BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G10586.1
Length=771
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471177 jgi|Araly1|471177|fgenesh2_kg.1__1131__AT1G10586.1 992 0.0
> Ahg471177 jgi|Araly1|471177|fgenesh2_kg.1__1131__AT1G10586.1
Length=755
Score = 992 bits (537), Expect = 0.0
Identities = 693/766 (90%), Gaps = 20/766 (3%)
Strand=Plus/Plus
Query 1 GAGGGAATTAAACATAGTAACCTaaaaaaggaaaagaagaagaatggaaagagcgagaga 60
||| ||||||||||||||||||||| |||||| || || |||||||||||||| ||||||
Sbjct 1 GAGAGAATTAAACATAGTAACCTAATAAAGGAGAACAAAAAGAATGGAAAGAGGGAGAGA 60
Query 61 aataggagaaggaagCGCATCGTCATTACGGGAACAACGAAACCTCAGAGAGAAAGAACG 120
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||
Sbjct 61 AATAGGAGAAGGAAGCGCATCGTCGTTAAGGGAACAACGAAACCTCAGAGAGAAAGAGCG 120
Query 121 ACGAATGCGCATGAAACATCTCTTCTCCATACTCTCTTCTCATGTTTCTCCCACTCGTAG 180
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 121 ACGAATGCGCATGAAACATCTCTTCTCTGCACTCTCTTCTCATGTTTCTCCCACTCGTAG 180
Query 181 GTTGCCAGTGCCTCAACTTATAGATCAAGCGGTATCATACATGATCCAACTGAAAGAGAA 240
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 181 GTTGCCAGTGCCTCAACTTATAGATCAAGCGGTATCATACATGATCCAATTGAAAGAGAA 240
Query 241 GGTAAACTATTTGAATGAGATGAAAAGGAGAATGTTAGGAGGAGAAGTCAAAAATCGCTC 300
|||||||| ||||||||||| ||||| ||| ||||| ||||||||||||||||||||||
Sbjct 241 GGTAAACTGTTTGAATGAGAAGAAAATGAGTTTGTTAAGAGGAGAAGTCAAAAATCGCTC 300
Query 301 TGAAGGGTCGTCTCTTCTGCCAAAACTCAGTATTCGTTCACTGGATTCGATCATAGAAAT 360
|| |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 301 TGCAGGGTCGTCTCTTCTGCCAAAACTCAGTATTCGTTCACGGGATTCGGTCATAGAAAT 360
Query 361 GAATCTGGTTATGGATCTAAACATGAAAGGAGTAATGTTACACAAGCTTGTGAGTGTTTT 420
|||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||
Sbjct 361 GAATCTGGTTATGGATCTAAACATGAAAAGAATAATGCTACACAAGCTTGTGAGTGTTTT 420
Query 421 TGAAGAAGAAGGAGCTCAAGTGATGAGTGCTAATCTTCAGAACTTGAATGATAGGACCTT 480
||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 421 TGAAGAAGAAGGAGCTCAAGTAATGAGTGTTAATCTTCAGAACTTGAATGATAGGACCTT 480
Query 481 TTATACAATCATAGCCCAGGCTATCATATGTCGGATCGGGATTGATCCATCAAGGATAGA 540
||||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||
Sbjct 481 CTATACAATCATAGCCCAGGCTATTATTTGTAGGATCGGGATTGATCCATCAAGGATAGA 540
Query 541 AGAGAGATTAAGGGATATAATCTCATGATTAATTTTTTGAAGCATTATTGAATCCCAA-- 598
| ||||| |||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 541 AAAGAGACTAAGGGATATAATCTCATGATTAATTTTTTGAAGCATTTTTAAATCCCAATT 600
Query 599 A--TCACAAGTCTTTTCTTAACAAATTAAATGTGT--T-AGTTCTTTAAACATGAGAT-T 652
| |||||||||| | | ||| || ||||| | |||||||||||||||||| |
Sbjct 601 AAATCACAAGTCTACGAT-ATTAAAG-AA-TGTGTAATTAGTTCTTTAAACATGAGAGAT 657
Query 653 AT-GAGTATTTTTAAGAGTGAATTGGTGTAATAGCCCTATTGTTGTTTAAGTTAAAGAGA 711
| ||||||||| |||||||||||||||||||||||||||| |||||||| || |
Sbjct 658 GTTGAGTATTTTAAAGAGTGAATTGGTGTAATAGCCCTATTATTGTTTAA---AATGTC- 713
Query 712 ATGATCAAATGTCTGAATACCATTTCCTCAAGTATATGAACGAAAA 757
|||| ||| || || |||||||||||||||||||| |||||||
Sbjct 714 -TGATTAAA-GTAA-AA-ACCATTTCCTCAAGTATATGGACGAAAA 755
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28439696082
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5