BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G10730.1 Length=1287 Score E Sequences producing significant alignments: (Bits) Value Ahg919872 jgi|Araly1|919872|scaffold_101153.1 2039 0.0 Ahg475254 jgi|Araly1|475254|fgenesh2_kg.2__384__AT1G60780.1 1541 0.0 > Ahg919872 jgi|Araly1|919872|scaffold_101153.1 Length=1327 Score = 2039 bits (1104), Expect = 0.0 Identities = 1229/1290 (95%), Gaps = 6/1290 (0%) Strand=Plus/Plus Query 1 ATGGCAGGGGCGGCCTCAGCGCTGTTTCTGCTCGATATCAAAGGTCGTGTTCTCGTGTGG 60 ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct 21 ATGGCAGGGGCGGCCTCAGCGCTGTTTCTGCTCGATATCAAAGGTCGTGTTCTGGTTTGG 80 Query 61 CGCGATTACCGTGGCGATGTCACCGCTGCTCAAGCTGAGCGTTTCTTCACCAAACTCATC 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 81 CGCGATTACCGTGGCGATGTCACCGCTGCTCAAGCTGAGCGTTTCTTCACCAAACTCATC 140 Query 121 GAGACAGAGGGTGATTCACAGTCAAATGATCCGGTTGCTTATGATAATGGCGTGACCTAC 180 |||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||| Sbjct 141 GAGAAAGAGGGTGATTCACAGTCAAATGATCCGGTTGCTTACGATAATGGGGTGACCTAC 200 Query 181 ATGTTTGTACAGCATAGTAACATTTACCTCATGATAGCGTCCAGACAGAACTGTAATGCT 240 ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| Sbjct 201 ATGTTTGTACAGCATAGCAACATTTACCTCATGATAGCGTCCAGGCAGAACTGTAATGCT 260 Query 241 GCCAGTCTTCTCTTCTTCTTGCATCGTGTAGTCGATGTCTTCAAGCATTACTTCGAGGAG 300 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 261 GCCAGTCTTCTCTTCTTCTTGCATCGCGTAGTCGATGTCTTCAAGCATTACTTCGAGGAG 320 Query 301 TTAGAGGAAGAATCTTTGAGAGATAACTTTGTGGTAGTGTATGAGTTACTTGACGAGATG 360 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 321 CTAGAGGAAGAATCTTTGAGAGATAACTTTGTGGTAGTGTATGAGTTACTTGACGAGATG 380 Query 361 ATGGACTTTGGTTACCCTCAGTTTACTGAGGCAAGAATCCTTAGTGAATTCATCAAGACT 420 |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| Sbjct 381 ATGGACTTTGGTTACCCTCAATATACTGAGGCAAGAATCCTTAGTGAATTCATCAAGACT 440 Query 421 GATGCATATAGAATGGAAGTTACACAGAGACCTCCAATGGCTGTCACTAATTCTGTCTCA 480 ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| Sbjct 441 GATGCATATAGAATGGAAGTTACACAGAGACCTCCAATGGCTGTCACAAATGCTGTCTCA 500 Query 481 TGGAGGAGTGAGGGGTTAAAGTTTAAGAAAAACGAAGTTTTCTTGGATGTGATAGAGAGT 540 |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| Sbjct 501 TGGAGGAGTGAGGGGTTACAGTTTAAGAAAAACGAAGTTTTCTTGGATGTAATAGAGAGT 560 Query 541 GTAAATATCCTTGTGAACAGTAATGGGCAAATTGTCAGGTCTGATGTCGTTGGAGCTTTG 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 561 GTAAATATCCTTGTGAACAGTAATGGGCAAATTGTCAGGTCTGATGTCGTTGGAGCGTTG 