BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G10650.1
Length=1519
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471187 jgi|Araly1|471187|fgenesh2_kg.1__1141__AT1G10650.2 1482 0.0
Ahg889815 jgi|Araly1|889815|Al_scaffold_0007_1801 171 2e-41
> Ahg471187 jgi|Araly1|471187|fgenesh2_kg.1__1141__AT1G10650.2
Length=1601
Score = 1482 bits (802), Expect = 0.0
Identities = 954/1024 (93%), Gaps = 24/1024 (2%)
Strand=Plus/Plus
Query 505 TGGGAGGTGGATGCACTGTTGATCCAGTAAACTACTTTGCTAACGATAACCTCGTTCCAA 564
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 590 TGGGAGGTGGATGCACTGTTGATCCAGTAAACTACTTTGCTAACGATAATCTCGTTCCAA 649
Query 565 TGATCCGCCCTAACAAAAGAGGAAGGGAAGCCGAAAGCATTAGTAACAACATCCAAAGAC 624
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 650 TGATTCGGCCTAACAAAAGAGGAAGGGAAGCCGAAAGCATTAGTAACAACATCCAAAGAC 709
Query 625 AACAGCAGAAGCTTCAAATGTCTTTGAACTATAATTATAACAACACTAGTGTTCGAGAAG 684
| | |||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||
Sbjct 710 -A-A-CAGAAGCTTCAAATGTCTTTGAACTACAATCATAACAACATTAGTGTTCGAGAAG 766
Query 685 AAGTGCCTAAAGAGAATCTAGTCTCAACTGGTCTGAGACTATCTTATGACGACGATGAAC 744
|||||| ||||||||||||||| || |||||||| |||||||||||||| ||||||||||
Sbjct 767 AAGTGCGTAAAGAGAATCTAGTATCTACTGGTCTTAGACTATCTTATGATGACGATGAAC 826
Query 745 ACAATTCTTCAGTGACTTCTGCTAGTGGTAGCATTTTAGCTGCTTCTCCAATCTTTCAGT 804
||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 827 GCAACTCTTCAGTGACTTCTGCTAGTGGTGGCATTGTAGCTGCTTCTCCAATCTTTCAGT 886
Query 805 CACTCGATGATAGTCTTCGGATTGATCTCCATAGACAAAAAGATGAGTTTGACCAGTTCA 864
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 887 CACTCGATGATAGTCTTCGGATTGACCTCCATAGACAAAAAGATGAGCTTGACCAGTTCA 946
Query 865 TCAAGATCCAGGCAGCTCAAATGGCGAAAGGTGTGAGGGATATGAAACAGAGACACATCG 924
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 947 TCAAGATCCAGGCAGCTCAAATGGCGAAAGGTGTGAGAGATATGAAACAGAGACATATCG 1006
Query 925 CGTCTTTTCTCACAACATTAGAGAAAGGAGTGAGCAAGAAGCTTCAAGAGAAAGATCACG 984
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1007 CGTCTTTTCTCACTACATTAGAGAAAGGAGTGAGCAAGAAGCTTCAAGAGAAAGATCACG 1066
Query 985 AGATCAATGATATGAACAAGAAGAATAAAGAGCTTGTGGAGCGGATAAAGCAAGTGGCAA 1044
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1067 AGATCAATGACATGAACAAGAAGAATAAAGAGCTCGTGGAGCGGATAAAGCAAGTGGCAA 1126
Query 1045 TGGAAGCTCAGAATTGGCACTACAGAGCAAAGTACAATGAGTCTGTGGTTAATGTCTTAA 1104
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1127 CGGAAGCTCAGAATTGGCACTACAGAGCAAAGTACAATGAGTCTGTGGTTAATGTCTTAA 1186
Query 1105 AGGCAAATCTCCAACAAGCAATGTCACACAACAACAGTGTGATAGCTGCTGCAGATCAAG 1164
|||||||||||||||||||||||||||||||||||| |||||| | ||| ||||||||||
Sbjct 1187 AGGCAAATCTCCAACAAGCAATGTCACACAACAACAATGTGATTGGTGCGGCAGATCAAG 1246
Query 1165 GCAAAGAAGGTTTTGGAGACAGCGAAATAGATGATGCAGCTTCATCATACATCGATCcaa 1224
|||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 1247 GCAAAGAAGGGTTTGGAGACAGTGAAATAGATGATGCAGCTTCATCATACATTGATCCAA 1306
Query 1225 acaacaataacaacaacaacaTGGGGATTCATCAGAGGATGAGATGCAAAATGTGCAACG 1284
||||||| ||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 1307 ACAACAA---CAAGA------TGGGGATTCATCAGAGGATGAGATGCAAAATGTGCAACG 1357
Query 1285 TCAAGGAAGTATCGGTGTTGATAGTGCCATGTCGGCACTTGAGTTTGTGTAAAGAATGTG 1344
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 1358 GGAAGGAAGTATCGGTGTTGCTCGTGCCATGTCGGCACTTGAGTTTGTGTAAAGAATGTG 1417
