BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G10640.1
Length=1793
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471186 jgi|Araly1|471186|fgenesh2_kg.1__1140__AT1G10640.1 1999 0.0
Ahg924996 jgi|Araly1|924996|scaffold_200557.1 926 0.0
Ahg919854 jgi|Araly1|919854|scaffold_101135.1 676 0.0
> Ahg471186 jgi|Araly1|471186|fgenesh2_kg.1__1140__AT1G10640.1
Length=1303
Score = 1999 bits (1082), Expect = 0.0
Identities = 1234/1307 (94%), Gaps = 12/1307 (1%)
Strand=Plus/Plus
Query 495 TGAAGCGGCTTGGGTAGCAGCTTGCAAAATCGAAGCATCAG-TGATGCTTGTACCGCCTG 553
|||||||||||||| ||| |||||||||||||||||||| | ||||||||||||||||||
Sbjct 1 TGAAGCGGCTTGGGCAGCGGCTTGCAAAATCGAAGCATC-GATGATGCTTGTACCGCCTG 59
Query 554 AATACACTTACCTTGTTGGACCGATCTCATTCTCTGGTCCTTATTGTCAAGCTAACATTG 613
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 AATACACTTACCTTGTTGGACCGATCTCATTCTCTGGTCCTTATTGTCAAGCTAACATTG 119
Query 614 TGTTCCAGCTTGATGGTACGATTATAGCTCCAACGGATTCAAAGACATGGGGAAAAGGGT 673
|||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 120 TGTTTCAGCTTGATGGTACAATCATAGCTCCAACGGATTCAAAGACATGGGGAAAAGGGT 179
Query 674 TAATGTGGTGGATTGATTTTACAAAGCTGAAAGGAATTAAAGTACAAGGGAAAGGTGTTA 733
||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
Sbjct 180 TAATGTGGTGGATTGATTTCACAAAGCTGAAAGGAATTAAAGTGCAAGGGAAAGGTGTGA 239
Query 734 TTGATGGAAGAGGCTCTGGTTGGTGGCAACAAGATTCTCCTTTCATTGATAGTGATACCA 793
||||||||||||||||||||||||||||||||||| |||||||| |||| |||| ||||
Sbjct 240 TTGATGGAAGAGGCTCTGGTTGGTGGCAACAAGATGATCCTTTCAGTGATGGTGAAACCA 299
Query 794 AACTCATCGTCCCTTTGAACAATTCTGCTAACCAAAACCCTCCTATGCCGATCAGAAGTG 853
|||||||| |||||||||||||||||| | ||||||||||||| |||||||| |||||||
Sbjct 300 AACTCATCATCCCTTTGAACAATTCTGTTCACCAAAACCCTCCAATGCCGATAAGAAGTG 359
Query 854 AGCTTGATGAGAGAATGCCAAGCATTAAACCAACGGCATTGAGATTCTCTGGGAGTTTTG 913
|||| |||| |||||||||||| | |||||||||||||||||||||||| |||||||| |
Sbjct 360 AGCTAGATGGGAGAATGCCAAGTACTAAACCAACGGCATTGAGATTCTCCGGGAGTTTAG 419
Query 914 GTGTGGAAGTGACGGGTATAACGATACAAAACAGTCCTCAGTGTCACCTCAAATTCGACG 973
| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 420 GCGTGGAAGTGACGGGTATAACGATCCAAAACAGTCCTCAGTGTCATCTCAAATTCGACG 479
Query 974 ACTGCGTAGGGGTTGTGGTGCATGACATAGCCGTTTCTTCACCTGGTGACAGTCCAAACA 1033
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 ACTGCTTAGGGGTTGTGGTGCATGACATAGCCGTTTCTTCACCTGGTGACAGTCCAAACA 539
Query 1034 CTGATGGAATTCACCTCCAGAACACCAAAGATGTCCTCATTCACAGCACTACTCTCGCTT 1093
|||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 540 CTGATGGAATCCACCTCCAGAACACCAGAGATGTCCTCATTCACAGCACTACTCTTGCTT 599