620 Query 601 AAGATGCGAACATACTTGAGTGGAATGCCAGAGTGTAAGCTAGGCTTGAATGACAGAATA 660 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || Sbjct 621 AAGATGCGAACATACTTGAGTGGAATGCCAGAGTGTAAGCTAGGCTTGAATGATAGAGTA 680 Query 661 TTGTTGGAGGCACAGGGACGAGCAATAAAAGGAAAAGCCATTGATTTGGAGGACATCAAA 720 ||||||||||||||||| |||||| |||||||||||||||||||||||| |||||||| Sbjct 681 CTGTTGGAGGCACAGGGAAGAGCAACAAAAGGAAAAGCCATTGATTTGGAAGACATCAAG 740 Query 721 TTTCATCAGTGTGTTCGATTAGCCCGTTTTGAGAACGACAGGACAATATCATTCATACCA 780 |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| Sbjct 741 TTTCATCAGTGTGTTCGATTAGCCCGTTTTGAGAACGACAGGACTATATCTTTCATACCA 800 Query 781 CCTGATGGATCTTTTGATCTTATGACGTATAGACTCAGTACTCAGGTAAAGCCTCTTATA 840 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 801 CCTGATGGATCTTTTGATCTAATGACGTATAGACTCAGTACTCAGGTAAAGCCTCTTATA 860 Query 841 TGGGTGGAAGCGCATATAGAGAGGCATTCCAGAAGTCGTGTTGAGATGCTAGTAAAAGCT 900 |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 861 TGGGTGGAAGCGCAGATAGAGAGGCATTCCAGAAGTCGTGTTGAAATGCTAGTAAAAGCT 920 Query 901 AGAAGCCAATTCAAGGACAGAAGCTA-TGCAACAAGTGTTGAGATTGAGTTACCTGTACC 959 ||||||||||||||||| |||||| | |||||||| ||||||||||||||| |||||||| Sbjct 921 AGAAGCCAATTCAAGGAAAGAAGC-ACTGCAACAAATGTTGAGATTGAGTTGCCTGTACC 979 Query 960 AACTGATGCGTATAACCCCGATGTAAGAACATCTCTCGGGTCGGCCGCATATGCTCCTGA 1019 ||| ||||| | ||||||| |||||||||||||||| ||||| |||||||||||||| || Sbjct 980 AACCGATGCATCTAACCCCAATGTAAGAACATCTCTTGGGTCTGCCGCATATGCTCCCGA 1039 Query 1020 GAAAGATGCACTGGTCTGGAAGATACAA-TATTTCT-ATGGGAACAAGGAGCATACATTG 1077 |||||||||||||||||||| || ||| | |||| | |||||||||||| ||| ||| Sbjct 1040 AAAAGATGCACTGGTCTGGAAAAT-CAAATCTTTCCCA-GGGAACAAGGAGTATATGTTG 1097 Query 1078 AAAGCAGATTTCCATCTTCCAAGTATAGCCGCAGAGGAAGCAACGCCTGAGCGAAAAGCT 1137 | |||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1098 AGAGCAGAGTTCCATCTTCCAAGTATAACCGCAGAGGAAGCAACGCCTGAGCGAAAAGCT 1157 Query 1138 CCAATCCGTGTCAAATTTGAGATCCCAAAATTCATAGTTTCAGGAATACAGGTTCGATAC 1197 ||||||||||||||||| ||||||||| | |||| ||||||||||||||||||||||||| Sbjct 1158 CCAATCCGTGTCAAATTCGAGATCCCATACTTCACAGTTTCAGGAATACAGGTTCGATAC 1217 Query 1198 CTGAAGATCATTGAGAAGAGTGGGTACCAGGCACATCCATGGGTGAGATATATAACCATG 1257 ||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||| Sbjct 1218 CTGAAGATCATTGAGAAGAGTGGGTACCAAGCTCTTCCATGGGTGAGATATATAACCATG 1277 Query 1258 GCTGGTGAGTACGAACTGAGACTCATGTAA 1287 |||||||||||||||||||||||||||||| Sbjct 1278 GCTGGTGAGTACGAACTGAGACTCATGTAA 1307 > Ahg475254 