BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G10588.1
Length=596
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471179 jgi|Araly1|471179|fgenesh2_kg.1__1133__AT1G10588.1 734 0.0
Ahg484630 jgi|Araly1|484630|fgenesh2_kg.5__622__AT1G10588.2 508 1e-143
Ahg482976 jgi|Araly1|482976|fgenesh2_kg.4__2036__AT2G39540.1 244 4e-64
> Ahg471179 jgi|Araly1|471179|fgenesh2_kg.1__1133__AT1G10588.1
Length=526
Score = 734 bits (397), Expect = 0.0
Identities = 489/532 (92%), Gaps = 11/532 (2%)
Strand=Plus/Plus
Query 67 AACCAGAAATGAAGATGCCCGTGGTTGTACAATTCTTCATAATCTCTCTTCTCCTCACAT 126
||||| ||||||| |||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1 AACCAAAAATGAAAATGCTCGTGGCTGTACAATTCTTCATAATCTCTCTTCTCCTCACAT 60
Query 127 CTTCATTTTATGTACTTTCAAGCGCTGATTCATCAGCATGCGGTGGAAAGTGCAGTGTGA 186
||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 61 CTTCATTTTTTGTACTTTCAAGCGCTGATTCGTCAGCATGCGGTGGAAAGTGCAATGTGA 120
Query 187 GATGCTCAAAGGCAGATCGAACACATGAGGAGTGCCTTGAGGACTGCGATATATGTTGCC 246
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 121 GATGCTCAAAGGCAGATCGAACACATGAGGAGTGCCTTGAGGACTGCAATATATGTTGCC 180
Query 247 AGAAGTGTAATTGTGTTCCTTCGGGGACTTATGGAAACAAAGATGAATGTCCTTGCTACC 306
|| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 181 AGCAGTGTAATTGTGTTCCTTCGGGTACTTATGGAAACAAAGATGAATGTCCTTGCTACC 240
Query 307 GTGATATGAAAAACTCCAAAGGCGGATCCAAGTGTCCTTGAACATTCTTTGAAGATCCTC 366
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 241 GTGATATGAAAAACTCCAAAGGCGGATCCAAGTGTCCTTGAATATGCTTTGAAGATCCTC 300
Query 367 ATCACATACATATTATCTACGTACTATATGTATGGAAATTACATCTATATATGTTTGATG 426
|||||| ||||| |||||||||||||||||||| |||| || | ||||||||||||||
Sbjct 301 ATCACAAACATAACATCTACGTACTATATGTATGAAAAT--CA-C-ATATATGTTTGATG 356
Query 427 TATGAAATAAGTTCTGTGAGCTTAATGAAAATTTTGTTATCTTCAATCCGATTCCTAAAC 486
||||||| || ||| |||||||| |||||||| |||| |||| ||| ||||||||||||
Sbjct 357 TATGAAAAAA-TTCCATGAGCTTATTGAAAATTGTGTTTTCTTTAATTCGATTCCTAAAC 415
Query 487 ACATCAAGAATAAATCATGTCGAGGTTTATATTTCTCAGCTTCAATTTCACTAAACG-AA 545
|| | |||||||||||||||| |||||||||||||||||||||||||| |||||| | ||
Sbjct 416 AC-TAAAGAATAAATCATGTCAAGGTTTATATTTCTCAGCTTCAATTTAACTAAAAGCAA 474
Query 546 TAACTTGGGATACTAT----GATGGAATGCAGAATTGAGAATTTACTCTCTC 593
||||||||||||||| ||||| ||||| | ||||||||||||||||||
Sbjct 475 CAACTTGGGATACTATATATGATGGGATGCACATTTGAGAATTTACTCTCTC 526
> Ahg484630 jgi|Araly1|484630|fgenesh2_kg.5__622__AT1G10588.2
Length=514
Score = 508 bits (275), Expect = 1e-143
Identities = 335/362 (93%), Gaps = 11/362 (3%)
