BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G10710.1
Length=1437
Score E
Sequences producing significant alignments: (Bits) Value
Ahg910808 jgi|Araly1|910808|Al_scaffold_0001_1062 1792 0.0
> Ahg910808 jgi|Araly1|910808|Al_scaffold_0001_1062
Length=1239
Score = 1792 bits (970), Expect = 0.0
Identities = 1146/1230 (93%), Gaps = 15/1230 (1%)
Strand=Plus/Plus
Query 66 ATGGCGGGATCTCTAACAGCATCAAACCGCCGTAGAAACGCGGAGGATTCTTCAGAAATT 125
||||||||||||||||||||||||| ||||||| ||||| |||||| |||||||||||||
Sbjct 1 ATGGCGGGATCTCTAACAGCATCAACCCGCCGTGGAAACACGGAGGCTTCTTCAGAAATT 60
Query 126 TACCGGTGGACGATCGGTTTTGCTCGGTTTGTTCACTATCCATCTTCTCCTTCTCCGCAT 185
|||||||||| |||||||||||||||||||||||||||||||||| ||||||||| | |
Sbjct 61 TACCGGTGGATGATCGGTTTTGCTCGGTTTGTTCACTATCCATCTACTCCTTCTCAGTGT 120
Query 186 CCAGTTCTGAAACCTCTCGGAAAGAGAGAGCAGTATCATTCGCCCCACGGAACCTGGCTG 245
|||| ||||| ||||||||||| |||||||| ||||||||||||||||||||||||| ||
Sbjct 121 CCAGGTCTGAGACCTCTCGGAAGGAGAGAGCTGTATCATTCGCCCCACGGAACCTGGTTG 180
Query 246 TCGGCGTCTTCTTCGACGGTTTCTCTCCACATTG-TCGACGAATTGAACCGATCCGATGT 304
|||||||||||||||||| | |||||||| | || |||||||| | ||| ||||||||||
Sbjct 181 TCGGCGTCTTCTTCGACGCTGTCTCTCCAGA-TGTTCGACGAAGTCAACAGATCCGATGT 239
Query 305 GATTCTATCCGTCAAACTCGGCCAGAAAGTCCTTGAAGAACACTACATTTCAAAGCTGAA 364
|||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 240 GATTCTCTCCGTCAAACTCGGCGAGAAAGTCCTTGAAGAACACTACATTTCAAAGCTGAA 299
Query 365 CTTCACATGGCCTCAGATGTCATGCGTTTCTGGGTTTCCATCTCGTGGTAGTCGAGCGAT 424
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TTTCACATGGCCTCAGATGTCATGCGTTTCTGGGTTTCCATCTCGTGGTAGTCGAGCGAT 359
Query 425 TTTCGTTACCTATATGGATTCTGCTAACCAGATCCAGAAATTTGCTTTAAGGTTTTCCAC 484
|||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 360 TTTCGTTACCTATAAGGATTCTGCAAACGAGATCCAGAAATTTGCTTTAAGGTTTTCCAC 419
Query 485 TTGTGATGCAGCGTTGGAGTTTGTGGAAGCTCTTAAGGAGAAGATTAAGGGTTTAAAGGA 544
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 420 ATGTGATGCAGCGTTGGAGTTTGTGGAAGCTCTTAAGGAGAAGTTTAAGGGTTTAGAGGA 479
Query 545 AGCTTCGACTCAGAACCAGAAAAATAAAACTAGGTGTGA--T-GTTTCTTTCCAGTCAGA 601
||| ||| |||||||| |||| ||||||||||||| | |||||||||||||||||
Sbjct 480 AGC-TCG-----GAACCAGAGAAATGAAACTAGGTGTGAGGTGGTTTCTTTCCAGTCAGA 533
Query 602 TTACAACCCTTCAGATGCGATTATCCCCAGAGCCACTCAGAAAGAGCCAAATATGGTTAG 661
||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 534 TTACAACCCTTCAAATGCGATCATCCCCAGAGCCACTCAGAAAGAGCCAAATATGGTTAA 593
Query 662 ACCTCTTAATAGTTATGTTCCTGAAATGCTACCAAGAATTGTGTATGAAGCTCAGTACCA 721
||||| ||||||||||||||||||||||| ||||||||||| |||||||| |||| ||||
Sbjct 594 ACCTCGTAATAGTTATGTTCCTGAAATGCAACCAAGAATTGAGTATGAAGTTCAGAACCA 653
Query 722 GAAAAGTGAAACTAGGTCCGAGGTTTCTTTCCAGTCAGATTACAACCCTTCAATTGAGAT 781
