BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G10585.1
Length=761
Score E
Sequences producing significant alignments: (Bits) Value
Ahg312099 jgi|Araly1|312099|fgenesh1_pm.C_scaffold_1000879 732 0.0
Ahg471177 jgi|Araly1|471177|fgenesh2_kg.1__1131__AT1G10586.1 643 0.0
> Ahg312099 jgi|Araly1|312099|fgenesh1_pm.C_scaffold_1000879
Length=564
Score = 732 bits (396), Expect = 0.0
Identities = 512/563 (91%), Gaps = 28/563 (5%)
Strand=Plus/Plus
Query 41 ATGGGGAGAGCAAGAGAAATAGGAGAAGGAAACTCATCGTCGTTAAGGGAACAACGAAAC 100
|||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGAGGGCAAGAGAAATAGGAGATGGAAACTCATCGTCGTTAAGGGAACAACGAAAC 60
Query 101 CTCAGAGAGAAGGATCGAAGGATGCGCATGAAACATCTCTTCTCTATACTTTCTTCTCAT 160
|||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||
Sbjct 61 CTCAGAGAGAAGGATCGAAGGATGCGCATGAAACATCTATTCTCTAAACTCTCTTCTCAT 120
Query 161 GTTTCTCCCACTCGCAAGTTACCAGTGCCTCACCTTATAGATCAAGCGACATCATACATG 220
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 121 GTTTCTCCCACTCGCAAGTTACCAGTGCCTCAACTTATAGATCAAGCGACATCATTCATG 180
Query 221 ATCCAATTGAAAGAGAATGTAAATTATTTGAAAGAGAAGAAAAGGACATTGTTACAAGGA 280
|||||| ||||||| || ||||||||||||||||||||||||||||||||| | ||||||
Sbjct 181 ATCCAACTGAAAGACAAGGTAAATTATTTGAAAGAGAAGAAAAGGACATTGGTGCAAGGA 240
Query 281 GAACTCGGGAATCTCTACGAAGGGTCGTTTCTTCTACCCAAACTCAGTATTCGTTCGCGG 340
||||||||||||||||| ||||||||||||||||| || ||||||||| |||||||||||
Sbjct 241 GAACTCGGGAATCTCTATGAAGGGTCGTTTCTTCTGCCGAAACTCAGTCTTCGTTCGCGG 300
Query 341 GATTCGACCATAGAAATGAATCTGATCATGGATCTAAACATGAAAAGAGTAATGTTACAC 400
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 301 GATTCGACCATAGAATTGAATCTGATTATGGATCTAAACATGAAAAGAGTAATGTTACAC 360
Query 401 GAGCTTGTGAGTATTTTTGAAGAAGAAGGAGCTCAAGTAATGAGTGCTAATCTTCAGAAC 460
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 361 GAGCTTGTGAGTATTTTTGAAGAAGAAGGAGCTCAAATAATGAGTGCAAATCTTCAGAAC 420
Query 461 TTGAATGATAGGACCACTTACACAATCATAGCCCAGG--C----T--A-TCAT-T----- 505
||||||||||||||||||||||||||||||||||||| | | | |||| |
Sbjct 421 TTGAATGATAGGACCACTTACACAATCATAGCCCAGGTACCACATCCACTCATATGTTTG 480
Query 506 -A-G-T--C----G--G-ATTGGCATTGATCCATCAAGGATAGAAGAGAGAGTACGGAAA 553
| | | | | | || |||||||||||||||||||||||||||||||||||||||
Sbjct 481 TATGCTATCATTAGTCGGATCGGCATTGATCCATCAAGGATAGAAGAGAGAGTACGGAAA 540
Query 554 ATCATCTATGGATATATATATTT 576
||||| ||||||||||||| |||