Strand=Plus/Plus
Query 22 TTTTAC-TAAACTAACTCTATCATAAAAGGAGAAAGCTTT-AAATTTAACCAGAAATGAA 79
|||||| |||| ||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 88 TTTTACGTAAA-TAACTCTATCA-AAAAGGAGAAAGCTTTAAAATTTAACCAGAAATGAA 145
Query 80 GATGCCCGTGGTTGTACAATTCTTCATAATCTCTCTTCTCCTCACATCTTCATTTTATGT 139
||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||| |||
Sbjct 146 GATGCTCGTGGTTGTACAATTCTTCATAATCTCTCTTCTACTCACATCATCATTTTTTGT 205
Query 140 ACTTTCAAGCGCTGATTCATCAGCATGCGGTGGAAAGTGCAG-TGTGAGATGCTCAAAGG 198
|||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||
Sbjct 206 ACTTTCAAGCGCTGATTCAT---CATGCGGTGGAAAGTGC-GATGTGAGATGCTCAAAGG 261
Query 199 CAGATCGAAC-ACATGAGGAGTGCCTTGAGGACTGCGATATATGTTGCCAGAAGTGTAAT 257
| ||||| || |||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 262 CTGATCG-ACAACATGAGGAGTGCCTTAAGGACTGCAATATATGTTGCCAGAAGTGTAAT 320
Query 258 TGTGTTCCTTCGGGGACTTATGGAAACAAAGATGAATGTCCTTGCTACCGTGATATGAAA 317
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 321 TGTGTTCCTTCGGGCACTTATGGAAACAAAGATGAATGTCCTTGCTACCGTGATTTGAAA 380
Query 318 AACTCCAAAGGCGGATCCAAGTGTCCTTGAACATTCTTTGAAGATCCTCATCACATACAT 377
||||| || |||| ||||||||||||||||||| ||||||||||||||||| |||| ||
Sbjct 381 AACTCTAAGGGCGAATCCAAGTGTCCTTGAACACGCTTTGAAGATCCTCATCGCATAGAT 440
Query 378 AT 379
||
Sbjct 441 AT 442
> Ahg482976 jgi|Araly1|482976|fgenesh2_kg.4__2036__AT2G39540.1
Length=246
Score = 244 bits (132), Expect = 4e-64
Identities = 212/248 (85%), Gaps = 16/248 (6%)
Strand=Plus/Plus
Query 111 TCTCTTCTCCTCACATCTTCATTTTATGTACTTTCAAGCGCTGATT-CATCAGCATGCGG 169
|||||||||||| ||||| |||||| ||||||||| |||||||||| | | |||||||
Sbjct 4 TCTCTTCTCCTCGCATCTACATTTTTTGTACTTTCTAGCGCTGATTGTGTTA-CATGCGG 62
Query 170 TGGAAAGTGCAGTGTGAGATGCTCAAAGGCA-GATCGAACACATGAGGAGTGCCTTGAGG 228
||||||||||| ||||||||||||||||||| || | | |||||| |||||||| ||
Sbjct 63 TGGAAAGTGCAATGTGAGATGCTCAAAGGCAGGA-C--A-ACATGAAGAGTGCCTCAAGT 118
Query 229 ACTGCGATATATGTTGCCAGAAGTGTAATTGT-----G---T-TCCTTCGGGGACTTATG 279
||| | ||||||||||||| |||||||||||| | | |||||||| |||| ||
Sbjct 119 ACTACAATATATGTTGCCATAAGTGTAATTGTACACGGCACTGTCCTTCGGACACTTTTG 178
Query 280 GAAACAAAGATGAATGTCCTTGCTACCGTGATATGAAAAACTCCAAAGGCGGATCCAAGT 339
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 179 GAAACAAAGATGAATGCCCTTGCTACCGTGATATGAAAAACTCCAAAGGCGGATCAAAGT 238
Query 340 GTCCTTGA 347
||||||||
Sbjct 239 GTCCTTGA 246
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21824996908
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5