BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G10580.1
Length=2073
Score E
Sequences producing significant alignments: (Bits) Value
Ahg910790 jgi|Araly1|910790|Al_scaffold_0001_1044 2839 0.0
Ahg355139 jgi|Araly1|355139|fgenesh1_pg.C_scaffold_7002312 152 9e-36
Ahg339306 jgi|Araly1|339306|fgenesh1_pg.C_scaffold_2001405 152 9e-36
> Ahg910790 jgi|Araly1|910790|Al_scaffold_0001_1044
Length=1719
Score = 2839 bits (1537), Expect = 0.0
Identities = 1663/1724 (96%), Gaps = 7/1724 (0%)
Strand=Plus/Plus
Query 73 ATGGATCTGATTCAATCCTACGAAGAAGAAGACGAAGCCGTTGCTTCCTCGCCGGAATCT 132
||||||||||||||||||||||| |||| | | |||||||||||||||||||||||||||
Sbjct 1 ATGGATCTGATTCAATCCTACGACGAAG-A-A-GAAGCCGTTGCTTCCTCGCCGGAATCT 57
Query 133 TCACCGCCTCGTATGTTAAAGGCGAAATCATCGGCGCCGGAGGTAGACGATACGGCACTA 192
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 58 TCACCGCCTCGTATGTTAAAGGCGAAATCATCGGCGCCGGAGGTAGACGATACGGCGTTA 117
Query 193 GCTCTCACGGTGGCTAACGTGAATCAATCGAAATCGAAGCCGATTGACCCGACTCAACAC 252
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 GCTCTCACGGTGGCTAGCGTGAATCAATCGAAATCGAAGCCGATTGACCCGACTCAACAC 177
Query 253 GTCGTCTT-TTATAACCCTACCCATGATCAGCTGTGGGCTCCGATGTT-CGGCCCCGCGC 310
|||||||| || |||||| |||||||| ||| ||||||||||||| || |||||||||||
Sbjct 178 GTCGTCTTGTT-TAACCCAACCCATGAGCAGATGTGGGCTCCGAT-TTACGGCCCCGCGC 235
Query 311 ATCCGTATGCGAAAGACGGGATCGCTCAAGGGATGCGGAATCATAAGCTAGGTTCTGTGG 370
|||||||||| |||||||||||||||||||||||||| ||||| |||||||| |||||||
Sbjct 236 ATCCGTATGCTAAAGACGGGATCGCTCAAGGGATGCGTAATCACAAGCTAGGGTCTGTGG 295
Query 371 AAGATGCTTCGATTGGATCGTTTGGGTTTGAAGAGCAGTACCATACGTTTCATAAGTGCG 430
||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||| ||
Sbjct 296 AAGATGCTTCGATTGGATCATTTGGGTTTGATGAGCAGTACAATACGTTTCATAAGTACG 355
Query 431 GTTACGCGGCGGATCCGTCTGGGATGAACTACGTCGGCGATGTTGAGGCGTTTAAGAAGA 490
|||||||||||||||||||||||||| | ||||||||||||||||||||||| ||| |||
Sbjct 356 GTTACGCGGCGGATCCGTCTGGGATGCATTACGTCGGCGATGTTGAGGCGTTGAAGCAGA 415
Query 491 ACGATGGTCTTTCGGTTTTTAATATTCCTCagagtgagcagaagcggaggaagattgaga 550
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 416 ACGATGGTCTTTCGGTTTATAATATTCCTCAGAGTGAGCAGAAGCGGAGGAAGATTGAGA 475
Query 551 ggagcaaagaggagagggaaggggaagagaaaaaggaagagattgagccggaagctgaga 610
|| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 476 AGAATAAAGAGGAGAGGGAAGGGGAAGAGAAAAAGGAAGAGCTTGAGCCGGAAGCTGAGA 535
Query 611 aTCCGGAGACGGAAGCTTGGCTTAGGAAGAATAGGAAGAGTCCGTGGTCGAGGAAGAAGG 670
|||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 536 ATCCGGCGACGGAAGCTTGGCTTATGAAGAATAGGAAGAGTCCATGGTCGAGGAAGAAGG 595