Query 1345 ATGTATTCACTAAGATTTGTCCTGTATGCAAGTCTTTGAAAAGTTCTTGCGTCCAAGTCT 1404
||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||
Sbjct 1418 ATGTATTCACTAAGATTTGTCCTGTATGCAAGTCTTTGAAAAGTTCTAGCGTTCAGGTCT 1477
Query 1405 TCTTTTCTTGATT-TGTGACCAAA--TGGAACA---GAA--G--G-AAAAAGAGAATCCA 1453
||||||||||| | |||||||||| ||||||| ||| | | ||||| ||||||||
Sbjct 1478 TCTTTTCTTGAATCTGTGACCAAAACTGGAACAAAAGAAAAGAAGGAAAAATAGAATCCA 1537
Query 1454 TTATATAAGTCTTTCATACTCTTTTTaaaaaa-aTATTTTGTTATATAAATTTATTTGTA 1512
|||||||||||||||| |||||||| |||| | ||||||| |||||||| |||||||||
Sbjct 1538 TTATATAAGTCTTTCAAACTCTTTTCAAAAGATATATTTTACTATATAAAATTATTTGTA 1597
Query 1513 TCGG 1516
||||
Sbjct 1598 TCGG 1601
Score = 606 bits (328), Expect = 1e-172
Identities = 456/512 (89%), Gaps = 31/512 (6%)
Strand=Plus/Plus
Query 1 TCCCCCACTTCTTCCACCACTGTCCCGCTCCATCGCACCCGCTTTGCTTACCACATCCAT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCCCCCACTTCTTCCACCACTGTCCCGCTCCATCGCACCCGCTTTGCTTACCACATCCAT 60
Query 61 C-At--t-cattcatttccttt-ctttctttcttcttcttccgtttcttttgcctctttc 115
| || | |||||||||| ||| |||||| ||||||||||||||||||||||||||||||
Sbjct 61 CCATCATTCATTCATTTCATTTTCTTTCTCTCTTCTTCTTCCGTTTCTTTTGCCTCTTTC 120
Query 116 ttttgtcttcttccttctatttttttgtggctttAAATTTATTGGGttttgttcttcttc 175
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 121 TTTTGTCTTCTTCCTTCAATTTTTT-GTGGCTTTAAATTTATTGGGTTTTGTTCTTCTTC 179
Query 176 ttcttctatagccgtttcatcttcacaata-gcatcttcttctt-t-ttttC--CCTGTC 230
| |||||||||||||||||||| || ||||||||||||| | |||| ||||||
Sbjct 180 T------ATAGCCGTTTCATCTTCACA-TAAGCATCTTCTTCTTCTCTTTTTTTCCTGTC 232
Query 231 AAGATCCTGAATCATCGGATCTAGAAGGAAACTAGAGTTTGTGAAATCAGATTAAATCTT 290
|||||||||||||||||||||| ||||||||||||||||||||||||| ||| || ||||
Sbjct 233 AAGATCCTGAATCATCGGATCTGGAAGGAAACTAGAGTTTGTGAAATCGGATGAA-TCTT 291
Query 291 GTGAGAAATCTCTGAAAAAGCTGCAGGTTTCTATA-CTTCTGTTAGTACTCTAATTCAAC 349
||||||||||||||| ||| | | ||| ||| | ||| ||||||||||||||||||
Sbjct 292 TTGAGAAATCTCTGAATAAGGTATAATTTT-TATTTCCTCTTTTAGTACTCTAATTCAAC 350
Query 350 CGAGAAAGTCGAATACATACACACATTCATAACACTTTTGAGGAAGATGTTAAGTGGAAA 409
|||| |||||||| ||| | || || | |||||||||||||| ||||||||||
Sbjct 351 AGAGAGAGTCGAAT---TACTCG--TT--TA-C--TTTTGAGGAAGATGCTAAGTGGAAA 400
Query 410 CAATGGAAACACTGCACCACCGGTTTTCATGAACGAGAACCAGTTGCAATACCAGACAAA 469
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 401 CAATGGAAACACTGTACCACCGGTTTTCATGAACGAGAACCAGTTGCAATACCAGACAAA 460
Query 470 CCTACGATCGAATCAGCTTCACTTGCTCGGAA 501
||||| ||||||||||||||||||||| ||||
Sbjct 461 CCTACAATCGAATCAGCTTCACTTGCTTGGAA 492
> Ahg889815 jgi|Araly1|889815|Al_scaffold_0007_1801
Length=2640
Score = 171 bits (92), Expect = 2e-41
Identities = 120/134 (90%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 724 TATCTTATGACGACGATGAACACAATTCTTCAGTGACTTCTGCTAGTGGTAGCATTTTAG 783
|||||||||| |||||||| | ||| |||||||||| |||| ||||| |||||||| |||
Sbjct 2504 TATCTTATGATGACGATGACCGCAACTCTTCAGTGAGTTCTACTAGTTGTAGCATTGTAG 2563
Query 784 CTGCTTCTCCAATCTTTCAGTCACTCGATGATAGTCTTCGGATTGATCTCCATAGACAAA 843
|||||||||||||||||||||||||| ||| ||||||||||||||| ||| |||||||||
Sbjct 2564 CTGCTTCTCCAATCTTTCAGTCACTCCATGTTAGTCTTCGGATTGACCTCAATAGACAAA 2623
Query 844 AAGATGAGTTTGAC 857
||||||| |||||
Sbjct 2624 AAGATGAACTTGAC 2637
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56868735785
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5