BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G10730.1
Length=1287
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919872 jgi|Araly1|919872|scaffold_101153.1 2039 0.0
Ahg475254 jgi|Araly1|475254|fgenesh2_kg.2__384__AT1G60780.1 1541 0.0
> Ahg919872 jgi|Araly1|919872|scaffold_101153.1
Length=1327
Score = 2039 bits (1104), Expect = 0.0
Identities = 1229/1290 (95%), Gaps = 6/1290 (0%)
Strand=Plus/Plus
Query 1 ATGGCAGGGGCGGCCTCAGCGCTGTTTCTGCTCGATATCAAAGGTCGTGTTCTCGTGTGG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 21 ATGGCAGGGGCGGCCTCAGCGCTGTTTCTGCTCGATATCAAAGGTCGTGTTCTGGTTTGG 80
Query 61 CGCGATTACCGTGGCGATGTCACCGCTGCTCAAGCTGAGCGTTTCTTCACCAAACTCATC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 81 CGCGATTACCGTGGCGATGTCACCGCTGCTCAAGCTGAGCGTTTCTTCACCAAACTCATC 140
Query 121 GAGACAGAGGGTGATTCACAGTCAAATGATCCGGTTGCTTATGATAATGGCGTGACCTAC 180
|||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 141 GAGAAAGAGGGTGATTCACAGTCAAATGATCCGGTTGCTTACGATAATGGGGTGACCTAC 200
Query 181 ATGTTTGTACAGCATAGTAACATTTACCTCATGATAGCGTCCAGACAGAACTGTAATGCT 240
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 201 ATGTTTGTACAGCATAGCAACATTTACCTCATGATAGCGTCCAGGCAGAACTGTAATGCT 260
Query 241 GCCAGTCTTCTCTTCTTCTTGCATCGTGTAGTCGATGTCTTCAAGCATTACTTCGAGGAG 300
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 261 GCCAGTCTTCTCTTCTTCTTGCATCGCGTAGTCGATGTCTTCAAGCATTACTTCGAGGAG 320
Query 301 TTAGAGGAAGAATCTTTGAGAGATAACTTTGTGGTAGTGTATGAGTTACTTGACGAGATG 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 321 CTAGAGGAAGAATCTTTGAGAGATAACTTTGTGGTAGTGTATGAGTTACTTGACGAGATG 380
Query 361 ATGGACTTTGGTTACCCTCAGTTTACTGAGGCAAGAATCCTTAGTGAATTCATCAAGACT 420
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 381 ATGGACTTTGGTTACCCTCAATATACTGAGGCAAGAATCCTTAGTGAATTCATCAAGACT 440
Query 421 GATGCATATAGAATGGAAGTTACACAGAGACCTCCAATGGCTGTCACTAATTCTGTCTCA 480
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 441 GATGCATATAGAATGGAAGTTACACAGAGACCTCCAATGGCTGTCACAAATGCTGTCTCA 500
Query 481 TGGAGGAGTGAGGGGTTAAAGTTTAAGAAAAACGAAGTTTTCTTGGATGTGATAGAGAGT 540
|||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 501 TGGAGGAGTGAGGGGTTACAGTTTAAGAAAAACGAAGTTTTCTTGGATGTAATAGAGAGT 560
Query 541 GTAAATATCCTTGTGAACAGTAATGGGCAAATTGTCAGGTCTGATGTCGTTGGAGCTTTG 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 561 GTAAATATCCTTGTGAACAGTAATGGGCAAATTGTCAGGTCTGATGTCGTTGGAGCGTTG 620
Query 601 AAGATGCGAACATACTTGAGTGGAATGCCAGAGTGTAAGCTAGGCTTGAATGACAGAATA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 621 AAGATGCGAACATACTTGAGTGGAATGCCAGAGTGTAAGCTAGGCTTGAATGATAGAGTA 680
Query 661 TTGTTGGAGGCACAGGGACGAGCAATAAAAGGAAAAGCCATTGATTTGGAGGACATCAAA 720
||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||
Sbjct 681 CTGTTGGAGGCACAGGGAAGAGCAACAAAAGGAAAAGCCATTGATTTGGAAGACATCAAG 740
Query 721 TTTCATCAGTGTGTTCGATTAGCCCGTTTTGAGAACGACAGGACAATATCATTCATACCA 780
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 741 TTTCATCAGTGTGTTCGATTAGCCCGTTTTGAGAACGACAGGACTATATCTTTCATACCA 800
Query 781 CCTGATGGATCTTTTGATCTTATGACGTATAGACTCAGTACTCAGGTAAAGCCTCTTATA 840
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 801 CCTGATGGATCTTTTGATCTAATGACGTATAGACTCAGTACTCAGGTAAAGCCTCTTATA 860
Query 841 TGGGTGGAAGCGCATATAGAGAGGCATTCCAGAAGTCGTGTTGAGATGCTAGTAAAAGCT 900
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 861 TGGGTGGAAGCGCAGATAGAGAGGCATTCCAGAAGTCGTGTTGAAATGCTAGTAAAAGCT 920
