BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G10620.1
Length=2157
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919851 jgi|Araly1|919851|scaffold_101132.1 3435 0.0
> Ahg919851 jgi|Araly1|919851|scaffold_101132.1
Length=2200
Score = 3435 bits (1860), Expect = 0.0
Identities = 2069/2167 (95%), Gaps = 25/2167 (1%)
Strand=Plus/Plus
Query 1 ATGGACAAAGTCCAGCAACAAGCAGATTTATTCGGTAAGACGATATCTCCGTTTGTAGCT 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 21 ATGGACAAAGTCCAGCAACAAGCAGATTTAATCGGTAAGACGATATCTCCGTTTGTAGCT 80
Query 61 TCACAACCAACAAATGTCGGAGGATTCACTGATCAGAAAATCATTGGCGGTTCTGAGACG 120
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 81 TCACAACCAACAAATGTCGGAGGATTAACTGATCAGAAAATCATCGGCGGTTCTGAGACG 140
Query 121 ACACAACCTCCAGCCACCTCACCTCCTTCTCCTCCATCCCCTGACA---------CACAA 171
||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 141 ACACAACCTCCAGCCACCTCACCTCCTTCTCCTCCATCCCCCGACAGTGGCGGCGCACAA 200
Query 172 ACATCTCCCCCGCCGGCAACAGCTGCTCAACCACCACCGAATCAGCCTCCTAATACAAct 231
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 201 GCATCTCCCCCGCCGGCAACAGCTGCTCAACCACCACCGAATCAGCCTCCTAATACAACT 260
Query 232 ccacctccaacgcctccttcttcccctccaccttctataactccacctccttcacctcct 291
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 261 CCACCTCCAACACCTCCTTCTTCCCCTCCACCTTCTATAACTCCACCTCCTTCACCTCCT 320
Query 292 cagcctcaacctccGCCTCAATCCACCCCAACTGGAGATTCTCCGGTGGTGATTCCTTTT 351
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 321 CAGCCTCAACCTCCGCCTCAATCCACCCCAACTGGAGATTCTCCGGTGGTGGTTCCTTTT 380
Query 352 CCAAAGCCTCAATTACCTCCTCCTTCTCTTTTTCCTCCCCCCTCCTTAGTTAATCAGCTA 411
|||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||
Sbjct 381 CCAAAGCCTCAATTACCTCCTCCTTCGCTTCTTCCTCCTCCCTCCTTAGTTAATCAGCTA 440
Query 412 CCGGATCCAAG-ACCTAATGATAATAACATACTTGAACCCATCAACAACCCTATTTCTCT 470
||||||||||| ||| |||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 441 CCGGATCCAAGAACC-AATGATGATAACATACTTCAACCCATCAACAACCCTATTTCTCC 499
Query 471 TCCGTCTCCGCCTTCTACTCCCTTTTCGCCACCGTCTCA-GGAAAATTCCGGCAGTCAAG 529
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 500 TCCGTCTCCGCCTTCTACTCCCTTTTCGCCACCGTCT-ACGGAAAATTCCGGCAGTCAAG 558
Query 530 GGTCTCCTCCGTTGTCATCTTTATTGCCTCCGATGCTTCCGCTAAACCCTAATTCTCCTG 589
|||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||
Sbjct 559 GGTCTCCTCCGTTGTCATCTTTATTGCCTCCGTTGCTTCCCCTAAGCCCTAATTCTCCTG 618
Query 590 GAAACCCTTTACAGCCCTTGGATTCACCTCTGGGAGGAGAATCAAATCGTGTACCCTCGT 649
||||||||| ||| |||||||| ||||| | |||||||| ||||||||||||||||||||
Sbjct 619 GAAACCCTTCACAACCCTTGGACTCACCCCCGGGAGGAGGATCAAATCGTGTACCCTCGT 678
Query 650 CGTCTTCTTCCCCATCTCCTCCTTCCCTCTCCGGATCAAATAACCATTCCGGAGGCTCTA 709