|||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 654 GAAAAGTGAAACTAGGTCCGAGGTTTCTTTCCAGACAGATTACAACCCTTCAAATGAGAT 713
Query 782 TTTCCCCAGAGCCACTGAGGAAGAGCCAAATATGGTTAGATTTTTTGATAGTTCTGTTCC 841
|||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 714 TTTCCCCAGAGCCATTGAAGAAGAGCCAAATATGGTTAGATTTTTTGATAGTTATGTTCC 773
Query 842 TGAAGTGCTACCAAGACCTGAGTATGAAGCTGGACA-AGCCTTATACCCATCACAATCCA 900
|||| ||| ||||||||||||||||||| ||||| | ||||||||| |||||||||||||
Sbjct 774 TGAAATGCAACCAAGACCTGAGTATGAAACTGGA-AGAGCCTTATATCCATCACAATCCA 832
Query 901 CGCTAAATCAAATCCC-AAGTCTTCCTCCGAGTTTCACAACCTTACTCTCTGGCTGCTTC 959
|||||||||||||||| || ||| |||||||||||||| ||||||||||||| ||||||
Sbjct 833 CGCTAAATCAAATCCCGAA-TCTCCCTCCGAGTTTCACCTCCTTACTCTCTGGTTGCTTC 891
Query 960 CCCGACTCCACTCTAGATGCAGGCCAAACAACTGTGAAGCAGAATCCTGATCTAAAGTCG 1019
|| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 892 CCTGACTCCACTCTAGATGCAGGCCAAACACCTGTGAAGCAGGATCCTGATCTAAAGTCA 951
Query 1020 CAGATACTGAAGTACATGGAAGATTCTTCATTTCAAGATATGCTGCAGAAAGTAGAGAGA 1079
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 952 CAGATACTGAGGTACATGGAAGATTCTTCATTTCAAGATATGCTGCAGAAAGTAGAGAGA 1011
Query 1080 ATTATCGACGAAATTGGAGATCGATGTGTAGGTAGCACGATAGGGAGATCGAGCAAAATC 1139
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1012 ATTATCGACGAAATTGGAGATCGATGTGCAGGTAGCACGATAGGGAGATCGAGCAAAATC 1071
Query 1140 TATATACCATTGTGTTTTCACAACAATTGCATCCACCCATTTAAAGATGATTGTTGGTGT 1199
||| ||||||||||||| ||| |||||||| ||| ||||||||| ||||||||||||||
Sbjct 1072 TATGTACCATTGTGTTTCCACGACAATTGCGTCCTGCCATTTAAAAATGATTGTTGGTGT 1131
Query 1200 TGTCTCGCAGCTGGAACTAAAAAAGATTGGTGTTGGCTAGAAAAAGATTTTCCCGACGCC 1259
|||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||
Sbjct 1132 TGTCTCGCAGCTGGAACTAAAAAAGATTGGTGTTGGGAAGAAAAAGATTATCCGGACGCC 1191
Query 1260 AAAGAGCTTTGTATGAAAACATGTACAAGA 1289
||||||||||||||||||||||||||||||
Sbjct 1192 AAAGAGCTTTGTATGAAAACATGTACAAGA 1221
Score = 159 bits (86), Expect = 4e-38
Identities = 141/167 (84%), Gaps = 5/167 (3%)
Strand=Plus/Plus
Query 708 GAAGCTCAGTACCAGA-AAAGTGAAACTAGGTCCGA---GGTTTCTTTCCAGTCAGATTA 763
||||||| | |||||| ||| ||||||||||| || |||||||||||||||||||||
Sbjct 478 GAAGCTCGGAACCAGAGAAA-TGAAACTAGGTGTGAGGTGGTTTCTTTCCAGTCAGATTA 536
Query 764 CAACCCTTCAATTGAGATTTTCCCCAGAGCCACTGAGGAAGAGCCAAATATGGTTAGATT 823
||||||||||| || ||| |||||||||||||| || |||||||||||||||||| |
Sbjct 537 CAACCCTTCAAATGCGATCATCCCCAGAGCCACTCAGAAAGAGCCAAATATGGTTAAACC 596
Query 824 TTTTGATAGTTCTGTTCCTGAAGTGCTACCAAGACCTGAGTATGAAG 870
| | |||||| |||||||||| ||| ||||||| |||||||||||
Sbjct 597 TCGTAATAGTTATGTTCCTGAAATGCAACCAAGAATTGAGTATGAAG 643
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53745335695
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5