BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G10700.1
Length=1518
Score E
Sequences producing significant alignments: (Bits) Value
Ahg312113 jgi|Araly1|312113|fgenesh1_pm.C_scaffold_1000893 1282 0.0
> Ahg312113 jgi|Araly1|312113|fgenesh1_pm.C_scaffold_1000893
Length=1410
Score = 1282 bits (694), Expect = 0.0
Identities = 778/819 (95%), Gaps = 4/819 (0%)
Strand=Plus/Plus
Query 54 ATGGCGGCTATTTCTCCGGCGAATGCAACCACCGCTGCTTCACTCTCCCTGCCTCAATTT 113
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1 ATGGCGGCTATTTCTCCGGCGAATGCAACTACCGCGGCTTCACTCTCCCTGCCTCAATTT 60
Query 114 AGCTCAACTTCTTCCTCGTTATCTTCTTCTTCGTCTCCATCGTTTCTTAATTTCAAAACT 173
||||| | |||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 61 AGCTCTAGTTCTTCCTCGCTATCTTCTTCTTCGTCTCCAACGTTTCTTAATTTCAAAACT 120
Query 174 GCTTCAGTCAGTAATCGCTGCATCAAGTGCGGAGTCAGAAGCTTAGAGAACCAC-TCTGG 232
||| ||||||||||||||||| | |||||||||||||||||||||||||||| | || ||
Sbjct 121 GCTACAGTCAGTAATCGCTGCGTGAAGTGCGGAGTCAGAAGCTTAGAGAACC-CGTCGGG 179
Query 233 TCACCGGAGCCTCGATTTCTTATCCAATGGGGATCCGATCAGCCTAATTAATCCGAATTC 292
||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 180 TCATCGGAGCCTAGATTTCTTATCCAATGGGGATCCGATCAGCCTAATTAATCAGAATTC 239
Query 293 ATCGTCTCCTATAACCATGGCCGCGGCGACGTCGGAATCCGGTTCGAAGAGCTCTAAGCG 352
||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||
Sbjct 240 GTCGTCTCCTATAACCATGGCCGCGGCGGCGTCGGAATCCGGTCCGAAGTCCTCTAAGCG 299
Query 353 CGTCTGTCTCTTCCACAGCGACGAGACTAGAGATCTCGCCGAGAGAATCGTCGCAAAATC 412
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 300 CGTCTGTCTCTTCCACAGCGACGAAACTAGAGATCTCGCCGAGAGAATCGTCGCAAAATC 359
Query 413 TGATTGCATTGAGCTACGAAGCATCAATTGGAAGAAATTTGATGATGGATTCCCTAATTT 472
||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 360 TGATTGCATTGAGATACGAAGCATCAATTGGAAGAAATTTGACGATGGATTCCCTAACTT 419
Query 473 GTTCATACAAAATGCTCAAGGCATTCGTGGGCAGCATGTTGCTTTCTTGGCTTCATTCAG 532
|||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 420 GTTCATACAAAACGCTCAAGGCATTCGTGGGCAGCATGTTGCTTTCCTGGCTTCATTTAG 479
Query 533 TTCACCTGCTGTGATCTTCGAGCAGCTTTCGGTTATTTATGCTCTGCCTAAGCTTTTTGT 592
|||||| |||||||||||||||||||| ||||||||||||||||| || |||||||||||
Sbjct 480 TTCACCCGCTGTGATCTTCGAGCAGCTCTCGGTTATTTATGCTCTTCCCAAGCTTTTTGT 539
Query 593 TTCTTCGTTTACACTTGTTCTTCCATTCTTTCCTACTGGAACTTCTGAGAGAATGGAAGA 652
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TTCTTCATTTACTCTTGTTCTTCCATTCTTTCCTACTGGAACTTCTGAGAGAATGGAAGA 599
Query 653 CGAAGGAGATGTGGCCACTGCTTTTACTCTCGCTAGGATACTCTCTAATATTCCGACTTC 712
|||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||