||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 679 CGTCTTCTTCCCCGTCTCCTCCTTCCCTCTCCGGCTCCAATAACCATTCCGGAGGCTCTA 738
Query 710 ATAGACATAATGCCAATAGTAACGGGGATGGTGGTACTAGCCAACAAAGTAATGAGTCTA 769
|||||||||||||||||| |||||| ||| ||| | | |||||||||||||||||||||
Sbjct 739 ATAGACATAATGCCAATAATAACGGAAATGATGGCAATGGCCAACAAAGTAATGAGTCTA 798
Query 770 ATTACACCGAGAAGACAGTGATTGGTATTGGGATCGCAGGTGTGTTGGTC-AT-ATTGTT 827
||||||||||||||||| |||||||||||||||||||||||||||||| | | ||| ||
Sbjct 799 ATTACACCGAGAAGACAATGATTGGTATTGGGATCGCAGGTGTGTTGG-CTGTAATT-TT 856
Query 828 CATCGCTGGCGTTTTCTTTGTTAGGAGGAAACAAAAGAAAGGCTCTTCTTCCCCGCGCTC 887
|||||||| ||||||||| ||||||||||||||||||||||| |||||||| ||||||||
Sbjct 857 CATCGCTGCCGTTTTCTTCGTTAGGAGGAAACAAAAGAAAGGTTCTTCTTCTCCGCGCTC 916
Query 888 TAACCAGTATTTGCCACCGGCTAATGTCTCTGTAAATACAGAAGGATTCATCCATTACAG 947
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 917 TAACCAGTATTTGCCACCGGCTAATGTCTCTGTAAATACAGAGGGATTCATCCATTACAG 976
Query 948 ACAGAAACCCGGGAATGGGAACAGCTCGGCGCAGAACTCTTCACCGGATACTAACAGTCT 1007
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 977 ACAGAAACCCGGAAATGGGAACAGCTCGGCGCAGAACTCTTCACCGGATACTAACAGTCT 1036
Query 1008 TGGGAACCCAAAACATGGTAGAGGAACCCCTGACTCCGCAGTAATAGGGACTTCAAAGAT 1067
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 TGGGAACCCAAAACATGGTAGAGGAACCCCTGACTCCGCAGTAATAGGGACTTCAAAGAT 1096
Query 1068 CCATTTCACCTACGAAGAGCTAAGTCAGATAACTGAAGGATTTTGCAAGAGCTTTGTGGT 1127
|| ||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||
Sbjct 1097 CCTTTTCACCTACGAAGAGCTAAGCCAGATAACGGAAGGATTTTGCAAAAGCTTTGTGGT 1156
Query 1128 AGGAGAAGGCGGGTTCGGGTGTGTCTACAAGGGCATCCTATTCGAGGGAAAGCCAGTAGC 1187
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1157 AGGAGAAGGCGGGTTCGGGTGTGTTTACAAGGGCATCCTTTTCGAGGGAAAGCCAGTAGC 1216
Query 1188 GATCAAACAGCTGAAGTCGGTCAGCGCAGAAGGATATAGAGAGTTCAAAGCTGAAGTAGA 1247
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1217 GATCAAGCAGCTAAAGTCGGTCAGCGCAGAAGGATATAGAGAGTTCAAAGCTGAAGTAGA 1276
Query 1248 GATCATAAGCAGAGTGCATCATAGGCACTTGGTGTCTCTTGTGGGTTATTGCATCTCTGA 1307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1277 GATCATAAGCAGAGTGCATCATAGGCACTTGGTGTCTCTTGTGGGTTATTGCATCTCTGA 1336
Query 1308 ACAACACAGATTCCTCATCTATGAGTTTGTCCCCAACAATACTTTGGATTACCATTTACA 1367
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1337 ACAACACAGATTTCTCATCTATGAGTTTGTCCCCAACAATACTTTGGATTACCATTTGCA 1396
Query 1368 TGGCAAAAACTTACCGGTTTTGGAATGGAGTAGAAGAGTCAGGATTGCAATAGGCGCAGC 1427
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1397 TGGCAAAAACTTACCGGTTTTGGAATGGACTAGAAGAGTCAGGATTGCAATAGGCGCAGC 1456