Query 671 AGGTGGTTCAGGGAGAGTTGACGGAGGAGCAGAAGAAGTATGCGGAGGATCATGCCAAGA 730
|| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 596 AGTTGGTTCAGGGAGAGTTGACGGAGGAGCAGAAGAAGTATGCGGAGGATCACGCTAAGA 655
Query 731 AGAAGGAGGAGAAGGGACAACAAGGTGAAACCAAAGGAGAGCATTATGCGGATAAGAGTA 790
||||||| ||||| ||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 656 AGAAGGAAGAGAAAGGACAACAAGGTGAAGCCAAAGGGGAGCATTATGCGGATAAGAGTA 715
Query 791 CCTTCCATGGCAAAGAGGAGAAAGATTATCAAGGAAGGTCTTGGATTGAGGCTCCTAAAG 850
| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 716 CATTCCATGGCAAAGAGGAGAAAGATTACCAAGGAAGGTCTTGGATTGAGGCTCCAAAAG 775
Query 851 ATGCTAAGGCGAACAATGATCATTGCTACATTCCAAAACGTTTGGTTCATACATGGAGTG 910
|||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 776 ATGCAAAAGCGAACAATGATCATTGTTACATTCCAAAACGTTTGGTTCATACATGGAGTG 835
Query 911 GGCACACGAAAGGTGTTTCCGCTATTAGGTTCTTCCCAAAGCAAGGACATTTGCTTCTCT 970
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 836 GTCACACGAAAGGTGTTTCTGCTATTAGGTTCTTCCCAAAGCAAGGACATTTGCTTCTCT 895
Query 971 CTGCAGGTATGGATTGTAAGGTTAAGATTTGGGATGTGTATAACTCTGGTAAATGTATGA 1030
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 CTGCAGGTATGGATTGTAAGGTTAAGATTTGGGATGTGTATAACTCTGGTAAATGTATGA 955
Query 1031 GGACTTACATGGGTCACGCCAAAGCTGTGAGGGATATTTGCTTCTCCAATGATGGGTCTA 1090
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 956 GGACTTACATGGGTCATGCCAAAGCTGTGAGGGATATTTGCTTTTCCAATGATGGGTCTA 1015
Query 1091 AATTCTTGACTGCTGGGTATGATAAGAACATTAAGTATTGGGACACGGAAACTGGCCAAG 1150
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 AGTTCTTAACTGCTGGGTATGATAAGAACATTAAGTATTGGGACACGGAAACTGGCCAAG 1075
Query 1151 TTATATCGACTTTCTCCACTGGGAAGATTCCGTATGTGGTTAAGCTGAATCCGGATGATG 1210
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1076 TTATATCGACTTTCTCTACTGGGAAGATTCCGTATGTGGTGAAGCTGAATCCGGATGATG 1135
Query 1211 ACAAGCAGAACATTTTGTTGGCTGGTATGAGTGATAAGAAGATTGTGCAGTGGGATATTA 1270
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1136 ACAAGCAGAACATTTTGTTGGCTGGTATGAGTGATAAGAAGATTGTGCAGTGGGATATCA 1195
Query 1271 ATACGGGGGAGGTTACGCAAGAGTATGATCAGCACTTGGGGGCAGTTAATACTATCACAT 1330
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 ATACGGGGGAGATTACACAAGAGTATGATCAGCACTTGGGGGCAGTTAATACTATCACAT 1255
Query 1331 TTGTGGACAATAACAGAAGATTTGTCACGTCGAGCGATGATAAGTCTCTCCGTGTTTGGG 1390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 TTGTGGACAATAACAGAAGATTTGTCACGTCGAGCGATGATAAGTCTCTCCGTGTTTGGG 1315
