BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G10585.1 Length=761 Score E Sequences producing significant alignments: (Bits) Value Ahg312099 jgi|Araly1|312099|fgenesh1_pm.C_scaffold_1000879 732 0.0 Ahg471177 jgi|Araly1|471177|fgenesh2_kg.1__1131__AT1G10586.1 643 0.0 > Ahg312099 jgi|Araly1|312099|fgenesh1_pm.C_scaffold_1000879 Length=564 Score = 732 bits (396), Expect = 0.0 Identities = 512/563 (91%), Gaps = 28/563 (5%) Strand=Plus/Plus Query 41 ATGGGGAGAGCAAGAGAAATAGGAGAAGGAAACTCATCGTCGTTAAGGGAACAACGAAAC 100 |||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1 ATGGCGAGGGCAAGAGAAATAGGAGATGGAAACTCATCGTCGTTAAGGGAACAACGAAAC 60 Query 101 CTCAGAGAGAAGGATCGAAGGATGCGCATGAAACATCTCTTCTCTATACTTTCTTCTCAT 160 |||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||| Sbjct 61 CTCAGAGAGAAGGATCGAAGGATGCGCATGAAACATCTATTCTCTAAACTCTCTTCTCAT 120 Query 161 GTTTCTCCCACTCGCAAGTTACCAGTGCCTCACCTTATAGATCAAGCGACATCATACATG 220 |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| Sbjct 121 GTTTCTCCCACTCGCAAGTTACCAGTGCCTCAACTTATAGATCAAGCGACATCATTCATG 180 Query 221 ATCCAATTGAAAGAGAATGTAAATTATTTGAAAGAGAAGAAAAGGACATTGTTACAAGGA 280 |||||| ||||||| || ||||||||||||||||||||||||||||||||| | |||||| Sbjct 181 ATCCAACTGAAAGACAAGGTAAATTATTTGAAAGAGAAGAAAAGGACATTGGTGCAAGGA 240 Query 281 GAACTCGGGAATCTCTACGAAGGGTCGTTTCTTCTACCCAAACTCAGTATTCGTTCGCGG 340 ||||||||||||||||| ||||||||||||||||| || ||||||||| ||||||||||| Sbjct 241 GAACTCGGGAATCTCTATGAAGGGTCGTTTCTTCTGCCGAAACTCAGTCTTCGTTCGCGG 300 Query 341 GATTCGACCATAGAAATGAATCTGATCATGGATCTAAACATGAAAAGAGTAATGTTACAC 400 ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| Sbjct 301 GATTCGACCATAGAATTGAATCTGATTATGGATCTAAACATGAAAAGAGTAATGTTACAC 360 Query 401 GAGCTTGTGAGTATTTTTGAAGAAGAAGGAGCTCAAGTAATGAGTGCTAATCTTCAGAAC 460 |||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| Sbjct 361 GAGCTTGTGAGTATTTTTGAAGAAGAAGGAGCTCAAATAATGAGTGCAAATCTTCAGAAC 420 Query 461 TTGAATGATAGGACCACTTACACAATCATAGCCCAGG--C----T--A-TCAT-T----- 505 ||||||||||||||||||||||||||||||||||||| | | | |||| | Sbjct 421 TTGAATGATAGGACCACTTACACAATCATAGCCCAGGTACCACATCCACTCATATGTTTG 480 Query 506 -A-G-T--C----G--G-ATTGGCATTGATCCATCAAGGATAGAAGAGAGAGTACGGAAA 553 | | | | | | || ||||||||||||||||||||||||||||||||||||||| Sbjct 481 TATGCTATCATTAGTCGGATCGGCATTGATCCATCAAGGATAGAAGAGAGAGTACGGAAA 540 Query 554 ATCATCTATGGATATATATATTT 576 ||||| ||||||||||||| ||| Sbjct 541 ATCATTTATGGATATATAT-TTT 562 > Ahg471177 jgi|Araly1|471177|fgenesh2_kg.1__1131__AT1G10586.1 Length=755 Score = 643 bits (348), Expect = 0.0 Identities = 495/566 (87%), Gaps = 10/566 (2%) Strand=Plus/Plus Query 23 TAAAAGAAAACAAAAAGAATGGGGAGAGCAAGAGAAATAGGAGAAGGAAACTCATCGTCG 82 |||| || |||||||||||||| |||| ||||||||||||||||||| | |||||||| Sbjct 26 TAAAGGAGAACAAAAAGAATGGAAAGAGGGAGAGAAATAGGAGAAGGAAGCGCATCGTCG 85 Query 83 TTAAGGGAACAACGAAACCTCAGAGAGAAGGATCGAAGGATGCGCATGAAACATCTCTTC 142 ||||||||||||||||||||||||||||| || ||| | ||||||||||||||||||||| Sbjct 86 TTAAGGGAACAACGAAACCTCAGAGAGAAAGAGCGACGAATGCGCATGAAACATCTCTTC 145 Query 143 TCTATACTTTCTTCTCATGTTTCTCCCACTCGCAAGTTACCAGTGCCTCACCTTATAGAT 202 ||| ||| ||||||||||||||||||||||| | ||| ||||||||||| ||||||||| Sbjct 146 TCTGCACTCTCTTCTCATGTTTCTCCCACTCGTAGGTTGCCAGTGCCTCAACTTATAGAT 205 Query 203 CAAGCGACATCATACATGATCCAATTGAAAGAGAATGTAAATTATTTGAAAGAGAAGAAA 262 |||||| ||||||||||||||||||||||||||| ||||| | |||||| ||||||||| Sbjct 206 CAAGCGGTATCATACATGATCCAATTGAAAGAGAAGGTAAACTGTTTGAATGAGAAGAAA 265 Query 263 AGGACATTGTTACA-AGGAGAACTCGGGAATCTCTAC-GAAGGGTCGTTTCTTCTACCCA 320 | || |||||| | ||||||| || |||| || | | |||||||| |||||| || | Sbjct 266 ATGAGTTTGTTA-AGAGGAGAAGTCAAAAATCGCT-CTGCAGGGTCGTCTCTTCTGCCAA 323 Query 321 AACTCAGTATTCGTTCGCGGGATTCGACCATAGAAATGAATCTGATCATGGATCTAAACA 380 |||||||||||||||| ||||||||| |||||||||||||||| | ||||||||||||| Sbjct 324 AACTCAGTATTCGTTCACGGGATTCGGTCATAGAAATGAATCTGGTTATGGATCTAAACA 383 Query 381 TGAAAAGAGTAATGTTACACGAGCTTGTGAGTATTTTTGAAGAAGAAGGAGCTCAAGTAA 440 |||||||| ||||| ||||| ||||||||||| ||||||||||||||||||||||||||| Sbjct 384 TGAAAAGAATAATGCTACACAAGCTTGTGAGTGTTTTTGAAGAAGAAGGAGCTCAAGTAA 443 Query 441 TGAGTGCTAATCTTCAGAACTTGAATGATAGGACCA-CTTACACAATCATAGCCCAGGCT 499 |||||| |||||||||||||||||||||||||||| || | |||||||||||||||||| Sbjct 444 TGAGTGTTAATCTTCAGAACTTGAATGATAGGACCTTCT-ATACAATCATAGCCCAGGCT 502 Query 500 ATCATTAGTCGGATTGGCATTGATCCATCAAGGATAGAAGAGAGAGTACGGAAAATCATC 559 || ||| || |||| || ||||||||||||||||||||| ||||| || || | || ||| Sbjct 503 ATTATTTGTAGGATCGGGATTGATCCATCAAGGATAGAAAAGAGACTAAGGGATATAATC 562 Query 560 T-ATGGATATATATATTTTGAAGCAT 584 | ||| || || || ||||||||||| Sbjct 563 TCATG-AT-TA-ATTTTTTGAAGCAT 585 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 28058466912 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5