BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G10630.1
Length=1043
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919852 jgi|Araly1|919852|scaffold_101133.1 939 0.0
Ahg472612 jgi|Araly1|472612|fgenesh2_kg.1__2566__AT1G23490.1 614 5e-175
Ahg476172 jgi|Araly1|476172|fgenesh2_kg.2__1302__AT1G70490.1 604 3e-172
Ahg925013 jgi|Araly1|925013|scaffold_200574.1 159 3e-38
> Ahg919852 jgi|Araly1|919852|scaffold_101133.1
Length=586
Score = 939 bits (508), Expect = 0.0
Identities = 561/587 (96%), Gaps = 2/587 (0%)
Strand=Plus/Plus
Query 84 GATCAACAGTTAAAAGGAAAATGGGGCTTTCATTTGCAAAGCTTTTTAGCCGGCTTTTTG 143
||||||| ||| || ||| ||||||||||||||||||||||||||| ||||||||||| |
Sbjct 1 GATCAACGGTTCAACGGACAATGGGGCTTTCATTTGCAAAGCTTTTCAGCCGGCTTTTCG 60
Query 144 CCAAGAAGGAGATGCGAATCCTTATGGTTGGTCTTGATGCTGCTGGTAAGACCACCATTT 203
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 61 CCAAGAAGGAGATGCGAATCCTTATGGTGGGTCTTGATGCTGCTGGTAAGACCACCATTT 120
Query 204 TGTACAAGCTCAAGCTTGGTGAGATTGTCACCACCATTCCCACCATCGGGTTTAATGTGG 263
|||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||
Sbjct 121 TGTACAAGCTCAAGCTTGGTGAGATTGTTACCACCATTCCTACCATTGGGTTTAATGTGG 180
Query 264 AGACGGTTGAGTACAAGAACATCAGCTTCACGGTTTGGGATGTCGGGGGTCAGGACAAGA 323
|||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||
Sbjct 181 AGACGGTTGAGTACAAAAACATCAGCTTCACCGTCTGGGATGTCGGGGGTCAGGACAAGA 240
Query 324 TCCGTCCCTTGTGGAGACACTACTTCCAAAACACTCAAGGTCTGATATTT-GTTGTTGAT 382
|||||||||||||||| ||||||||||||||||| ||||||||||| ||| || ||||||
Sbjct 241 TCCGTCCCTTGTGGAGGCACTACTTCCAAAACACACAAGGTCTGAT-TTTCGTGGTTGAT 299
Query 383 AGCAATGACAGAGACCGTGTTGTTGAAGCCAGAGATGAACTTCACAGGATGTTGAATGAA 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 AGCAATGACAGAGACCGTGTTGTTGAAGCCAGAGATGAACTTCACAGGATGTTGAATGAA 359
Query 443 GATGAGCTTCGGGATGCAGTATTGCTTGTGTTTGCCAACAAGCAGGATCTTCCAAACGCT 502
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 360 GATGAGCTACGGGATGCAGTATTGCTTGTGTTTGCCAACAAGCAAGATCTTCCAAATGCA 419
Query 503 ATGAATGCTGCTGAGATTACTGATAAGCTTGGCCTTCACTCACTCCGGCAACGCCACTGG 562
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 ATGAATGCTGCTGAGATAACTGATAAGCTTGGCCTTCACTCACTCCGGCAACGCCACTGG 479
Query 563 TACATCCAAAGCACATGCGCAACTAGCGGTGAAGGGCTCTATGAAGGTCTGGATTGGCTT 622
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TACATACAAAGCACATGCGCAACTAGCGGTGAAGGGCTCTATGAAGGTCTGGATTGGCTT 539
Query 623 TCCAACAACATTGCTAGCAAAGCTTGAGGTTATCTCGACCAGATAGT 669
|||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 540 TCCAACAACATTGCTAACAAAGCTTGAGGTTATCTCGACCAGAGAGT 586
