BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G10720.1
Length=1615
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471202 jgi|Araly1|471202|fgenesh2_kg.1__1156__AT1G10720.1 1851 0.0
> Ahg471202 jgi|Araly1|471202|fgenesh2_kg.1__1156__AT1G10720.1
Length=1379
Score = 1851 bits (1002), Expect = 0.0
Identities = 1237/1340 (92%), Gaps = 57/1340 (4%)
Strand=Plus/Plus
Query 4 TCAATCATAATGTTTTCGAATTTTTTGGAAAGCTTATACGATGGAATCGGAGACGATGA- 62
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCAATCATAATGTTTTCGAATTTTTTGGAAAGCTTATACGATGGAATCGGAGACGATGAC 60
Query 63 --CGCCGCCGACGACGACGAAGACAACAACAACGACGAGAAAACCCCGAAAGCCTCAACG 120
|||||||||||||||||||||||||||| | | |||||| ||||||| | | ||||||
Sbjct 61 GCCGCCGCCGACGACGACGAAGACAACAAC-A-G-CGAGAAGACCCCGAGATCATCAACG 117
Query 121 GAAAGACACGATTTCTCGAGAAACGCCGTTCGTTTGTCACCGGAAGAGGAGGCTCAAGCG 180
|||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 GAAAGACAAGATTACGAGAGAAACGCCGTTCGTTTGTCACCGGAAGAGGAGGCTCAAGCG 177
Query 181 CGTGGGGTTAAAGATGATTTGACGGAACTTGGTCATACCCTCACGCGTCAATTTCGTGGT 240
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 CGTGGTGTTAAAGATGATTTGACGGAACTTGGTCATACCCTCACGCGTCAATTTCGTGGT 237
Query 241 GTGGCTAACTTTCTCGCTCCGTTACCTGATGGATCTTCTTCTTCTTCCTCCGATCTATCG 300
|||||||||||||||||||||||||| |||||||||||||| | || || |||| | |
Sbjct 238 GTGGCTAACTTTCTCGCTCCGTTACCAGATGGATCTTCTTCAT-TT-AACCAATCT-T-G 293
Query 301 AACCATCCCAG-GTTT-AA-C----CAATCTCGGTCTTCAGATCCTGGA-TTGAATCAAT 352
| | ||| ||| || | ||||| |||||||| |||| | || || ||||||
Sbjct 294 -GTC-T-TCAGATTTTGAATCGAATCAATCGCGGTCTTCGGATCTTAGAGTT-TATCAAT 349
Query 353 CGCGTTCTTCAGATCGGGACGAATCGTGTGTTGGAAGTGATACGCCGGAGACTGGAATTA 412
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 350 CTCGGTCTTCAGATCGGGACGAATCGTGTGTTGGAAGTGATACGCCGGAGACTGGAATTA 409
Query 413 GGTTTAGGAGCTGGGATTTAGAAGAAAAATTGGCAGAAGGCAATGATCCGGAGGATGAGg 472
|||||||||||| | | | ||| | ||| | || | | | ||||
Sbjct 410 GGTTTAGGAGCT--G-----G--G----ATTTG--GAA-G-AA--A-----A--A-GAGG 442
Query 473 aagaagaagaagaggaaacagatgaagaagaagaagaagaagaagagaTCGCTGCGGTTG 532
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 443 AAGAAGAAGAAGAGGAAACAGATGAAGAAGAAGAAGAAGAAGAAGAGATTGCTGCGGTTG 502
Query 533 CTCTTACAGACGAAGTGCTAGCATTTGCGAGGAACATAGCAATGCATCCAGAAACTTGGT 592
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 503 CTCTTACCGACGAAGTGCTCGCATTTGCGAGGAACATAGCAATGCATCCAGAAACTTGGT 562
Query 593 TGGATTTTCCTCTTGATCCTGACGAAGATCTTGATGATTTGGAAATGAGTGATGCTCAAA 652
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 563 TGGATTTTCCTCTTGATCCTGACGAAGATCTTGATGATTTGGAAATGACTGATGCTCAAA 622
Query 653 GAGGTCATGCTTTAGCTATTGAGCGTCTTGCTCCGAGGTTAGCTGCATTGAGAATAGAGC 712
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 623 GAGGTCATGCCTTAGCTATTGAGCGTCTTGCTCCGAGGTTAGCTGCATTGAGAATAGAGC 682
