BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G10610.1
Length=1857
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471184 jgi|Araly1|471184|fgenesh2_kg.1__1138__AT1G10610.1 2333 0.0
> Ahg471184 jgi|Araly1|471184|fgenesh2_kg.1__1138__AT1G10610.1
Length=1762
Score = 2333 bits (1263), Expect = 0.0
Identities = 1461/1553 (94%), Gaps = 27/1553 (2%)
Strand=Plus/Plus
Query 249 gagtgagagagagag-agagagagagtgagatgatgatgatgagaggtggtgagagagtg 307
||||||||| ||||| | |||||||| |||||||||||||||||||||||||||||||||
Sbjct 198 GAGTGAGAGTGAGAGTA-AGAGAGAGAGAGATGATGATGATGAGAGGTGGTGAGAGAGTG 256
Query 308 aAGGAGTTTCTTCGACCCTTTGTCGATTCCAGAACTTGGGACTTATGTGTTATCTGGAAA 367
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 257 AAGGAGTTTCTTCGACCCTTTGTCGATTCCAGAACTTGGGACTTATGCGTTATCTGGAAA 316
Query 368 CTCGGTGATGATCCTTCTAGGTTTATTGAATGGGTGGGATGCTGCTGCAGTGGTTGTTAT 427
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 317 CTCGGTGATGATCCTTCTAGGTTTATTGAATGGGTAGGATGCTGCTGCAGTGGTTGTTAT 376
Query 428 ATTGATAAGAATATAAAGCTTGAAAACTCAGAAGAAGGAGGAACTGGGAGAAAAAAGAAG 487
||||||||||| || ||||||||||||||||||||| || ||||||||||| ||| |||
Sbjct 377 ATTGATAAGAACATTAAGCTTGAAAACTCAGAAGAA-GA--AACTGGGAGAAGAAACAAG 433
Query 488 GCTTCTTTCTGTAGAGATGACCACAACAAGCATCGTATAAGAACCTTAGCTTGTGAAGCG 547
|||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 434 GCTTCTTTCTGTAGAGATGAACACAACAAGCATCGTATAAGAACCCTAGCTTGTGAAGCT 493
Query 548 CTTTCTCGTTTTCCTCTCTTCATGCCTCTCTATCCCGGGATTCATGGAGAAGTAGTGATG 607
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 494 CTTTCTCATTTTCCTCTCTTCATGCCTCTCTATCCCGGGATTCATGGAGAAGTAGTGATG 553
Query 608 TCAAAATCTCCAAAGTGGTTGGTTAATTCAGGATCTAAAATGGAAATGTTCAGCACTCGT 667
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 554 TCAAAATCTCCAAAGTGGTTGGTTAATTCAGGATCTAAAATGGATATGTTCAGCACTCGG 613
Query 668 GTTCTTGTTCCTGTGAGTGATGGTCTCGTTGAGCTGTTC-GCTTTCGATATGAGACCGTT 726
||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||
Sbjct 614 GTTCTTGTTCCTGTGAGTGATGGTCTCGTTGAGCTGTTCTCCTTT-GATATGAAACCGTT 672
Query 727 TGATGAAAGCATGGTGCATTTGATCATGTCGCGTTGTACCACCTTCTTTGAACCATTCCC 786
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 673 TGATGAAAGCATGGTGCATTTGATCATGTCGCGTTGTACCACCTTCTTTGAACCATTACC 732
Query 787 TGAACAAAGGCTG-CAGTTCAGGATCATTCCCCGAGCAGAGGAATCTATGAGTAGCGGTG 845
||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 733 TGAGCAAAGGCTGCCA-TTCAGGATCATTCCCCGAGCAGAGGAATCTATGAGTAGCGGTG 791
Query 846 TGAATCTCAGCGTTGAGGGCGGCGGATCATCAAGTGTTTCCAATCCCTCCAGTGAAACTC 905
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 792 TGAATCTCAGCTTTGAGGGTGGCGGATCATCAAGTGTTTCCAATCCCTCCAGTGAAACTC 851
Query 906 AGAATCTTTTCGGCAATTACCCGAATGCTAGTTGTGTGGAAATTCTCAGGGAGGAACAAA 965
||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 852 AGAATCTTTTCGGCAGTTACCCGAATGCTCGTTGTGTAGAAATTCTCAGGGAGGAACAAG 911
Query 966 CACCGTGTTTGATAATGAACAAGGAAAAGGAT-GTTGTGGTGCAAAATGCCAACGATTCC 1024
| || ||| || |||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 912 CGCCATGTATGGTAATGAACAAGGAAAAGGATGGTT-TGGTGCAAAATGCCAACGATTCC 970
Query 1025 AAAGCTAATAAGAAGCTGCTTCCTACGGAAAACTTCAAATCAAAGAACCTTCATTCAGAG 1084
|| ||||||||| || ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 971 AAGGCTAATAAG-AG--GCTTCCTGCGGAAAACTTCAAATCAAAGAACCTTCATTCAGAG 1027
Query 1085 AGGAAAAGAAGAGAGAGAATTAATCAGGCCATGTATGGTCTAAGAGCCGTAGTCCCTAAA 1144
|||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1028 AGGAAAAGAAGAGATAAAATTAATCAGGCCATGTATGGTCTAAGAGCAGTAGTCCCTAAA 1087