Query 1094 GCGGAGATGACTGTATCTCGATCCAAACGGGTTGCTCGAACGTGTTTGTGCACAATGTGA 1153
|||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 600 GCGGAGATGATTGTATCTCGATCCAAACGGGTTGCTCGAATGTGTATGTGCACAATGTGA 659
Query 1154 ACTGTGGACCGGGTCACGGGATCAGCATTGGTAGTCTCGGCAAAGAGGGTACAAAAGCCT 1213
||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 660 ACTGTGGACCGGGGCACGGGATCAGCATTGGTAGTCTCGGCAAAGAAGGCACAAAAGCCT 719
Query 1214 GCGTCTCGAACATAACAGTACGAGACGTAGCTATGCACAACACAATGACAGGTGTCCGAA 1273
||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| | |
Sbjct 720 GCGTCTCCAACATAACAGTGCGAGACGTAGCTATGCACAACACAATGACAGGTGTCAGGA 779
Query 1274 TCAAGACATGGCAAGGAGGAGTAGGATCAGTGAAAGGGATAATCTTCTCAAACATTCAGC 1333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TCAAGACATGGCAAGGAGGAGTAGGATCAGTGAAAGGGATAATCTTCTCAAACATTCAGC 839
Query 1334 TCAACCAAGTACAAATTCCAATAACGATAAACCAATTCTACTGTGACCATAGCAAATGCA 1393
||||| |||| || |||||||||| |||| ||||||||||||||||||| ||||||||||
Sbjct 840 TCAACGAAGTCCAGATTCCAATAATGATAGACCAATTCTACTGTGACCACAGCAAATGCA 899
Query 1394 AGAACCAAACATCAGCAGTAGCAGTGGAAGGAGTGACTTACGAGAGGATAAAAGGAACTT 1453
||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 900 AGAACCAGACATCAGCAGTTGCAGTGGAAGGAGTGACTTACGAGAGGATAAAAGGAACCT 959
Query 1454 ATACCGTGAAACCGGTGCATTTCGCTTGTAGCGATAACTTCCCGTGTGTAGATGTGCAGT 1513
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 ACACCGTGAAACCGGTGCATTTCGCTTGTAGCGATAACTTCCCGTGTGTAGATGTGCAGT 1019
Query 1514 TATCGTCGATAGAGCTTAAACCGGTTCAAGAAAAGTATCGAATGTATGATGCTTATTGCT 1573
|||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 1020 TATCATCGATAGAGCTTAAACCGGTTCAAGAAAAGTATCGAATGTCTGATGCTTATTGTT 1079
Query 1574 GGCAGACATTTGGTGAGCTCAACACTCCTACTCTTCCTCCCATTGATTGTTTGAAGATTG 1633
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1080 GGCAGACATTTGGTGAGCTCAACACTCCTACTCTTCCTCCCATTGATTGTTTGCAGATTG 1139
Query 1634 GGAAGCCCCCGA-GAAACAAAGTTCAGTCCGATCACGATGTGTGTTAACGGATTTTTCGC 1692
|||||||||| | ||||||||||||||||||||||||||||||||| | ||||| |||
Sbjct 1140 GGAAGCCCCC-ACGAAACAAAGTTCAGTCCGATCACGATGTGTGTTGATGGATTC--CGC 1196
Query 1693 AAGTAAAAAG-ATGTAGATTCATGTATATCATCTTTCTTTAGCCTATAAAACCTACT--T 1749
||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 1197 AAGTAAAAAATATGTAGATTAATGTATATCATCTTTCTTTAGCCTATAAAACCTACTACT 1256
Query 1750 C---ATACGAATTTACGGTTTAGATATTAAAAATGATGTCTCTTGCT 1793
| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1257 CTTGATACGAATTTACGGCTTAGATATTAAAAATGATGTCTCTTGCT 1303
> Ahg924996 jgi|Araly1|924996|scaffold_200557.1
Length=1661
Score = 926 bits (501), Expect = 0.0