Sbjct 541 ATCATTTATGGATATATAT-TTT 562
> Ahg471177 jgi|Araly1|471177|fgenesh2_kg.1__1131__AT1G10586.1
Length=755
Score = 643 bits (348), Expect = 0.0
Identities = 495/566 (87%), Gaps = 10/566 (2%)
Strand=Plus/Plus
Query 23 TAAAAGAAAACAAAAAGAATGGGGAGAGCAAGAGAAATAGGAGAAGGAAACTCATCGTCG 82
|||| || |||||||||||||| |||| ||||||||||||||||||| | ||||||||
Sbjct 26 TAAAGGAGAACAAAAAGAATGGAAAGAGGGAGAGAAATAGGAGAAGGAAGCGCATCGTCG 85
Query 83 TTAAGGGAACAACGAAACCTCAGAGAGAAGGATCGAAGGATGCGCATGAAACATCTCTTC 142
||||||||||||||||||||||||||||| || ||| | |||||||||||||||||||||
Sbjct 86 TTAAGGGAACAACGAAACCTCAGAGAGAAAGAGCGACGAATGCGCATGAAACATCTCTTC 145
Query 143 TCTATACTTTCTTCTCATGTTTCTCCCACTCGCAAGTTACCAGTGCCTCACCTTATAGAT 202
||| ||| ||||||||||||||||||||||| | ||| ||||||||||| |||||||||
Sbjct 146 TCTGCACTCTCTTCTCATGTTTCTCCCACTCGTAGGTTGCCAGTGCCTCAACTTATAGAT 205
Query 203 CAAGCGACATCATACATGATCCAATTGAAAGAGAATGTAAATTATTTGAAAGAGAAGAAA 262
|||||| ||||||||||||||||||||||||||| ||||| | |||||| |||||||||
Sbjct 206 CAAGCGGTATCATACATGATCCAATTGAAAGAGAAGGTAAACTGTTTGAATGAGAAGAAA 265
Query 263 AGGACATTGTTACA-AGGAGAACTCGGGAATCTCTAC-GAAGGGTCGTTTCTTCTACCCA 320
| || |||||| | ||||||| || |||| || | | |||||||| |||||| || |
Sbjct 266 ATGAGTTTGTTA-AGAGGAGAAGTCAAAAATCGCT-CTGCAGGGTCGTCTCTTCTGCCAA 323
Query 321 AACTCAGTATTCGTTCGCGGGATTCGACCATAGAAATGAATCTGATCATGGATCTAAACA 380
|||||||||||||||| ||||||||| |||||||||||||||| | |||||||||||||
Sbjct 324 AACTCAGTATTCGTTCACGGGATTCGGTCATAGAAATGAATCTGGTTATGGATCTAAACA 383
Query 381 TGAAAAGAGTAATGTTACACGAGCTTGTGAGTATTTTTGAAGAAGAAGGAGCTCAAGTAA 440
|||||||| ||||| ||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 384 TGAAAAGAATAATGCTACACAAGCTTGTGAGTGTTTTTGAAGAAGAAGGAGCTCAAGTAA 443
Query 441 TGAGTGCTAATCTTCAGAACTTGAATGATAGGACCA-CTTACACAATCATAGCCCAGGCT 499
|||||| |||||||||||||||||||||||||||| || | ||||||||||||||||||
Sbjct 444 TGAGTGTTAATCTTCAGAACTTGAATGATAGGACCTTCT-ATACAATCATAGCCCAGGCT 502
Query 500 ATCATTAGTCGGATTGGCATTGATCCATCAAGGATAGAAGAGAGAGTACGGAAAATCATC 559
|| ||| || |||| || ||||||||||||||||||||| ||||| || || | || |||
Sbjct 503 ATTATTTGTAGGATCGGGATTGATCCATCAAGGATAGAAAAGAGACTAAGGGATATAATC 562
Query 560 T-ATGGATATATATATTTTGAAGCAT 584
| ||| || || || |||||||||||
Sbjct 563 TCATG-AT-TA-ATTTTTTGAAGCAT 585
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28058466912
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5