Query 1428 CAAAGGACTTGCTTATCTACATGAAGATTGCCACCCAAAGATTATCCATAGGGACATCAA 1487
|||||||||||||||||||||||||||||| || || |||||||||||||||||||||||
Sbjct 1457 CAAAGGACTTGCTTATCTACATGAAGATTGTCATCCGAAGATTATCCATAGGGACATCAA 1516
Query 1488 ATCGTCAAACATTCTGCTGGATGATGAATTCGAAGCTCAGGTTGCAGATTTCGGACTCGC 1547
||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1517 ATCGTCAAATATTCTGTTGGATGATGAATTCGAAGCTCAGGTTGCAGATTTTGGACTCGC 1576
Query 1548 TAGACTGAACGATACTGCACAGTCACACATATCAACGCGTGTCATGGGCACATTCGGGTA 1607
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1577 AAGACTGAACGATACTGCACAGTCACACATATCAACGCGTGTCATGGGCACATTTGGGTA 1636
Query 1608 TCTAGCACCAGAATATGCGTCAAGCGGAAAGCTAACGGATAGATCAGATGTGTTTTCATT 1667
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1637 TTTAGCACCAGAATATGCGTCAAGCGGAAAGCTAACGGATAGATCAGATGTGTTTTCATT 1696
Query 1668 TGGAGTTGTGCTTCTCGAACTCATCACCGGTCGCAAACCTGTTGATACCTCTCAACCTTT 1727
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1697 TGGAGTTGTGCTTCTCGAACTCATCACTGGTCGCAAACCTGTTGATACCTCTCAACCTTT 1756
Query 1728 GGGTGAAGAAAGTCTCGTCGAATGGGCACGTCCAAGGCTAATCGAGGCCATTGAAAAAGG 1787
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1757 GGGTGAAGAAAGTCTCGTCGAATGGGCACGTCCACGGCTAATCGAGGCCATTGAAAAAGG 1816
Query 1788 TGACATCAGCGAAGTAGTGGATCCACGGCTAGAGAATGATTACGTCGAAAGTGAAGTCTA 1847
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 1817 TGACATCAGCGAAGTAGTGGATCCACGGCTAGAAAATGATTACGTCGAAGGTGAAGTCTA 1876
Query 1848 TAAAATGATTGAAACGGCAGCGTCTTGTGTTAGACATTCCGCT-TTAAAACGACCTCGTA 1906
|| |||||| ||||||||||||||||||||||||||||| ||| ||||| ||||||||||
Sbjct 1877 TAGAATGATCGAAACGGCAGCGTCTTGTGTTAGACATTCAGCTCTTAAA-CGACCTCGTA 1935
Query 1907 TGGTTCAGGTTGTTAGAGCTCTGGACACGAGAGATGACTTGTCGGATCTGACAAACGGAG 1966
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1936 TGGTTCAGGTTGTAAGAGCTCTGGACACGAGAGATGACTTGTCGGATCTGACAAACGGAG 1995
Query 1967 TTAAAGTGGGTCAAAGTAGGGTCTACGACTCCGGTCAATACAGTAATGAGATTCGAATTT 2026
|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 1996 TTAAAGTGGGTCAAAGTACGGTCTACGACTCGGGTCAATACAGTAATGAGATTCGAATTT 2055
Query 2027 TCAGACGAGCCTCTGAAGATTCCTCGGATCTTGGTACTAATACTGGCTACTACCCTAGCC 2086
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2056 TCAGACGAGCCTCTGAAGATTCCTCGGATCTTGGTACTAATACTGGCTACTACCCAAGCC 2115
Query 2087 AAGACTACGCCACTAGCCATGAATATGAATCTGAGAGCCGAGCCTTCAACACAAGTCACC 2146
|||||||||| || |||||||||| ||||||||||||||||||||||||||||||
Sbjct 2116 AAGACTACGCTACGAGCCATGAAT------CTGAGAGCCGAGCCTTCAACACAAGTCACC 2169
Query 2147 GGAACCA 2153
|||||||
Sbjct 2170 GGAACCA 2176
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81170312095
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5