BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G10586.1 Length=771 Score E Sequences producing significant alignments: (Bits) Value Ahg471177 jgi|Araly1|471177|fgenesh2_kg.1__1131__AT1G10586.1 992 0.0 > Ahg471177 jgi|Araly1|471177|fgenesh2_kg.1__1131__AT1G10586.1 Length=755 Score = 992 bits (537), Expect = 0.0 Identities = 693/766 (90%), Gaps = 20/766 (3%) Strand=Plus/Plus Query 1 GAGGGAATTAAACATAGTAACCTaaaaaaggaaaagaagaagaatggaaagagcgagaga 60 ||| ||||||||||||||||||||| |||||| || || |||||||||||||| |||||| Sbjct 1 GAGAGAATTAAACATAGTAACCTAATAAAGGAGAACAAAAAGAATGGAAAGAGGGAGAGA 60 Query 61 aataggagaaggaagCGCATCGTCATTACGGGAACAACGAAACCTCAGAGAGAAAGAACG 120 |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| || Sbjct 61 AATAGGAGAAGGAAGCGCATCGTCGTTAAGGGAACAACGAAACCTCAGAGAGAAAGAGCG 120 Query 121 ACGAATGCGCATGAAACATCTCTTCTCCATACTCTCTTCTCATGTTTCTCCCACTCGTAG 180 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 121 ACGAATGCGCATGAAACATCTCTTCTCTGCACTCTCTTCTCATGTTTCTCCCACTCGTAG 180 Query 181 GTTGCCAGTGCCTCAACTTATAGATCAAGCGGTATCATACATGATCCAACTGAAAGAGAA 240 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 181 GTTGCCAGTGCCTCAACTTATAGATCAAGCGGTATCATACATGATCCAATTGAAAGAGAA 240 Query 241 GGTAAACTATTTGAATGAGATGAAAAGGAGAATGTTAGGAGGAGAAGTCAAAAATCGCTC 300 |||||||| ||||||||||| ||||| ||| ||||| |||||||||||||||||||||| Sbjct 241 GGTAAACTGTTTGAATGAGAAGAAAATGAGTTTGTTAAGAGGAGAAGTCAAAAATCGCTC 300 Query 301 TGAAGGGTCGTCTCTTCTGCCAAAACTCAGTATTCGTTCACTGGATTCGATCATAGAAAT 360 || |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| Sbjct 301 TGCAGGGTCGTCTCTTCTGCCAAAACTCAGTATTCGTTCACGGGATTCGGTCATAGAAAT 360 Query 361 GAATCTGGTTATGGATCTAAACATGAAAGGAGTAATGTTACACAAGCTTGTGAGTGTTTT 420 |||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||| Sbjct 361 GAATCTGGTTATGGATCTAAACATGAAAAGAATAATGCTACACAAGCTTGTGAGTGTTTT 420 Query 421 TGAAGAAGAAGGAGCTCAAGTGATGAGTGCTAATCTTCAGAACTTGAATGATAGGACCTT 480 ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| Sbjct 421 TGAAGAAGAAGGAGCTCAAGTAATGAGTGTTAATCTTCAGAACTTGAATGATAGGACCTT 480 Query 481 TTATACAATCATAGCCCAGGCTATCATATGTCGGATCGGGATTGATCCATCAAGGATAGA 540 ||||||||||||||||||||||| || ||| |||||||||||||||||||||||||||| Sbjct 481 CTATACAATCATAGCCCAGGCTATTATTTGTAGGATCGGGATTGATCCATCAAGGATAGA 540 Query 541 AGAGAGATTAAGGGATATAATCTCATGATTAATTTTTTGAAGCATTATTGAATCCCAA-- 598 | ||||| |||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 541 AAAGAGACTAAGGGATATAATCTCATGATTAATTTTTTGAAGCATTTTTAAATCCCAATT 600 Query 599 A--TCACAAGTCTTTTCTTAACAAATTAAATGTGT--T-AGTTCTTTAAACATGAGAT-T 652 | |||||||||| | | ||| || ||||| | |||||||||||||||||| | Sbjct 601 AAATCACAAGTCTACGAT-ATTAAAG-AA-TGTGTAATTAGTTCTTTAAACATGAGAGAT 657 Query 653 AT-GAGTATTTTTAAGAGTGAATTGGTGTAATAGCCCTATTGTTGTTTAAGTTAAAGAGA 711 | ||||||||| |||||||||||||||||||||||||||| |||||||| || | Sbjct 658 GTTGAGTATTTTAAAGAGTGAATTGGTGTAATAGCCCTATTATTGTTTAA---AATGTC- 713 Query 712 ATGATCAAATGTCTGAATACCATTTCCTCAAGTATATGAACGAAAA 757 |||| ||| || || |||||||||||||||||||| ||||||| Sbjct 714 -TGATTAAA-GTAA-AA-ACCATTTCCTCAAGTATATGGACGAAAA 755 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 28439696082 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5