Query 1391 AATTTGGGATCCCGGTGGTTATCAAGTATATCAGTGAGCCTCATATGCATTCTATGCCTT 1450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1316 AATTTGGGATCCCGGTGGTTATCAAGTATATCAGTGAGCCTCATATGCATTCTATGCCTT 1375
Query 1451 CCATTTCTGTTCACCCGAATGGAAACTGGCTTGCTGCACAGAGTTTGGATAACCAGATTC 1510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1376 CCATTTCTGTTCACCCGAATGGAAACTGGCTTGCTGCACAGAGTTTGGATAACCAGATTC 1435
Query 1511 TGATCTACAGTACCCGAGAAAGGTTTCAGCTGAATAAAAAGAAGAGGTTTGCAGGGCACA 1570
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1436 TGATCTATAGTACCCGAGAAAGGTTTCAGCTGAATAAAAAGAAGAGGTTTGCAGGGCACA 1495
Query 1571 TTGTTGCCGGTTATGCATGCCAAGTTAACTTCTCGCCAGATGGACGGTTTGTAATGTCAG 1630
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1496 TTGTTGCCGGTTACGCATGCCAAGTTAACTTCTCCCCAGATGGACGGTTTGTAATGTCAG 1555
Query 1631 GAGATGGTGAGGGTAAGTGCTGGTTTTGGGACTGGAAGAGCTGCAAAGTGTTTAGGACTC 1690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1556 GAGATGGTGAGGGTAAGTGCTGGTTTTGGGACTGGAAGAGCTGCAAAGTGTTTAGGACTC 1615
Query 1691 TTAAATGTCACAATGGAGTATGCATTGGAGCCGAGTGGCATCCTCTGGAACAGAGTAAAG 1750
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1616 TTAAATGTCACAATGGAGTATGCATTGGAGCCGAGTGGCATCCTCTGGAACAGAGTAAAG 1675
Query 1751 TCGCAACTTGTGGTTGGGACGGCTTGATTAAGTACTGGGACTAA 1794
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1676 TCGCAACTTGTGGTTGGGACGGCTTGATTAAGTACTGGGACTAA 1719
> Ahg355139 jgi|Araly1|355139|fgenesh1_pg.C_scaffold_7002312
Length=1965
Score = 152 bits (82), Expect = 9e-36
Identities = 92/97 (95%), Gaps = 0/97 (0%)
Strand=Plus/Plus
Query 747 ACAACAAGGTGAAACCAAAGGAGAGCATTATGCGGATAAGAGTACCTTCCATGGCAAAGA 806
||||||||||||| ||||||| ||||||||||| ||||||||||| ||||||||||||||
Sbjct 945 ACAACAAGGTGAAGCCAAAGGGGAGCATTATGCAGATAAGAGTACATTCCATGGCAAAGA 1004
Query 807 GGAGAAAGATTATCAAGGAAGGTCTTGGATTGAGGCT 843
||||||||||||||||||||||||||||||| |||||
Sbjct 1005 GGAGAAAGATTATCAAGGAAGGTCTTGGATTAAGGCT 1041
> Ahg339306 jgi|Araly1|339306|fgenesh1_pg.C_scaffold_2001405
Length=1836
Score = 152 bits (82), Expect = 9e-36
Identities = 92/97 (95%), Gaps = 0/97 (0%)
Strand=Plus/Plus
Query 747 ACAACAAGGTGAAACCAAAGGAGAGCATTATGCGGATAAGAGTACCTTCCATGGCAAAGA 806
||||||||||||| ||||||| ||||||||||| ||||||||||| ||||||||||||||
Sbjct 945 ACAACAAGGTGAAGCCAAAGGGGAGCATTATGCAGATAAGAGTACATTCCATGGCAAAGA 1004
Query 807 GGAGAAAGATTATCAAGGAAGGTCTTGGATTGAGGCT 843
||||||||||||||||||||||||||||||| |||||
Sbjct 1005 GGAGAAAGATTATCAAGGAAGGTCTTGGATTAAGGCT 1041
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77970731515
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5