jgi|Araly1|475254|fgenesh2_kg.2__384__AT1G60780.1 Length=1845 Score = 1541 bits (834), Expect = 0.0 Identities = 1148/1299 (88%), Gaps = 24/1299 (2%) Strand=Plus/Plus Query 1 ATGGCAGGGGCGGCCTCAGCGCTGTTTCTGCTCGATATCAAAGGTCGTGTTCTCGTGTGG 60 |||||||| |||||||| || |||||||||||||||||||| || ||||||||||| ||| Sbjct 255 ATGGCAGGAGCGGCCTCGGCTCTGTTTCTGCTCGATATCAAGGGACGTGTTCTCGTCTGG 314 Query 61 CGCGATTACCGTGGCGATGTCACCGCTGCTCAAGCTGAGCGTTTCTTCACCAAACTCATC 120 || |||||||||||||||||| ||||||||||||| ||||| |||||||| || |||||| Sbjct 315 CGTGATTACCGTGGCGATGTCTCCGCTGCTCAAGCCGAGCGATTCTTCACTAAGCTCATC 374 Query 121 GAGACAGAGGGTGATTCACAGTCAAATGATCCGGTTGCTTATGATAATGGCGTGACCTAC 180 |||| ||||||||||||||||||||||||||| |||||||| |||||||| || || || Sbjct 375 GAGAAAGAGGGTGATTCACAGTCAAATGATCCAGTTGCTTACGATAATGGTGTTACTTAT 434 Query 181 ATGTTTGTACAGCATAGTAACATTTACCTCATGATAGCGTCCAGACAGAACTGTAATGCT 240 ||||||||||| |||||||| | ||| | |||||||| ||||||||||| ||||||||| Sbjct 435 ATGTTTGTACAACATAGTAATGTATACTTGATGATAGCATCCAGACAGAATTGTAATGCT 494 Query 241 GCCAGTCTTCTCTTC-TTCTTGCATCGTGTAGTCGATGTCTTCAAGCATTACTTCGAGGA 299 ||||||||||||||| ||||| || |||||||||||||| |||||||||||||||||||| Sbjct 495 GCCAGTCTTCTCTTCTTTCTT-CACCGTGTAGTCGATGTTTTCAAGCATTACTTCGAGGA 553 Query 300 GTTAGAGGAAGAATCTTTGAGAGATAACTTTGTGGTAGTGTATGAGTTACTTGACGAGAT 359 |||||| || ||||| ||||| |||||||||||||| ||||||||| ||||||||||||| Sbjct 554 GTTAGAAGAGGAATCATTGAGGGATAACTTTGTGGTTGTGTATGAGCTACTTGACGAGAT 613 Query 360 GATGGACTTTGGTTACCCTCAGTTTACTGAGGCAAGAATCCTTAGTGAATTCATCAAGAC 419 ||||||||||||||||||||||| ||| || ||||||||||| |||||||||||||| || Sbjct 614 GATGGACTTTGGTTACCCTCAGTATACCGAAGCAAGAATCCTCAGTGAATTCATCAAAAC 673 Query 420 TGATGCATATAGAATGGAAGTTACACAGAGACCTCCAATGGCTGTCACTAATTCTGTCTC 479 ||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||| Sbjct 674 TGATGCATATAGAATGGAAGTTACACAGAGACCTCCAATGGCTGTGACAAATGCTGTCTC 733 Query 480 ATGGAGGAGTGAGGGGTTAAAGTTTAAGAAAAACGAAGTTTTCTTGGATGTGATAGAGAG 539 |||||||||||||| || ||| |||||||| ||||||||||||||||| || |||| Sbjct 734 CTGGAGGAGTGAGGGAATACAGTACAAGAAAAATGAAGTTTTCTTGGATGTAATTGAGAA 793 Query 540 TGTAAATATCCTTGTGAACAGTAATGGGCAAATTGTCAGGTCTGATGTCGTTGGAGCTTT 599 ||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||| | Sbjct 794 TGTAAATATTCTTGTCAACAGTAATGGGCAAATTGTCAGGTCTGATGTTGTTGGAGCCCT 853 Query 600 GAAGATGCGAACATACTTGAGTGGAATGCCAGAGTGTAAGCTAGG-CTTGAATGACAGAA 658 |||||||||||| ||||||| ||||||||||||||||||| |||| || |||||| ||| Sbjct 854 