BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G10657.1
Length=862
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471189 jgi|Araly1|471189|fgenesh2_kg.1__1143__AT1G10657.2 527 5e-149
> Ahg471189 jgi|Araly1|471189|fgenesh2_kg.1__1143__AT1G10657.2
Length=714
Score = 527 bits (285), Expect = 5e-149
Identities = 345/372 (93%), Gaps = 11/372 (3%)
Strand=Plus/Plus
Query 3 GTGTATTTATATTTAGAAGCTTCCTAGTTTTGTCTA-AGAAAATATCTTCTTGTTTTGTT 61
|||||| ||||||||||||||||||| ||||||| | ||||||||||||| |||||||||
Sbjct 1 GTGTATCTATATTTAGAAGCTTCCTAATTTTGTC-ACAGAAAATATCTTCATGTTTTGTT 59
Query 62 CCTTTCAGCGCTATAACTCATAATTCTCTTCCAAAGTTCTTGGATTTGTTCCCCAAATCA 121
|||||| |||||||||||||||||| |||||||| ||||||||||||| ||||||||||
Sbjct 60 CCTTTC--CGCTATAACTCATAATTCACTTCCAAATTTCTTGGATTTGTGCCCCAAATCA 117
Query 122 ACTGGAGATCTaagaagaagaagaagaagagcgaagatcaaaggataaggaagaagagag 181
|||||||||||| |||||||||||| | | |||||||||||||| || |||||||| |
Sbjct 118 TCTGGAGATCTAACAAGAAGAAGAAG-A-A-CGAAGATCAAAGGAGAAAGAAGAAGA-A- 172
Query 182 gaaAATGTGTACTCATGC-TGATGAATCACAACACAACAATCTCCCTTGTCTCCATTGCC 240
|||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||
Sbjct 173 GAAAATGTGTACTCAT-CATGATGAATCACAACACAACAATCTCCCTTGTCTCCGTTGCC 231
Query 241 AACCACATTCTTACATTCGCATGGTTCAACATATGATAGAGAGATGCATTCTACTCCGTA 300
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 232 AACCACATTCTTACATTCGCATGGTTCAACATATGATTGAGAGATGCATTCTACTCCGTA 291
Query 301 TGACGCGGGACGAATGCGTCAAGGCGTTAGACCACCACGCAAGCATTCTACCACTCGTTA 360
|||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 292 TGACTCGTGACGAATGCGTCAAGGCGTTAGACCATCACGCAAGCATTCTACCACTCGTTA 351
Query 361 CACTCACTGTTT 372
| ||||||||||
Sbjct 352 CGCTCACTGTTT 363
Score = 375 bits (203), Expect = 2e-103
Identities = 327/381 (86%), Gaps = 31/381 (8%)
Strand=Plus/Plus
Query 441 GTTTGGAGAGGACTTCAAAGAGAAAACAAGGACTTCTTTGAAACGTATGGGCATTTCGTC 500
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 360 GTTTGGAGAGGACTTCAAAGAGAAAATAAGGACTTCTTTGAAACGTATGGGCATTTCGTC 419
Query 501 TCTCCTAGGCCCTTCTTAAGCGGATATGTTCGAAGATCGCCGAGGTTTGCGAAAAGGATA 560
|||||||||||||||||||| |||||||| |||||||||||||||||||| ||||| ||
Sbjct 420 TCTCCTAGGCCCTTCTTAAGTGGATATGTCCGAAGATCGCCGAGGTTTGCAAAAAGAATG 479
Query 561 TAATGAAGA-C--TTGGTTTAGGCTCGTAGCTAGATATATAGGAGAAAAAGCTTGAACTT 617
||||||||| | |||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 480 TAATGAAGATCACTTGGTTTAGGCTTGTAGCTGGATATATAGGAGAAAAAGCTTGAACTT 539
Query 618 TATATATACCTAGGCATATGTATTACATATTCCTATGATGAAATACTCATGCTTATTATC 677
||||||||| || | ||||| | || | ||||||||||||||||| ||||
Sbjct 540 TATATATAC-TA--C----GTATTCC-TA-----A-GATGAAATACTCATGCTC-TTATA 584
Query 678 TGTGGTCCTTTTGATGTCATAAGGTTCCCCTATAAGATTAAGCAG-ATAA-GATTGATTT 735
|||||||||||||| | |||||||| |||||||||||||| | | || | | ||||
Sbjct 585 TGTGGTCCTTTTGAACTT-TAAGGTTCGACTATAAGATTAAGCGGGAAAACGGT--ATTT 641
Query 736 TCGTGTGTAAACTAGTTTTAAGGTTGCTTATTTAGATAATTAGATGCAGTCTGTTTATTG 795
||||||||||||||||||||||||||||||||||||| | |||||| ||||| |
Sbjct 642 TCGTGTGTAAACTAGTTTTAAGGTTGCTTATTTAGAT-----G---CAGTCTATTTATCG 693
Query 796 AAAACCCTCGATTATAAGAGG 816
| |||||| ||||||||||||
Sbjct 694 ATAACCCTGGATTATAAGAGG 714
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31908881529
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5