Query 713 TTTGTCCATGTCATATGAGTGTTGGTTACTTCTGGAAAGTCTATTTTGTTCTTCTTCTTT 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 683 TTTGTCCATGTCATATGAGTGTTGGTTACTTCTGGAAAGTCTATTTTGTTCTTCTTCTTT 742
Query 773 CAAGGCTCAATAAACACGATGCTCATCTTTTGTCTTCTCCACAGGTGATGGAAGCTAGAG 832
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 743 CGAGGCTCAATAAACACGATGCTCATCTTTTGTCTTCTCCACAGGTGATGGAAGCAAGAG 802
Query 833 CATTGTGGATGAAAGAGCTTCAGAATCAGA-CACATTCTTCAAAAGAAAGTAGAGATATG 891
|||||||||||||||||||||||||||||| || |||||||||||||| ||||||||| |
Sbjct 803 CATTGTGGATGAAAGAGCTTCAGAATCAGACCA-ATTCTTCAAAAGAAGGTAGAGATAAG 861
Query 892 ATTCTTGAGGAAGAAGATATTACACCATCAACTTCTAATTACTACAACCATGCTCCTCCT 951
|||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 862 ATTCTTGA-G--GAAGATATTACACCATCAACTTCAAATTACTACAACCATGCTCCTCCT 918
Query 952 GAGTTTCTTTCTCCAAGAATATATGCTTTTGAACCTCCTTCGATTATGTATCGCGATTTT 1011
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 919 GAGTTTCTTTCTCCAAGAATATATGCTTTTGAACCTCCTTCGATTATGTATCGCGATTTC 978
Query 1012 GAACACGGGTTTGAAAACGCTCAGTTCATCGATAAAGCTGTTATTGAGGAAAAACCAATC 1071
|||||||||| ||||||||||| ||| ||||||||||||||||| |||||||||||||||
Sbjct 979 GAACACGGGTCTGAAAACGCTCGGTTTATCGATAAAGCTGTTATCGAGGAAAAACCAATC 1038
Query 1072 CAGAAGAACGACAAAAATAGTGCAAGCCTTAGCCAAACATCTAAAGATGTTGTtgatgat 1131
|||||||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 1039 CAGAAGAACGACAAAAATAGTGCAAGCCTTAGCCAAGCATCTAAAGA---TGTTGATGAC 1095
Query 1132 gatgatgatgatTGGCCAGAAGAAGAAGATTCTGCTAATTCTTGGGCTCCAATGTTTACA 1191
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1096 GATGATGATGATTGGCCAGACGAAGAAGATTCTGCTAATTCTTGGGCTCCAATGTTCACA 1155
Query 1192 GTGAATGAGGATGATGTTTCTTTCAGTGATCTTGAAGGAGACGACGATATAAGTAGCTTA 1251
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1156 GTGAATGAGGATGATGTTTCTTTCAGTGATCTAGAAGGAGACGACGATATAAGTAGCTTA 1215
Query 1252 GCACTCAAGTCTAAGATTACATCAAAGGGCACAGACCAAAAAGGAACATGAAACATCATC 1311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1216 GCACTCAAGTCTAAGATTACATCAAAGGGCACAGACCAAAAAGGAACATGAAACATCATC 1275
Query 1312 TGGCTTGTTGCTTTGCCCTG 1331
||||||||||||||||||||
Sbjct 1276 TGGCTTGTTGCTTTGCCCTG 1295
Score = 150 bits (81), Expect = 3e-35
Identities = 84/85 (99%), Gaps = 1/85 (1%)
Strand=Plus/Plus
Query 1370 TGTGTGCTGAGTCAAATCGTGGAAGTCTTTTGGGTGAGTTTGATTGTTTTGTGGATTTAT 1429
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1296 TGTGTGCTGAGTCAAATCGTGGAAGTCTTTTGGGTGAGTTTGATTG-TTTGTGGATTTAT 1354
Query 1430 GATGTTTGCTCTCaaagagaaggaa 1454
|||||||||||||||||||||||||
Sbjct 1355 GATGTTTGCTCTCAAAGAGAAGGAA 1379
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60525399305
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5