Sbjct 600 CGAAGGAGATGTGGCCACTGCTTTCACTCTCGCTAGGATACTCTCAAATATACCGACTTC 659
Query 713 GAGAGGAGGACCGACTAGCCTAGTGACCTTCGATATACATGCCTTGCAGGAAAGATTCTA 772
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 660 AAGAGGAGGACCGACTAGCTTAGTGACCTTCGATATACATGCCTTGCAGGAAAGATTCTA 719
Query 773 CTTTGGTGATACTATACTTCCATGCTTTGAAAGTGGTATACCATTGCTCAAGAGCAGACT 832
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 CTTTGGTGATACTATACTTCCATGCTTTGAAAGTGGTATACCATTGCTCAAGAGCAGACT 779
Query 833 CCAGAGTCTACCTGATTCTGATAACATATCTATTGCATT 871
||||||||||||||||||||||||||| || ||| ||||
Sbjct 780 CCAGAGTCTACCTGATTCTGATAACAT-TCAATT-CATT 816
Score = 327 bits (177), Expect = 1e-88
Identities = 191/198 (96%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 858 ATATCTATTGCATTCCCAGATGATGGAGCATGGAAGCGTTTCCACAAGCAACTCCAACAT 917
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 844 ATATCTATTGCATTCCCAGATGATGGAGCATGGAAGCGTTTCCACAAACAACTCCAACAT 903
Query 918 TATCCAACGATTGTTTGCAACAAAGTAAGAATGGGAGACAAACGAATAGTGCGTATCAAA 977
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 904 TATCCAACGATTGTTTGCAACAAAGTAAGAATGGGAGACAAACGAATAGTGCGTATTAAA 963
Query 978 GAGGGAGACGCTGAAGGAAGGCACGTCGTGATTGTTGATGATTTGGTTCAGTCGGGTGGC 1037
|| |||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 964 GAAGGAGACGCCGAAGGAAGGCACGTTGTGATTGTTGATGACTTGGTTCAGTCGGGTGGC 1023
Query 1038 ACATTAATCGAATGCCAG 1055
||| ||||||||||||||
Sbjct 1024 ACACTAATCGAATGCCAG 1041
Score = 246 bits (133), Expect = 3e-64
Identities = 135/136 (99%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 1154 AGGTGATCCCGCGGAAGGTCTGAGCTATTTCTGGATCACAGACTCGTGTGGGATGACTGT 1213
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1275 AGGTGATCCCGCGGAAGGTCTGAGCTATTTCTGGATCACAGACTCGTGTGGAATGACTGT 1334
Query 1214 GAAAGAGGTGATGAATAAACCTCCTTTTGAAGTTCTTAGCCTGGCTGGCTCCATAGCTTC 1273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1335 GAAAGAGGTGATGAATAAACCTCCTTTTGAAGTTCTTAGCCTGGCTGGCTCCATAGCTTC 1394
Query 1274 TGCTCTTCAAGTTTAA 1289
||||||||||||||||
Sbjct 1395 TGCTCTTCAAGTTTAA 1410
Score = 178 bits (96), Expect = 1e-43
Identities = 100/102 (98%), Gaps = 0/102 (0%)
Strand=Plus/Plus
Query 1056 AAAGTCTTAGCTGCACATGGAGCAGCGAAGATAAGCGCATATGTAACACACGGGATCTTC 1115
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1072 AAAGTCTTAGCTGCACATGGAGCAGCGAAAATAAGCGCATATGTAACACACGGGATCTTC 1131
Query 1116 CCCAGGAGTTCATGGAAACGTTTCAAGCTTGACACCAAAGGT 1157
|||| |||||||||||||||||||||||||||||||||||||
Sbjct 1132 CCCAAGAGTTCATGGAAACGTTTCAAGCTTGACACCAAAGGT 1173
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56830645540
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5