GAAGATGCGAACTTACTTGACTGGAATGCCAGAGTGTAAGTTAGGACT-GAATGATAGAG 912 Query 659 TATTGTTGGAGGCACAGGGACGAGCAATAAAAGGAAAAGCCATTGATTTGGAGGACATCA 718 ||||| |||| || ||||||||||||| ||| ||||||||||||||||| |||||||||| Sbjct 913 TATTGCTGGAAGCGCAGGGACGAGCAACAAAGGGAAAAGCCATTGATTTAGAGGACATCA 972 Query 719 AATTTCATCAGTGTGTTCGATTAGCCCGTTTTGAGAACGACAGGACAATATCATTCATAC 778 |||||||||||||||||||||| ||||||||||| ||||| ||||| ||||| ||||||| Sbjct 973 AATTTCATCAGTGTGTTCGATTGGCCCGTTTTGAAAACGATAGGACGATATCTTTCATAC 1032 Query 779 CACCTGATGGATCTTTTGATCTTATGACGTATAGACTCAGTACTCAGGTAAAGCCTCTTA 838 |||||||||| |||||||||| ||||| ||||||||||||||||||||||| ||||||| Sbjct 1033 CACCTGATGGGGCTTTTGATCTGATGACATATAGACTCAGTACTCAGGTAAAACCTCTTA 1092 Query 839 TATGGGTGGAAGCGCATATAGAGAGGCATTCCAGAAGTCGTGTTGAGATGCT-AGTAAAA 897 |||||||||||||||| ||||| || |||||||||||||||||||||||||| | ||||| Sbjct 1093 TATGGGTGGAAGCGCAAATAGAAAGTCATTCCAGAAGTCGTGTTGAGATGCTTA-TAAAA 1151 Query 898 GCTAGAAGCCAATTCAAGGA-CAGAAGCTAT-GCAAC-AAGTGTTGAGATTGAGTTACCT 954 |||||||| || |||||||| | ||||| | ||||| || |||||||||||||| ||| Sbjct 1152 GCTAGAAGTCAGTTCAAGGAAC-GAAGC-ACCGCAACGAAC-GTTGAGATTGAGTTGCCT 1208 Query 955 GTACCAACTGATGCGTATAACCCCGAT-GTAAGAACATCTCTCGGGTCGGCCGCATATGC 1013 |||||||| ||||| | ||||||| | || || |||||||| ||||| ||| | ||||| Sbjct 1209 GTACCAACCGATGCATCTAACCCC-ACCGTTAGGACATCTCTAGGGTCTGCCTCTTATGC 1267 Query 1014 TCCTGAGAAAGATGCACTGGTCTGGAAGATACAA-TATTTCTATGGGAACAAGGAGCATA 1072 |||||| |||||||| | |||||||| || ||| | |||| |||||||||||| || Sbjct 1268 TCCTGAAAAAGATGCGTTAGTCTGGAAAAT-CAAATCTTTCCCCGGGAACAAGGAG--TA 1324 Query 1073 CAT-TGAAAG-CAGATTTCCATCTTCCAAGTAT-AGCCGCAGAGGAAGCAACGCCTGAGC 1129 ||| | || | |||| ||||||||||| ||||| | | |||||||||||||| ||||||| Sbjct 1325 CATGTTAAGGGCAGAGTTCCATCTTCCCAGTATTA-CTGCAGAGGAAGCAACACCTGAGC 1383 Query 1130 GAAAAGCTCCAATCCGTGTCAAATTTGAGATCCCAAAATTCA-TAGTTTCAGGAATACAG 1188 |||||||||| ||||||||||||||||||||||| | |||| | |||||||| || ||| Sbjct 1384 GAAAAGCTCCTATCCGTGTCAAATTTGAGATCCCTTATTTCACT-GTTTCAGGGATTCAG 1442 Query 1189 GTTCGATACCTGAAGATCATTGAGAAGAGTGGGTACCAGGCACATCCATGGGTGAGATAT 1248 ||||| ||||| ||||| ||||||||||| |||||||| |||| ||||||||||||||| Sbjct 1443 GTTCGGTACCTAAAGATAATTGAGAAGAGCGGGTACCAAGCACTTCCATGGGTGAGATAC 1502 Query 1249 ATAACCATGGCTGGTGAGTACGAACTGAGACTCATGTAA 1287 |||||||||||||||||||||||||| |||||| ||||| Sbjct 1503 ATAACCATGGCTGGTGAGTACGAACTAAGACTCGTGTAA 1541 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 48111121254 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5