BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G10600.1
Length=1025
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919849 jgi|Araly1|919849|scaffold_101130.1 1168 0.0
> Ahg919849 jgi|Araly1|919849|scaffold_101130.1
Length=714
Score = 1168 bits (632), Expect = 0.0
Identities = 679/702 (97%), Gaps = 2/702 (0%)
Strand=Plus/Plus
Query 22 GAGCCGATGTTTCTGCTTCCATGGTAACGCTCTCGTCTCCATCTCCCTCGCTCTCTTGCG 81
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1 GAGCCGATGTTTCTGCTTCCATGGTAACGCTCTCGTCTCCATCTCCGTCGCTCTCTTGCG 60
Query 82 TAGAGAACGTGACATGTAAATCTTCTCACGTTTCTCGGGTTCTAATCTCCGGTACCGATA 141
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 61 TAGAGAACGTGACATGTAAATCTTCTCACGTTTCTCGGGTTATAATCTCCGGTCCCGATA 120
Query 142 ATATTAATCACGGTGAATCGTCGGAAG-CCAAAATACTGAGAGATGTTCATATCTCAGAA 200
| | ||||||||||||||| |||| || |||| |||||||||||||||||||||||||||
Sbjct 121 AGAATAATCACGGTGAATCATCGG-AGCCCAAGATACTGAGAGATGTTCATATCTCAGAA 179
Query 201 AGGTTATTGGAGGATTTCACTGAGCTTGCAAGAGAGAACACTGAGAAGGACCTCGAGACT 260
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 AGGTTGTTGGAGGATTTCACTGAGCTTGCAAGAGAGAACACTGAGAAGGACCTCGAGACT 239
Query 261 TGTGGGACTCTCGCTGCCTTTCTTGAAAGAGGAATTTTTTATGTAACCACTCTGATAATA 320
||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 240 TGTGGGACTCTCGCTGCTTTTCTTGAAAGAGGAGTTTTTTATGTAACCACTCTGATAATA 299
Query 321 CCTAAGCAAGAATCAACTTCTAATTCTTGTCAGGCTATGAATGAAGTGGAAGTGTTTTCC 380
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 300 CCTAAGCAAGAATCTACTTCCAATTCTTGTCAGGCTATGAATGAAGTGGAAGTGTTTTCC 359
Query 381 ATTCAAAACGAAAGAGAACTCTATCCCGTAGGATGGATTCATACTCATCCTTCTCAGGGT 440
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 ATTCAAAATGAAAGAGAACTCTATCCCGTAGGATGGATTCATACTCATCCTTCTCAGGGT 419
Query 441 TGTTTCATGTCATCTGTAGATCTGCATACACATTATTCGTATCAGGTAATGGTGCCAGAG 500
||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 420 TGTTTCATGTCATCTGTAGATTTGCATACACATTACTCGTATCAGGTAATGGTGCCAGAG 479
Query 501 GCTTTTGCAATCGTCGTAGCTCCAACTGATAGCTCTAAGAGTTACGGGATATTTAAGCTA 560
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 480 GCTTTTGCAATAGTCGTAGCTCCAACCGATAGCTCTAAGAGTTACGGGATATTTAAGCTA 539
Query 561 ACGGACCCTGGAGGAATGGAGGTACTGAGAGGCTGCTCAGAGACTGGATTCCACCCGCAC 620
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 540 ACGGACCCTGGAGGAATGGAGGTACTGAGAGGCTGCTCAGAGACTGGATTCCACCCACAC 599
Query 621 AAAGAACCAGAAGATGGGAACCCAGTTTATGAGCATTGCTCAAACGTCTACAAGAACTCG 680
||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 600 AAAGAACCAGAAGATGGGAACCCGGTTTATGAGCATTGCTTAAACGTCTACAAGAACTCC 659
Query 681 AACCTTAGGTTCGAGATTTTTGATCTACGTTAAGGTAACGAC 722
||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 AACCTTAGGTTCGAGATTTTTGATCTACGTTAAGGTAACGAC 701
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38122917000
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5