BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G10660.2
Length=1648
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919857 jgi|Araly1|919857|scaffold_101138.1 1554 0.0
> Ahg919857 jgi|Araly1|919857|scaffold_101138.1
Length=1002
Score = 1554 bits (841), Expect = 0.0
Identities = 952/1006 (95%), Gaps = 5/1006 (0%)
Strand=Plus/Plus
Query 315 TTAGGACTGTATTGACTGGCCATGGCTGCTGATACCACAGCTTCAAGTTACTGGTTGAAT 374
|||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1 TTAGGACTCTATTGACGGGCCATGGCTGCTGATACCACATCTTCAAGTTACTGGTTGAAT 60
Query 375 TGGAGGGTCCTCCTCTGTGCATTAATCCTCTTAGCTCCAATAGTATTAGCAGCTGTTCTC 434
||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 61 TGGAGGGTCATCCTCTGTGCATTAATCCTCTTAGCTCCACTAGTTTTAGCAGCTGTTCTC 120
Query 435 ATTTGGAAATATGAAGGCAAGAGAAGAAGACAACGCGAGAGCCAGCGAGAATTACCAGGG 494
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||
Sbjct 121 ATTTGGAAATATGAAGGCAAGAGGAGAAGACAACGCGAGAGCCAGCGAGTGTTACCCGGG 180
Query 495 ACATTGTTCCAAGATGAAGCTTGGACCACATGTTTTAAAAGAATCCACCCTCTTTGGTTG 554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ACATTGTTCCAAGATGAAGCTTGGACCACATGTTTTAAAAGAATCCACCCTCTTTGGTTG 240
Query 555 CTTGCCTTTAGGGTATTCTCGTTTGTTGCAATGTTGACTTTACTCATTTCCAATGTTGTG 614
||||||||||| |||||||| |||||||||||||||||| | ||||| ||||||||||||
Sbjct 241 CTTGCCTTTAGAGTATTCTCATTTGTTGCAATGTTGACTCTGCTCATCTCCAATGTTGTG 300
Query 615 CGCGATGGAGCTGGCATATTCTACTTCTATACTCAGTGGACATTTACTCTTGTCACACTC 674
|| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 301 CGAGATGGAGCCGGCATATTCTACTTCTATACTCAGTGGACGTTTACTCTTGTCACACTC 360
Query 675 TACTTTGGGTATGCTTCGGTGTTATCTGTTTATGGATGCTGCATCTATAATAAAGAAGCT 734
||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 361 TACTTTGGGTATGCTTCGGTGTTATCTATTTATGGATGCTGCATCTACAATAAAGAAGCT 420
Query 735 AGTGGAAACATGGAGAGTTATACAAGTATAGGTGATACGGAACAAGGCACTTATAGACCA 794
|||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 421 GGTGGAAACATGGAGAGTTATACAAGTATTGGTGATACGGAGCAAGGCACTTATAGACCA 480
Query 795 CCAATCGCTCTTGATGGGGAGGGAAATACGTCAAAAGCTTCCAATAGACCTTCAGAAGCA 854
||||||||||| |||||||||||||||||||||||| | ||||||| || ||||||||||
Sbjct 481 CCAATCGCTCTGGATGGGGAGGGAAATACGTCAAAATCATCCAATATACATTCAGAAGCA 540
Query 855 CCCGCCCGAAAAACAGCGGGGTTTTGGGTTTATATCTTTCAGATCCTTTTCCAAACTTGT 914
|||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 541 CCCGTCCGAGAAACAGCGGGGTTTTGGGTTTATACCTTTCAGATCCTTTTCCAAACTTGT 600
Query 915 GCAGGTGCTGTTGTGCTAACAGATATTGTATTTTGGGCGATAATCTACCCGTTTACTAAA 974
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 601 GCAGGTGCTGTTGTGCTAACAGATATCGTATTTTGGGCAATAATCTACCCGTTTACTAAA 660
Query 975 GGTTACAAGCTGAGTTTTCTCGATGTTTGTATGCATTCTCTCAACGCTGTTTTTCTCCTT 1034
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 661 GGTTACAAGCTGAGTTTTCTCGATGTTTGTATGCATTCTCTCAATGCTGTTTTTCTCCTT 720
Query 1035 GGTGACACAAGCCTCAATTCCTTGCGATTCCCACTGTTCCGGAT-TGCTTACTTTGTACT 1093
|| ||||||||||||||||||||||||| ||| ||||||||||| | |||||||||||||
Sbjct 721 GGCGACACAAGCCTCAATTCCTTGCGATACCCCCTGTTCCGGATCT-CTTACTTTGTACT 779
Query 1094 TTGGAGCTGTATTTTCGTGGCTTACCAATGGATAATCCATGCCGTCAAGAACTTATGGTG 1153
||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TTGGAGCTGCATTTTTGTAGCTTACCAATGGATAATCCATGCCGTCAAGAACTTATGGTG 839
Query 1154 GCCATACCAATTTCTTGATCTTTCGTCACCATACGCACCCTTATGGTACTTGGGAGTGGC 1213
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 840 GCCATACCAATTTCTTGATCTTTCGTCACCATATGCACCCTTATGGTACGTGGGAGTGGC 899
Query 1214 TGTGATGCATATACCATGCTTTGCGGTCTTCGCTTTGGTCATAAAGCTGAAGAATTACTT 1273
|||||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 900 AGTGATGCATATACCGTGCTTTGCGGTCTTCGCTTTGATCATAAAGCTGAAGAATCACTT 959
Query 1274 GCTGCAGCAGCGTCACAACTCGTGATAGTTTTGGTCTCCCCGAATT 1319
|||||||| | ||||||||||| ||||||||||| | ||||||||
Sbjct 960 GCTGCAGC-G--TCACAACTCGTAATAGTTTTGGTTTGCCCGAATT 1002
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61782377390
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5