Identities = 1276/1635 (78%), Gaps = 114/1635 (7%)
Strand=Plus/Plus
Query 72 ACAAC-AAAA-A-ATGATAATGAGAAGA-AGTCTAAGTCTGAGAAGCATCACGATGATGA 127
||||| |||| | ||||||| ||| ||| |||||||| |||||||||||||| |||||||
Sbjct 11 ACAACAAAAAGACATGATAACGAG-AGAGAGTCTAAGGCTGAGAAGCATCACAATGATGA 69
Query 128 TATTAATGGCTGTTTTGGTCTGGTC-AGTGACTCTAGAGACCTGCATTGCCAGAAGAGGA 186
| ||| || | | |||||||||| | ||||||||||| ||||||||||||||||||
Sbjct 70 TTTTAGTGACAATCCTGGTCTGGTCTA-CAACTCTAGAGACTTGCATTGCCAGAAGAGGA 128
Query 187 AGACATTGGAGACAT-AGCCACCGAAGCTCTTC-TGACTT-GTCTGATTCCTTGTCAAAC 243
|||||||||||||| | ||| | || || || | ||| ||||||||||||||| | |
Sbjct 129 AGACATTGGAGACACCA-CCATAGCAGTTCCTCCT--CTTTGTCTGATTCCTTGTCCAGC 185
Query 244 AAGAAACCGAAGAGCCATGGGAACAGTCACCACCACAGTTCTCACAACAACAACCATCAC 303
|||||||| || ||||||| ||||| ||||| ||| | ||| | | | || |
Sbjct 186 AAGAAACCAAAAAGCCATGTGAACA---ACCACAACAATAGTCATT-C--C--C-AT-A- 234
Query 304 CACAAGTCTAAACCTAAACCGAAACCAAAGCTGAAAAC---GCCGCCAAAAGCTCACG-- 358
| ||| ||||| ||||| ||||| ||| ||||||| |||||||||| ||| |
Sbjct 235 -A---GTCAAAACCAAAACCAAAACCGAAGATGAAAACTCAGCCGCCAAAA--TCAAGTG 288
Query 359 ACAATAACTCTCCGGTGGTTTCAGGGCCACCAAAAGT-C--CAACCACCGCC----TC-- 409
|| | || || || || ||| ||||||| |||| | |||||||| || ||
Sbjct 289 ACGGT---TCACCTGTCGTGTCACAGCCACCACAAGTTCAACAACCACCACCACCATCAC 345
Query 410 -T-T-CCGCCTCAA---A----A-GGG-A-TCTCAAGTTTTCAATGTGATGGATTTTGGA 456
| | |||| | || | | ||| | || |||| ||||||||| | |||||||||
Sbjct 346 CTCTTCCGC-TGAAGCCAGTTGATGGGGACTCACAAGAATTCAATGTGCTTGATTTTGGA 404
Query 457 GCAAAGGGTGATGGCAA-ATGTGATGACACTAAGGCGTTTGAAGCGGCTTGGGTAGCAGC 515
|| ||||||||||||| | ||||||||||| |||||||| ||||||| |||| | | ||
Sbjct 405 GCTAAGGGTGATGGCATGA-GTGATGACACTGAGGCGTTTAAAGCGGCGTGGGCATCTGC 463
Query 516 TTGCAAAATCGAAGCATCAGTGATGCTTGTACCGCCTGAATACA-CTTACCTTGTTGGAC 574
|||||| ||||||| ||| |||| | ||||||| || |||| ||| ||| || || |
Sbjct 464 CTGCAAAGTCGAAGCGTCAACGATGATCATACCGCCGGACTACATCTT-CCTCGTCGGCC 522
Query 575 CGATCTCATTCTCTGGTCCTTATTGTCAAGCTAACATTGTGTTCCAGCTTGATGGTACGA 634
|||| || || || ||||||||||||||||| |||||||| ||||| || ||||| | ||
Sbjct 523 CGATTTCCTTTTCGGGTCCTTATTGTCAAGCAAACATTGTATTCCAACTGGATGGGATGA 582
Query 635 TTATAGCTCCAACGGATTCA-AAGACATGGGGAAAAGGGTTAATGTGGTGGATTGATTTT 693
|| ||||||| |||||| | || | |||||| ||||||||||||||||||||| ||
Sbjct 583 TTGTAGCTCCTACGGATACTGAAT-CGTGGGGAGGAGGGTTAATGTGGTGGATTGAGTTC 641
Query 694 ACAAAGCTGAAAGGAATTA-AAGTACAAGGGAAAGGTGTTATTGATGGAAGAGGCT-CTG 751
|| ||||| |||||||||| || | ||||| ||||||||||||||||||||||| | |||
Sbjct 642 ACGAAGCTTAAAGGAATTACAATT-CAAGGTAAAGGTGTTATTGATGGAAGAGG-TACTG 699
