BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G10690.1

Length=641
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg919860 jgi|Araly1|919860|scaffold_101141.1                        518    2e-146


> Ahg919860 jgi|Araly1|919860|scaffold_101141.1
Length=371

 Score =  518 bits (280),  Expect = 2e-146
 Identities = 320/339 (94%), Gaps = 4/339 (1%)
 Strand=Plus/Plus

Query  49   ACATTCGAGAGAAGTCATGGGATATTCCGGCAAACCTCACCACCAACTCGACGGCGAGAT  108
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  5    ACATTCGAGATAAGTCATGGGATATTCCGGCAAACCTCACCACCAACTCGACGGCGAGAT  64

Query  109  ACGAG-AATCCACCGACGGTAAAAAATGGGTCATCGCCGGAATTCCCTCACGTTCCCCTC  167
            ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct  65   ACGAGAAAT-CACCGACGGTAAAAAATGGGTCATCGCCGGAATTCCCTCACGTTCGCCGC  123

Query  168  TCAAGCAGATTAACCTATCTCCCGGCGTCACAGTTACCGAAACAGAGGAGCAAGATCAGT  227
            ||||||||||| |||| ||| |||||||||||||||||||||||||||| ||||||||||
Sbjct  124  TCAAGCAGATTGACCTTTCTTCCGGCGTCACAGTTACCGAAACAGAGGATCAAGATCAGT  183

Query  228  GTCCTACGACCCCTACGGCGGTTTCCGTCAGAATTCCAAGGGTCCCGCCGTGTCCAGCGG  287
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  184  GTCCGACGACCCCTACGGCGGTTTCCGTCAGAATTCCAAGGGTCCCGCCGTGTCCAGCGG  243

Query  288  CGCCAAAGAAGCGTAAACCGTCGTTGAAGTGCAGTTACG-TCACCGTCACTAGAGATTAC  346
            ||||||||||||| ||||||||||||||||||||||||| |  ||| | ||||||||| |
Sbjct  244  CGCCAAAGAAGCGAAAACCGTCGTTGAAGTGCAGTTACGGTG-CCGGCGCTAGAGATTTC  302

Query  347  TTCTCTCCGCCGGACCTAGAAACCGTTTTCATTCAAAGA  385
            ||||||||||||||||| ||||||||||||||||| |||
Sbjct  303  TTCTCTCCGCCGGACCTCGAAACCGTTTTCATTCAGAGA  341



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23483716872


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5