BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G10590.3 Length=835 Score E Sequences producing significant alignments: (Bits) Value Ahg910794 jgi|Araly1|910794|Al_scaffold_0001_1048 689 0.0 > Ahg910794 jgi|Araly1|910794|Al_scaffold_0001_1048 Length=453 Score = 689 bits (373), Expect = 0.0 Identities = 427/453 (94%), Gaps = 3/453 (1%) Strand=Plus/Plus Query 71 ATGGCTAATTTTTGTAGGGTTGTTATAAAAATGGCTGAGGCAACGTCTGCTTTGAGGAAG 130 |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| Sbjct 1 ATGGCTAATTTTTGTACCGTTGTTATAAAAATGGCTGAGGCAACGCCTGCTTTGAGGAAG 60 Query 131 CCTGTGTTCACAAAGGTTAATGAGTTGAGACCAGGAACCAATGGCCACTCTCTGAATGTG 190 ||||||||||| |||||||||||| ||||||||||||||| ||| ||||| ||||||||| Sbjct 61 CCTGTGTTCACCAAGGTTAATGAGCTGAGACCAGGAACCAGTGGTCACTCGCTGAATGTG 120 Query 191 AAAGTTGTCAACACGAAGATGGTGATGC--AGA-GAGGAGGAGGTCGTCCCATGGGTCCT 247 |||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||| Sbjct 121 AAAGTTGTCAACACGAAGATGGTGTTGCAGAGAGGAGGAGGAGGTCGTCCCATGGGTCCT 180 Query 248 CAGTCACGTCAGATGCGGATTGCCGAATGCTTAGTTGGTGATGAGACTGGAATCATAATC 307 ||| ||||||||||||| ||||| ||||| ||||||||||| |||||||||||||||||| Sbjct 181 CAGGCACGTCAGATGCGAATTGCGGAATGTTTAGTTGGTGACGAGACTGGAATCATAATC 240 Query 308 TTTACTGCAAGAAATGACCAAGTGGATATGATGAAAGAAGGCAGTGTAGTGACTCTGCGT 367 ||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||| Sbjct 241 TTTACTGCAAGAAATGACCAAGTGGATTTGATGAAAGAGGGCAGTGTATTGACTCTGCGC 300 Query 368 AATGCGAAGATCGACATGTACAAGGGTTCTATGAGGCTTGCAGTTGATAGATGGGGACGT 427 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 301 AATGCGAAGATCGACATGTACAAGGGGTCTATGAGGCTTGCAGTTGATAGATGGGGACGT 360 Query 428 GTTGAAGTTGCAGAGGAGCCCACAGACATCACCGTGAAGGATGATAACAATCTTTCGCTG 487 ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 GTTGACGTCGCAGAGGAGCCCACAGACATCACCGTGAAGGATGATAACAATCTTTCGCTA 420 Query 488 ATCGAGTATGAGCTTGTGAGCGTCGAAACTTGA 520 ||||||||||||||||||||||||||| ||||| Sbjct 421 ATCGAGTATGAGCTTGTGAGCGTCGAAGCTTGA 453 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 30879562770 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5