Query 752 GTTGGTGGCAACAAGATTCTCCTTTC--ATTGAT---A--GT-GAT-AC--CAAACTCAT 800
||||||||||||||||| |||||| ||| || | | ||| || ||| |||||
Sbjct 700 TTTGGTGGCAACAAGATTA-CCTTTCCGATT-ATCCTATCGACGATGACTTCAAGCTCAT 757
Query 801 CGTCCCTTTGAACAATTCTGCTAACCAA-AAC--CCTCCTATGCCGATCAGAAGTGAGCT 857
||||| ||||||||||| | | |||| ||| ||||| |||||||| |||||||||||
Sbjct 758 TGTCCCGTTGAACAATTCGG-T--CCAAGAACGTCCTCCAATGCCGATAAGAAGTGAGCT 814
Query 858 TGAT-GAGAGAATGCCAAGCATTAAACCAACGGCATTGAGATTCTCTGGGAGTTTTGGTG 916
| || | ||||||||||||||||||||||||||| || | || | ||| ||| | | ||
Sbjct 815 TAATTG-GAGAATGCCAAGCATTAAACCAACGGCGCTGCGGTTTTATGGCAGTATCGATG 873
Query 917 TGGAA-GTGACGGGTATAACGATACAAAACAGTCCTCAGTGTCACCTCAAATTCGACGAC 975
|| | |||||||||||||| || || ||||||||||| ||||||||||| || || ||
Sbjct 874 TG-ACTGTGACGGGTATAACCATTCAGAACAGTCCTCAATGTCACCTCAAGTTTGATAAC 932
Query 976 TGCGTAGGGGTTGTGGTGCATGACAT-AGCCGTTTCTTCACCTGGTGACAGTCCAAACAC 1034
||||| |||| | || |||||| | | || ||||| || || ||||||||||||||
Sbjct 933 TGCGTCCAGGTTTTAGTTCATGACGTGAAT-GTGTCTTCTCCCGGAGACAGTCCAAACAC 991
Query 1035 TGATGGAATTCACCTCCAGAACACCAAAGATGTCCTCATTCACAGCACTAC-TCTCGCTT 1093
||||| ||||| | |||||||||||||||||| | ||||||| ||| || | | ||||
Sbjct 992 AGATGGGATTCATTTGCAGAACACCAAAGATGTCATGATTCACACCACCACAT-TAGCTT 1050
Query 1094 GCGGAGATGACTGTATCTCGATCCAAACGGGTTGCTCGAACGTGTTTGTGCACAATGTGA 1153
||||||| || ||||| ||||| |||||||||||||| || |||| ||| ||||||||||
Sbjct 1051 GCGGAGACGATTGTATTTCGATTCAAACGGGTTGCTCCAATGTGTATGTTCACAATGTGA 1110
Query 1154 ACTGTGGACCGGGTCACGGGATCAGCATTGGTAGTCTCGGCAAAGAGGGTACAAAAGCCT 1213
| |||||||| || || || |||||||||||||| || || ||||| |||| |||||||
Sbjct 1111 ATTGTGGACCAGGACATGGAATCAGCATTGGTAGCCTTGGTAAAGACAGTACCAAAGCCT 1170
Query 1214 GCGTCTCGAACATAACAGTACGAGACGTAGCTATGCACAACACAATGACAGGTGTCCGAA 1273
| ||||| ||||||||||| ||||| |||| |||||||||||||||||| |||||||| |
Sbjct 1171 GTGTCTCCAACATAACAGTCCGAGATGTAGTTATGCACAACACAATGACCGGTGTCCGGA 1230
Query 1274 TCAAGACATGGCAAGGAGG-AGTAGGATCAGTGAAAGGGATAATCTTCTCAAACATTCAG 1332
||||||| ||||| ||||| | |||||||||||||||| ||| | ||||||||||||||
Sbjct 1231 TCAAGACTTGGCAGGGAGGTA-TAGGATCAGTGAAAGGAATACTTTTCTCAAACATTCAA 1289
Query 1333 CTCAACCAAGTACAAATTCCAATAACGATAAACCAATTCTACTGTGACCATAGCAAATGC 1392
||||| | || || | || ||| ||| | |||||||||||||| || |||||||||
Sbjct 1290 CTCAAAGAGGTTCAGCTACCGATAGTGATCGATCAATTCTACTGTGATCACAGCAAATGC 1349
Query 1393 AAGAACCAAACATCAGCAGTAG-CAGTGGAAGGAGTGACTTACGAGAGGATAAAAGGAAC 1451
| |||||| || |||||||| | | || |||||||| || || |||| |||| |||||
Sbjct 1350 ATGAACCATACTTCAGCAGT-GTCCGTAGAAGGAGTCACATATGAGAAGATACGCGGAAC 1408
