTTACATCGCCAGTTATAAATTTCTACATCAGGTT 1073
Query 1119 CGTGCAACATCACGTGTTTTCAGCTGATAAGACTGCTGCTAATTGTCATTTCTTCAATAC 1178
| |||||||||||||||||||||| ||| |||| ||||| ||||||||||||||||||||
Sbjct 1074 CTTGCAACATCACGTGTTTTCAGCGGATGAGACAGCTGCGAATTGTCATTTCTTCAATAC 1133
Query 1179 GTTTTTCTACAAGAAGCTCACAGAAGCTGTTTCATACAAGGGTAATGACAGGGATGCATA 1238
|||||||||||||||||||| |||||||||||| ||||||||||| |||| |||||||||
Sbjct 1134 GTTTTTCTACAAGAAGCTCATAGAAGCTGTTTCGTACAAGGGTAACGACAAGGATGCATA 1193
Query 1239 TTTTGTGAAGTTCAGGCGGTGGTGGAAGGGTTTTGATCTATTCTGTAAATCATATATATT 1298
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1194 TTTTGTGAAGTTCAGGCGGTGGTGGAAGGGTTTTGATCTTTTCTGTAAATCATATATATT 1253
Query 1299 TATACCAATACATGAAGATCTTCACTGGAGCTTAGTCATAATTTGCATCCCAGACAAGGA 1358
|||||| |||||||||||||| |||||||||||| | |||||||||||||||||| ||||
Sbjct 1254 TATACCGATACATGAAGATCTCCACTGGAGCTTAATAATAATTTGCATCCCAGACGAGGA 1313
Query 1359 GGACGAATCGGGATTGACTATAATTCACTTGGATTCATTGGGACTTCACCCAAGAAATTT 1418
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1314 GGACGAATCGGGATTGACTATAATTCACTTGGATTCATTGGGACTTCACCCAAGAAGTTT 1373
Query 1419 GATTTTCAATAATGTCAAAAGATTTCTGAGAGAGGAATGGAACTATCTAAATCAAGATGC 1478
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1374 GATTTTTAATAATGTCAAAAGATTTCTGAGAGAGGAATGGAACTATCTAAATCAAGATGC 1433
Query 1479 TCCATTGGATTTACCAATTTCAGCAAAAGTATGGAGAGACCTTCCCAATATGATCAACGA 1538
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1434 TCCATTGGATTTACCAATTTCAGCAAAAGTATGGAAAGACCTTCCCAATATGATCAACGA 1493
Query 1539 AGCTGAAGTGCAGGTTCCACAACAGAAGAACGATTTCGACTGTGGTCTGTTTCTGCTCTT 1598
||||||||| | |||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 1494 AGCTGAAGT-----T-CCACAACAGAAGAATGATTTCGACTGTGGTCTGTTTGTGCTCTT 1547
Query 1599 CTTCATAAGACGTTTCATCGAAGAGGCTCCTCAAAGGCTGACATTGCAGGATTTGAAAAT 1658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1548 CTTCATAAGACGTTTCATCGAAGAGGCTCCTCAAAGGCTGACATTGCAGGATTTGAAAAT 1607
Query 1659 GATTCACAAGAAGTGGTTTAAACCGGAAGAAGCTTCCGCTTTGAGGATCAAAATCTGGAA 1718
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1608 GATTCACAAGAAGTGGTTTAAACCCGAAGAAGCTTCCGCTTTGAGGATCAAAATCTGGAA 1667
Query 1719 CATACTCGTTGATCTATTCCGCAAGGGTAACCAAACAGATTAAAGCTGTATAGAACAGTG 1778
| |||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 1668 CTTACTCGTTGATCTATTCCGCAAGGGTAACCAA---G-------CTGTATAGAACAGTG 1717
Query 1779 TCAAGTTTGGTCACTCTAATTAAGGAATGAAATGAAAGATACGTTTTT-GTTAACA-ATC 1836
|| |||||||| |||||||||||| ||||||| || || | |||||| |||||| |||
Sbjct 1718 TCGAGTTTGGTAACTCTAATTAAGAAATGAAA-GA--GA-A-GTTTTTTGTTAACCGATC 1772
Query 1837 ATTTTGTTCAAGTCCTGTAATA-AACTAAGGAGCATGACATAATCA---G--A-A-CAAA 1888
