BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G10590.3

Length=835
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg910794 jgi|Araly1|910794|Al_scaffold_0001_1048                    689    0.0  


> Ahg910794 jgi|Araly1|910794|Al_scaffold_0001_1048
Length=453

 Score =  689 bits (373),  Expect = 0.0
 Identities = 427/453 (94%), Gaps = 3/453 (1%)
 Strand=Plus/Plus

Query  71   ATGGCTAATTTTTGTAGGGTTGTTATAAAAATGGCTGAGGCAACGTCTGCTTTGAGGAAG  130
            ||||||||||||||||  ||||||||||||||||||||||||||| ||||||||||||||
Sbjct  1    ATGGCTAATTTTTGTACCGTTGTTATAAAAATGGCTGAGGCAACGCCTGCTTTGAGGAAG  60

Query  131  CCTGTGTTCACAAAGGTTAATGAGTTGAGACCAGGAACCAATGGCCACTCTCTGAATGTG  190
            ||||||||||| |||||||||||| ||||||||||||||| ||| ||||| |||||||||
Sbjct  61   CCTGTGTTCACCAAGGTTAATGAGCTGAGACCAGGAACCAGTGGTCACTCGCTGAATGTG  120

Query  191  AAAGTTGTCAACACGAAGATGGTGATGC--AGA-GAGGAGGAGGTCGTCCCATGGGTCCT  247
            |||||||||||||||||||||||| |||  ||| ||||||||||||||||||||||||||
Sbjct  121  AAAGTTGTCAACACGAAGATGGTGTTGCAGAGAGGAGGAGGAGGTCGTCCCATGGGTCCT  180

Query  248  CAGTCACGTCAGATGCGGATTGCCGAATGCTTAGTTGGTGATGAGACTGGAATCATAATC  307
            ||| ||||||||||||| ||||| ||||| ||||||||||| ||||||||||||||||||
Sbjct  181  CAGGCACGTCAGATGCGAATTGCGGAATGTTTAGTTGGTGACGAGACTGGAATCATAATC  240

Query  308  TTTACTGCAAGAAATGACCAAGTGGATATGATGAAAGAAGGCAGTGTAGTGACTCTGCGT  367
            ||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||| 
Sbjct  241  TTTACTGCAAGAAATGACCAAGTGGATTTGATGAAAGAGGGCAGTGTATTGACTCTGCGC  300

Query  368  AATGCGAAGATCGACATGTACAAGGGTTCTATGAGGCTTGCAGTTGATAGATGGGGACGT  427
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  301  AATGCGAAGATCGACATGTACAAGGGGTCTATGAGGCTTGCAGTTGATAGATGGGGACGT  360

Query  428  GTTGAAGTTGCAGAGGAGCCCACAGACATCACCGTGAAGGATGATAACAATCTTTCGCTG  487
            ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  361  GTTGACGTCGCAGAGGAGCCCACAGACATCACCGTGAAGGATGATAACAATCTTTCGCTA  420

Query  488  ATCGAGTATGAGCTTGTGAGCGTCGAAACTTGA  520
            ||||||||||||||||||||||||||| |||||
Sbjct  421  ATCGAGTATGAGCTTGTGAGCGTCGAAGCTTGA  453



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30879562770


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5