Query 1452 TTATACCGTGAAACCGGTGCATTTCGCTTGTAGCGATAACTTCCCGTGTGTAGATGTGCA 1511
||| |||||||| || |||||||| ||||| || || | ||||| || |||| |||||
Sbjct 1409 TTACACCGTGAAGCCTGTGCATTTTGCTTGCAGTGACAGTTTCCCTTGCATAGACGTGCA 1468
Query 1512 GTTATC-GTCGATAGAGCTTAAACCGGTTCAAGAA-AAGTATCGA-ATGTATGATGC-TT 1567
||||| | | |||||||| ||||| || ||| | || || | | ||||| ||| | ||
Sbjct 1469 ATTATCAGGC-ATAGAGCTAAAACCAGTGCAACTACAA-TACC-ACATGTACGATCCATT 1525
Query 1568 ATTGCTGGCAGACATTTGGTGAGCTCAACACTCCTACTC-TTCCTCCCATTGATTGTTTG 1626
||| ||| | |||||||| |||||||| | | || | |||| || |||||||| ||
Sbjct 1526 -TTGTTGGAAAACATTTGGAGAGCTCAATTCGGCAAC-CGTTCCACCGATTGATTGCTT- 1582
Query 1627 A-AGATTGGGAAGCC 1640
| |||| || |||||
Sbjct 1583 ACAGATCGGAAAGCC 1597
> Ahg919854 jgi|Araly1|919854|scaffold_101135.1
Length=469
Score = 676 bits (366), Expect = 0.0
Identities = 419/442 (95%), Gaps = 14/442 (3%)
Strand=Plus/Plus
Query 61 TCTTCGTTT-AGACAAC-AAAAAATGATAATGAGAAGAAGTCTAAGTCTGAGAAGCATCA 118
||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCTTC-TTTGAGACAACAAAAAAATGATAATGAGAAGAAGTCTAAGTCTGAGAAGCATCA 59
Query 119 CGATGATGATATTAATGGCTGTTTTGGTCTGGTCAGTGACTCTAGAGACCTGCATTGCCA 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 CGATGATGATATTAATGGCTGTTTTGGTCTGGTCAGTGACTCTAGAGACCTGCATTGCCA 119
Query 179 GAAGAGGAAGACATTGGAGACATAGCCACCGAAGCTCTTCTGACTTGTCTGATTCCTTGT 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 GAAGAGGAAGACATTGGAGACATAGCCACCGAAGCTCTTCTGACTTGTCTGATTCCTTGT 179
Query 239 CAAACAAGAAACCGAAGAGCCATGGGAACAGTCACCACCACAGTTCTCACAACAAC-A-A 296
||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||| | |
Sbjct 180 CAAGCAAGAAACCAAAGAGCCATGGGAATAGTCACCACCACAGTTCTCACAACAACCACA 239
Query 297 -C--CATC-A-C--CACAAGTCTAAACCTAAACCGAAACCAAAGCTGAAAACGCCGCCAA 349
| || | | | |||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 240 ACGACAACCATCATCACAAGTCTAAACCCAAACCGAAACCAAAGCTGAAAATGCCGCCAA 299
Query 350 AAGCTCA-CGACAATAACTCTCCGGTGGTTTCAGGGCCACCAAAAGTCCAACCACCGCCT 408
|| || | ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 300 AATCT-AGCGACAATAACTCTCCGGTGGTTTCACGGCCACCAAAAGTCCAACCACCGCCT 358
Query 409 CTTCCGCCTCAAAAGGGATCTCAAGTTTTCAATGTGATGGATTTTGGAGCAAAGGGTGAT 468
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 CTTCCGCCGCAAAAGGGATCTCAAGTTTTCAATGTGATGGATTTTGGAGCAAAGGGTGAT 418
Query 469 GGCAAATGTGATGACACTAAGG 490
||||||||||||||||||||||
Sbjct 419 GGCAAATGTGATGACACTAAGG 440
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67305462915
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5