|||||||||||||||||||||| ||||||||||||||||||||||| | | | ||||
Sbjct 1773 ATTTTGTTCAAGTCCTGTAATATAACTAAGGAGCATGACATAATCATAAGTCAGAACAAA 1832
Query 1889 TCAACAAGGTAATAATAACGTATCCGAATAAAA 1921
||||||| ||||||||| |||||||||||||
Sbjct 1833 TCAACAAACCAATAATAACTTATCCGAATAAAA 1865
> Ahg475298 jgi|Araly1|475298|fgenesh2_kg.2__428__AT1G60220.1
Length=2023
Score = 647 bits (350), Expect = 0.0
Identities = 1020/1331 (77%), Gaps = 95/1331 (7%)
Strand=Plus/Plus
Query 452 CAGCCTCAAAAGACACCTCTGGACAAGGGACTTCGGGA-TCGAAAGACGTGTCTCGGTCA 510
||||||| |||||||||||| ||||||||| | | || || ||||| || || ||||||
Sbjct 482 CAGCCTCGAAAGACACCTCTAGACAAGGGAATAC-AGACTCAAAAGAAGTCTCACGGTCA 540
Query 511 ACATTTGCTGCTCATTTT-AGTGACAATCTCAAAATGGGA-CCTCAACCAGTGAAA-CTA 567
|||||| |||| | |||| ||| | || | ||||| || |||| || |||| | |
Sbjct 541 ACATTTTCTGC-CTTTTTCAGT-A-AA-C-CAAAAACAGATACTCAGTCAAAGAAAGC-A 594
Query 568 GTTAATGACA-AACTACAAGATTTGGGACGTGGAAGCTGGATAAGCA-AA-GCTAATAGA 624
|| | | | ||||| ||||||||||| ||| ||| | | || || || ||| |||||
Sbjct 595 TTTGGT-AAAGAACTAGAAGATTTGGGATGTGAAAG-T-AAGAAACACAAGGCTGATAGA 651
Query 625 GA-CTCAATAA-TAGAGAAAAATAATGTGTGGCGGTCGCTGCCAAGAT-TAAGCAAGTG- 680
| | | ||| || | | | | |||||||| | || | |||| || | || |
Sbjct 652 AAGC-CCGTAACAAG-GCTGAGCAGCGGGTGGCGGTTGTTGTC-AGATATAGGGAA-CGC 707
Query 681 TAAGGTCAGTTTAAAGAACTTTTATTCT-GAGTCT-AAGGATCCTAAA-GGGGATC-GAA 736
| || |||| |||| | ||| ||||| || | | |||| | | ||| ||| ||| |||
Sbjct 708 TGAGCACAGTGAAAAGCAGTTTGATTCTGGA-TTTAAAGGGT-C-AAATGGGAATCAGAA 764
Query 737 GACCCAATGAAGCTTATGGTAAGGGAAAGC-CAAATGAATCTTCCCCT-TATTTACT-TG 793
| |||| ||| ||||||| ||| ||||| | || ||| ||| | | || || || ||
Sbjct 765 -ATCCAAGGAATCTTATGGAAAGAAAAAGCGC-AAGGAAACTT-CGATCTA-TT-CTCTG 819
Query 794 -TCGACGATGATGATGGCGATGACGACAAAGTCATTGGTTATGAAACTCCCAGGCATTGG 852
| || |||||||||| |||||| || | ||||||| |||||||||| ||| | |||
Sbjct 820 CTTGATGATGATGATGATGATGACAACGACCCCATTGGTCATGAAACTCCTAGGGAGTGG 879
Query 853 -AGTTTAAAAGCATCGCCACTACAG--AGTTC-AAGCTGCAGGAAGAAATCAGATGATAA 908
| | ||| ||| ||| | ||| ||||| |||| || | ||||||||||| ||||
Sbjct 880 TCG-TGGCAAGAATCTCCA-T-CAGAAAGTTCAAAGC-GCCGTAAGAAATCAGAGGATAC 935
Query 909 AGTGATTAATTTGGATGAAGATGAACCTCTGTCTCCAATGGTAGTAGAGGAAGCATG-TG 967
|||||| ||| |||||||||| ||||||| | || ||| || | ||| |||| | ||
Sbjct 936 AGTGATAAATGTGGATGAAGAAGAACCTCAGCCTTCAACAGTGGCGGAGCAAGC-GGTTG 994
Query 968 AACTTCCTGAAGGGTTACCA-GAAGATATTTACTACCCATCAAGTGATCAAAGTGATGGG 1026
|||| |||||||| ||| || |||||||| | |||||||||||| | | ||||
Sbjct 995 AACTGCCTGAAGGCTTA-CAGGAAGATATATGCTACCCATCAAG-G----GA-TGAT--- 1044
Query 1027 CGAGACCTTGTTCAAGTATCTCTTAAAGATC-TGAAATGCCTTTCACCTGGGGAATATCT 1085
| || |||||||||| | ||||||||||| || |||||||| | ||| | |||| |||