> Ahg472612 jgi|Araly1|472612|fgenesh2_kg.1__2566__AT1G23490.1
Length=931
Score = 614 bits (332), Expect = 5e-175
Identities = 469/535 (88%), Gaps = 9/535 (2%)
Strand=Plus/Plus
Query 107 GGGCTT-TCATTTGCAAAGCTTTTTAGCCGGCTTTTTGCCAAGAAGGAGATGCGAATCCT 165
||| || ||||| || |||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 90 GGGTTTGTCATTCGCCAAGCTTTTTAGCCGGCTTTTTGCCAAGAGGGAGATGCGAATTCT 149
Query 166 TATGGTTGGTCTTGATGCTGCTGGTAAGACCACCATTTTGTACAAGCTCAAGCTTGGTGA 225
||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 150 CATGGTTGGTCTTGATGCTGCTGGTAAGACCACCATTTTGTACAAGCTCAAGCTCGGAGA 209
Query 226 GATTGTCACCACCATTCCCACCATCGGGTTTAATGTGGAGACGGTTGAGTACAAGAACAT 285
|||||| ||||||||||| || || ||||| |||||||| || || ||||||||||||||
Sbjct 210 GATTGTAACCACCATTCCTACTATTGGGTTCAATGTGGAAACTGTGGAGTACAAGAACAT 269
Query 286 CAGCTTCACGGTTTGGGATGTCGGGGGTCAGGACAAGATCCGTCCCTTGTGGAGACACTA 345
||| ||||| || ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 270 CAGTTTCACAGTGTGGGATGTCGGGGGTCAGGACAAGATCCGTCCCTTGTGGAGGCACTA 329
Query 346 CTTCCAAAACACTCAAGGTCTGATATTTGTTGTTGATAGCAATGACAGAGACCGTGTTGT 405
|||||| |||||||||||||| || ||||| || || |||||||||||||||||||||||
Sbjct 330 CTTCCAGAACACTCAAGGTCTTATCTTTGTGGTGGACAGCAATGACAGAGACCGTGTTGT 389
Query 406 TGAAGCCAGAGATGAACTT-CACAGGATGTTGAATGAAGATGAGCTTCGGGATGCAGTAT 464
||| || ||||||||| || ||| | ||| ||||||| |||||||| || ||||| || |
Sbjct 390 TGAGGCTAGAGATGAA-TTGCACCGAATGCTGAATGAGGATGAGCTGCGTGATGCTGT-T 447
Query 465 -TGCTTGTGTTTGCCAACAAGCAGGATCTTCCAAACGCTATGAATGCTGCTGAGATTACT 523
|||| |||||||| |||||||||||||| ||||| ||||||||||| ||||| || |||
Sbjct 448 CTGCTCGTGTTTGCTAACAAGCAGGATCTCCCAAATGCTATGAATGCAGCTGAAATCACT 507
Query 524 GATAAGCTTGGCCTTCACTCACTCCGGCAACGCCACTGGTACATCCAAAGCACATGCGCA 583
||||||||||| || ||||| ||||| || || |||||||||||||| |||||||| ||
Sbjct 508 GATAAGCTTGGTCTCCACTCTCTCCGTCAGCGTCACTGGTACATCCAGAGCACATGTGCC 567
Query 584 ACTAGC-GGTGAAGGGCTCTATGAAGGTCTGGATTGGCTT-TCCAACAACATTGC 636
||| | ||||| ||||| || |||||||| || ||| || ||||||||||||||
Sbjct 568 ACTT-CAGGTGAGGGGCTTTACGAAGGTCTTGACTGG-TTGTCCAACAACATTGC 620
> Ahg476172 jgi|Araly1|476172|fgenesh2_kg.2__1302__AT1G70490.1
Length=900
Score = 604 bits (327), Expect = 3e-172
Identities = 472/542 (87%), Gaps = 10/542 (2%)
Strand=Plus/Plus
Query 97 AAGGAAAATGGGGCTTTCA-TTT-GCAAAGCTTTTTAGCCGGCTTTTTGCCAAGAAGGAG 154
||| ||||||||| || | ||| || ||||| |||||| ||||||||||||||||||||
Sbjct 106 AAGAAAAATGGGG--TTGAGTTTCGCCAAGCTGTTTAGCAGGCTTTTTGCCAAGAAGGAG 163