Query 1145 ATCACAAAGTTGAACAAAATTGGAATTTTCAGTGATGCTGTTGATTACATCAATGAACTG 1204
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1088 ATCACAAAGTTGAACAAAATTGGAATTTTTAGTGATGCGGTTGATTACATCAATGAACTG 1147
Query 1205 CTAGTGGAGAAGCAGAAACTTGAAGATGAGCTTAAAGGAATCAATGAGATGGAATGCAAA 1264
|| | ||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 1148 CTGGCGGAGAAGCAGAAACTTGAAGATGAGCTTAAAGGAATCGACGAGATGGAATGCAAA 1207
Query 1265 GAAATCGCTGCAGAGGAACAATCTGCAATAGCTGATCCAGAAGCTG-AAAGAGTTTCCTC 1323
||||| |||||||||||||||||||||||||||||||||| ||||| |||| ||||||||
Sbjct 1208 GAAATTGCTGCAGAGGAACAATCTGCAATAGCTGATCCAGGAGCTGAAAAG-GTTTCCTC 1266
Query 1324 TAAAAGCAACAAGAGAGTGAAGAAAAACGAGGTGAAAATTGAAGTCCACGAGACTGGTGA 1383
|||| |||||||| ||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 1267 GAAAATCAACAAGAAAGTGAAGAAAAACGAGGTGAATCTTGAAGTCCACGAGATTGGTGA 1326
Query 1384 GCGAGATTTCTTGATTCGGGTTGTGCAGGAACATAAACAAGATGGATTCAAGAGGTTGAT 1443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1327 GCGAGATTTCTTGATTCGGGTTGTGCAGGAACATAAACAAGATGGATTCAAGAGGTTGAT 1386
Query 1444 AGAAGCTGTAGATTTATGTGAACTTGAGATCATTGACGTCAATTTCACCAGACTCGATCT 1503
||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||
Sbjct 1387 AGAAGCTGTAGATTTATGTGAACTTGAGATCATCGACGTTAATTTCACCAGACTTGATCT 1446
Query 1504 CACAGTCATGACCGTTCTCAATGTCAAGGCGAACAAAGACGGGATTGCATGTGGAATAT- 1562
||||||| ||||| |||||||||||||||||||||||||||||||| ||| |||||| |
Sbjct 1447 CACAGTCCTGACCATTCTCAATGTCAAGGCGAACAAAGACGGGATTACATCTGGAAT-TC 1505
Query 1563 TGAGAGATTTACTGCTCAAGATGATGATAACTTCAATATGAAAACTCAGTAAAACAGAGT 1622
||| |||||| |||||||||||||| ||||||||||||||||| || ||||||||||||
Sbjct 1506 TGAAAGATTTGCTGCTCAAGATGATTATAACTTCAATATGAAAG-TCGGTAAAACAGAGT 1564
Query 1623 ACATAACCTCAAAA-----GGTCAAATGTTTTGTTTGCTTCAGTCACAAGTTACTGCTAG 1677
|||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 1565 ACATAACC-CAAAAAAAAAGGTCAAATGTTTTGTTTGCTTCAGTCACAAGTTACTACTAG 1623
Query 1678 AGATATGATTTCTCACAAGCTTTTAGGTGACAG-TTTACATGTTTGAAACTATACATTCT 1736
|||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||
Sbjct 1624 AGATATGATTTCTCACAAGCTTTTTGGTGACAAATTTACATGTT-GAAACTATACATTCT 1682
Query 1737 TCTGGTTTGTCATTGGGTTTTCATTAAGATCTTTCACAAATATAATTCTAAAG 1789
|||||||| |||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1683 TCTGGTTTATCATCGGATTTTCATTAAGATCTTTCACAAATATAATTCTAAAG 1735
Score = 324 bits (175), Expect = 2e-87
Identities = 249/280 (89%), Gaps = 23/280 (8%)
Strand=Plus/Plus
Query 1 CTCTGGGTTTTAATTCAAAAAGTGAAGTTGGTTACCATTGTCTTGTACGATCGTATATTC 60
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1 CTCTGGGTTTTAATTCAAAAAGTGGAGTTGGTTACCATTGTCTTGTACGATCGTATATTC 60
Query 61 CCGATATGATTTGTTTTGACAGAGCAACTGCTTTGTATATATATGCCAAATAtctctctc 120
|||||||||||||||||||||||||||||||||||||||||| |||||| | | ||||
Sbjct 61 CCGATATGATTTGTTTTGACAGAGCAACTGCTTTGTATATAT--GCCAAA-A-CA-TCTC 115
Query 121 tctctccctctctcCTTGCATCAATTTATAAGTAAGACCAAAAGAGATCACCAAA-ACTC 179
|||||| || || | |||||||||||||||||||||||||||||||||| ||| | ||
Sbjct 116 TCTCTC--TC-CT--T-GCATCAATTTATAAGTAAGACCAAAAGAGATCAC-AAAGATTC 168
Query 180 AGGCTTCTTGTTTGGCTTTTCTTATTGTTGATTgagagagtgagagtaagagagagagag 239
|||||| ||||||||||||||||||| |||| |||||| ||||||||||||||||||||
Sbjct 169 AGGCTTTTTGTTTGGCTTTTCTTATTCTTGAGTGAGAG--TGAGAGTAAGAGAGAGAGAG 226
Query 240 a-ga-ga-ga-gagag-tgagagagagagagagagagagt 274
| || || || ||||| || | ||||||| || || ||||
Sbjct 227 ATGATGATGATGAGAGGTG-GTGAGAGAGTGA-AG-GAGT 263
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69743238595
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5