Sbjct 1045 CCTCACTTTGTTCAAGTTTGTCTTAAAGATCTTG-AATGCCTTGCGCCTCGAGAATTTCT 1103
Query 1086 TACATCGCCAGTTATAAATTTCTACATCAGGTACGTGCAACATCACG-TGTTTTCAGCTG 1144
||||| || ||||| |||||||||||||||| | |||| || || | | | ||| | |
Sbjct 1104 AACATCACCGGTTATGAATTTCTACATCAGGTTCTTGCAGCAGCA-GATATCATCATC-G 1161
Query 1145 -AT-AAGA-CTGCTGCTAATTGTCATTTCTTCAATACGTTTTTCTACAAGAAGCTCACAG 1201
|| || | || ||||| ||||||||||||||||||| | ||||||||||||||||| |
Sbjct 1162 AATCAA-ATCT-CTGCTGATTGTCATTTCTTCAATACATATTTCTACAAGAAGCTCAGTG 1219
Query 1202 AAGCTGTTTCATACAAGGGTAATGACAGGGATGCATATTTTGTGAAGTTCAGGCGGTGGT 1261
| |||||| | |||||||| ||||||| |||||| | |||||||||||||||||||||||
Sbjct 1220 ACGCTGTTACGTACAAGGGGAATGACAAGGATGCCTTTTTTGTGAAGTTCAGGCGGTGGT 1279
Query 1262 GGAAGGGTTTTGATCTATT-CTGTAAATCATATATATTT-ATACCAATACATGAAGATCT 1319
|||||||| |||||||||| | ||||| | ||||| ||| ||||||||||||||||||||
Sbjct 1280 GGAAGGGTATTGATCTATTTC-GTAAAGCTTATAT-TTTCATACCAATACATGAAGATCT 1337
Query 1320 TCACTGGAGC-TTAGTCATAATTTGCATCCCAGACAAGGAGGACGAATCGGGATTGACTA 1378
||| |||||| || || ||| |||||||||| || ||| | || |||||||| |||||||
Sbjct 1338 TCATTGGAGCCTT-GTGATAGTTTGCATCCCTGATAAGAAAGATGAATCGGGGTTGACTA 1396
Query 1379 TAATTCAC-TTGGATTCATTGGGACTTCACCCAAGAAATTTGATT-TTCAATAATGTCAA 1436
|| ||||| ||| |||| || ||||||||| | ||||| | ||| || || || || ||
Sbjct 1397 TACTTCACCTTG-ATTCTTTAGGACTTCACTCGAGAAAATCAATTGTTGAA-AACGTAAA 1454
Query 1437 AAGATTTCTGAGAGAGGAATGGAACTATCTAAATCAAGATGCT----CCATTGGATTTAC 1492
||| ||||||| ||| |||||||| ||| | |||||||||| | || |||||| |||
Sbjct 1455 AAGGTTTCTGAAAGACGAATGGAATTATTTGAATCAAGATGATTATTCC-TTGGATCTAC 1513
Query 1493 CAATTTCAGCAAAAGTATGGAGAGACCTTCC-CAATATGATCAACGAAGCTGA-AGTGCA 1550
| || |||| ||||||||||| | |||| || | || ||||| ||||||||| | | ||
Sbjct 1514 CTATCTCAGAAAAAGTATGGAAAAACCTCCCTCG-TAGGATCAGCGAAGCTGATA-TACA 1571
Query 1551 GGTTCCACAACAGAAGAACGATTTCGACTGTGGTCTGTTTCTGCTCTTCTTCATA-AGAC 1609
|||||| || ||||| |||||||| || ||||||| |||| ||||||||||||| | ||
Sbjct 1572 GGTTCCGCAGCAGAAAAACGATTTTGATTGTGGTCCGTTTGTGCTCTTCTTCATTCA-AC 1630
Query 1610 GTTTCATCGAAGAGGCTCCTCAAAGGCTGACATTGCAGGATTTGAAAATGATTC-ACAAG 1668
| |||||||||||||| ||||||||| ||| | | | ||| ||| |||| ||| |||||
Sbjct 1631 GGTTCATCGAAGAGGCACCTCAAAGGTTGAAAAGGAAAGATCTGAGAATG-TTCGACAAG 1689
Query 1669 AAGTGGTTTAAACCGGAAGAAGCTTCCGCTTTGAGGATCAAAATCTGGAACATACTCGTT 1728
|||||||||| ||| || |||||||| ||| |||| ||||||||| | |||| |||| |
Sbjct 1690 AAGTGGTTTAGACCCGATGAAGCTTCTGCTCTGAGAATCAAAATCCGAAACACACTCATC 1749
Query 1729 GATCTATTCCG 1739
|| ||||||||
Sbjct 1750 GAGCTATTCCG 1760
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72752367950
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5