BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G10717.1
Length=273
Score E
Sequences producing significant alignments: (Bits) Value
Ahg312115 jgi|Araly1|312115|fgenesh1_pm.C_scaffold_1000895 340 2e-93
> Ahg312115 jgi|Araly1|312115|fgenesh1_pm.C_scaffold_1000895
Length=270
Score = 340 bits (184), Expect = 2e-93
Identities = 236/259 (91%), Gaps = 11/259 (4%)
Strand=Plus/Plus
Query 6 ATCATCACATACAACTTTAATCTGTATAATCATGCTCTCCCTCTTTGCTCTGCATGAATG 65
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 6 ATCATCACATACAACTTTAATCTGCATAATCATGCTCTCCCTCTTTGCTCTGCATGAATG 65
Query 66 TGAG-AAGATGGAGGTGAAAGAGATAGGGAGATCGAGCAAAATC-ATTTTACCAGCGTGT 123
|| | |||||||||||||||||||||||| |||||||||||||| || | |||| |||||
Sbjct 66 TG-GCAAGATGGAGGTGAAAGAGATAGGGGGATCGAGCAAAATCTATAT-ACCACCGTGT 123
Query 124 ATGCATGAGACTTGCTCCGGTGGTTTCTCACTGAAAAATGATTGTTGGTGCTGCTTGCGA 183
|| |||||||||||| | ||||||||||||||||| |||||||||||||||||||| |
Sbjct 124 ATCCATGAGACTTGCA--G-TGGTTTCTCACTGAAAAGTGATTGTTGGTGCTGCTTGCAA 180
Query 184 CTTAAA-ACTAAACAAGCTCGTTGTTGGAAAGAAAAAGAATTTCCCAACGCTAAGGAGCT 242
||||| | |||| ||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 181 ATTAAACA-TAAAAAAGATCGTTGTTGGAAAGAGAAAGAATTTCCCAACGCTAAGGAGCT 239
Query 243 TTGTTTCG-CCAATTGTCC 260
|||||||| ||||| ||||
Sbjct 240 TTGTTTCGACCAAT-GTCC 257
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9500741661
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5