Query 155 ATGCGAATCCTTATGGTTGGTCTTGATGCTGCTGGTAAGACCACCATTTTGTACAAGCTC 214
|||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 164 ATGCGAATTCTGATGGTTGGTCTTGATGCTGCTGGTAAGACCACTATTTTGTACAAGCTC 223
Query 215 AAGCTTGGTGAGATTGTCACCACCATTCCC-ACCATCGGGTTT-AATGTGGAGACGGTTG 272
||||| || |||||||||||||||| |||| || || ||||| |||||||| || || |
Sbjct 224 AAGCTCGGAGAGATTGTCACCACCA-TCCCTACTAT-TGGTTTCAATGTGGAAACTGTGG 281
Query 273 AGTACAAGAACATCAGCTTCACGGTTTGGGATGTCGGGGGTCAGGACAAGATCCGTCCCT 332
| |||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||
Sbjct 282 AATACAAGAACATCAGTTTCACCGTGTGGGATGTCGGGGGTCAGGACAAGATCCGTCCCT 341
Query 333 TGTGGAGACACTACTTCCAAAACACTCAAGGTCTGATATTTGTTGTTGATAGCAATGACA 392
||||||||||||||||||| |||||||| ||||| || ||||| || |||||||| ||||
Sbjct 342 TGTGGAGACACTACTTCCAGAACACTCAGGGTCTTATCTTTGTCGTGGATAGCAACGACA 401
Query 393 GAGACCGTGTTGTTGAAGCCAGAGATGAACTTCACAGGATGTTGAATGAAGATGAGCTTC 452
||||| | |||||||| || |||||||| || ||||||||| ||||||| || ||||| |
Sbjct 402 GAGACAGAGTTGTTGAGGCTAGAGATGAGCTCCACAGGATGCTGAATGAGGACGAGCTGC 461
Query 453 GGGATGCAGTATTGCTTGTGTTTGCCAACAAGCAGGATCTTCCAAACGCTATGAATGCTG 512
| ||||| || ||||||||||||||||||||||| ||||||||||| || ||||| || |
Sbjct 462 GTGATGCTGTGTTGCTTGTGTTTGCCAACAAGCAAGATCTTCCAAATGCGATGAACGCCG 521
Query 513 CTGAGATTACTGATAAGCTTGGCCTTCACTCACTCCGGCAACGCCACTGGTACATCCAAA 572
|||| || || ||||||||||||||||| || ||||| || || || ||||||||||| |
Sbjct 522 CTGAAATCACAGATAAGCTTGGCCTTCATTCCCTCCGTCAGCGTCATTGGTACATCCAGA 581
Query 573 GCACATGCGCAACTAGC-GGTGAAGGGCTCTATGAAGGTCTGGATTGGCTTTCCAACAAC 631
||||||| || || | | ||||||||||| |||||||||||||| ||||| |||||||||
Sbjct 582 GCACATGTGCCAC-ATCAGGTGAAGGGCTTTATGAAGGTCTGGACTGGCTCTCCAACAAC 640
Query 632 AT 633
||
Sbjct 641 AT 642
> Ahg925013 jgi|Araly1|925013|scaffold_200574.1
Length=436
Score = 159 bits (86), Expect = 3e-38
Identities = 112/123 (91%), Gaps = 8/123 (7%)
Strand=Plus/Plus
Query 135 GGCTTTTTGCCAAGAAGGAGATGCGAATCCTTA----TGGTTGGTCTTGATGCTGCTGGT 190
||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 24 GGCTTTTTGCCAAGAAGGAGATGCGCATCCTTATGGTTGGTTGGTCTTGATGCTGCTGGT 83
Query 191 AAGACCACCATTTTGTACAAGCTCAAGCTTGGTGAGAT---T-GTCACCACCATTCCCAC 246
||||||||||||||||||||||||||||| |||||||| | ||||||||||| |||||
Sbjct 84 AAGACCACCATTTTGTACAAGCTCAAGCTCGGTGAGATCGATTGTCACCACCATCCCCAC 143
Query 247 CAT 249
|||
Sbjct 144 CAT 146
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38809129506
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5