Query 901 AGAAGCCAATTCAAGGACAGAAGCTA-TGCAACAAGTGTTGAGATTGAGTTACCTGTACC 959
||||||||||||||||| |||||| | |||||||| ||||||||||||||| ||||||||
Sbjct 921 AGAAGCCAATTCAAGGAAAGAAGC-ACTGCAACAAATGTTGAGATTGAGTTGCCTGTACC 979
Query 960 AACTGATGCGTATAACCCCGATGTAAGAACATCTCTCGGGTCGGCCGCATATGCTCCTGA 1019
||| ||||| | ||||||| |||||||||||||||| ||||| |||||||||||||| ||
Sbjct 980 AACCGATGCATCTAACCCCAATGTAAGAACATCTCTTGGGTCTGCCGCATATGCTCCCGA 1039
Query 1020 GAAAGATGCACTGGTCTGGAAGATACAA-TATTTCT-ATGGGAACAAGGAGCATACATTG 1077
|||||||||||||||||||| || ||| | |||| | |||||||||||| ||| |||
Sbjct 1040 AAAAGATGCACTGGTCTGGAAAAT-CAAATCTTTCCCA-GGGAACAAGGAGTATATGTTG 1097
Query 1078 AAAGCAGATTTCCATCTTCCAAGTATAGCCGCAGAGGAAGCAACGCCTGAGCGAAAAGCT 1137
| |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1098 AGAGCAGAGTTCCATCTTCCAAGTATAACCGCAGAGGAAGCAACGCCTGAGCGAAAAGCT 1157
Query 1138 CCAATCCGTGTCAAATTTGAGATCCCAAAATTCATAGTTTCAGGAATACAGGTTCGATAC 1197
||||||||||||||||| ||||||||| | |||| |||||||||||||||||||||||||
Sbjct 1158 CCAATCCGTGTCAAATTCGAGATCCCATACTTCACAGTTTCAGGAATACAGGTTCGATAC 1217
Query 1198 CTGAAGATCATTGAGAAGAGTGGGTACCAGGCACATCCATGGGTGAGATATATAACCATG 1257
||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||
Sbjct 1218 CTGAAGATCATTGAGAAGAGTGGGTACCAAGCTCTTCCATGGGTGAGATATATAACCATG 1277
Query 1258 GCTGGTGAGTACGAACTGAGACTCATGTAA 1287
||||||||||||||||||||||||||||||
Sbjct 1278 GCTGGTGAGTACGAACTGAGACTCATGTAA 1307
> Ahg475254 jgi|Araly1|475254|fgenesh2_kg.2__384__AT1G60780.1
Length=1845
Score = 1541 bits (834), Expect = 0.0
Identities = 1148/1299 (88%), Gaps = 24/1299 (2%)
Strand=Plus/Plus
Query 1 ATGGCAGGGGCGGCCTCAGCGCTGTTTCTGCTCGATATCAAAGGTCGTGTTCTCGTGTGG 60
|||||||| |||||||| || |||||||||||||||||||| || ||||||||||| |||
Sbjct 255 ATGGCAGGAGCGGCCTCGGCTCTGTTTCTGCTCGATATCAAGGGACGTGTTCTCGTCTGG 314
Query 61 CGCGATTACCGTGGCGATGTCACCGCTGCTCAAGCTGAGCGTTTCTTCACCAAACTCATC 120
|| |||||||||||||||||| ||||||||||||| ||||| |||||||| || ||||||
Sbjct 315 CGTGATTACCGTGGCGATGTCTCCGCTGCTCAAGCCGAGCGATTCTTCACTAAGCTCATC 374
Query 121 GAGACAGAGGGTGATTCACAGTCAAATGATCCGGTTGCTTATGATAATGGCGTGACCTAC 180
|||| ||||||||||||||||||||||||||| |||||||| |||||||| || || ||
Sbjct 375 GAGAAAGAGGGTGATTCACAGTCAAATGATCCAGTTGCTTACGATAATGGTGTTACTTAT 434
Query 181 ATGTTTGTACAGCATAGTAACATTTACCTCATGATAGCGTCCAGACAGAACTGTAATGCT 240
||||||||||| |||||||| | ||| | |||||||| ||||||||||| |||||||||
Sbjct 435 ATGTTTGTACAACATAGTAATGTATACTTGATGATAGCATCCAGACAGAATTGTAATGCT 494
Query 241 GCCAGTCTTCTCTTC-TTCTTGCATCGTGTAGTCGATGTCTTCAAGCATTACTTCGAGGA 299
||||||||||||||| ||||| || |||||||||||||| ||||||||||||||||||||
Sbjct 495 GCCAGTCTTCTCTTCTTTCTT-CACCGTGTAGTCGATGTTTTCAAGCATTACTTCGAGGA 553
Query 300 GTTAGAGGAAGAATCTTTGAGAGATAACTTTGTGGTAGTGTATGAGTTACTTGACGAGAT 359
|||||| || ||||| ||||| |||||||||||||| ||||||||| |||||||||||||
Sbjct 554 GTTAGAAGAGGAATCATTGAGGGATAACTTTGTGGTTGTGTATGAGCTACTTGACGAGAT 613
Query 360 GATGGACTTTGGTTACCCTCAGTTTACTGAGGCAAGAATCCTTAGTGAATTCATCAAGAC 419
||||||||||||||||||||||| ||| || ||||||||||| |||||||||||||| ||
Sbjct 614 GATGGACTTTGGTTACCCTCAGTATACCGAAGCAAGAATCCTCAGTGAATTCATCAAAAC 673
Query 420 TGATGCATATAGAATGGAAGTTACACAGAGACCTCCAATGGCTGTCACTAATTCTGTCTC 479
||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||
Sbjct 674 TGATGCATATAGAATGGAAGTTACACAGAGACCTCCAATGGCTGTGACAAATGCTGTCTC 733
Query 480 ATGGAGGAGTGAGGGGTTAAAGTTTAAGAAAAACGAAGTTTTCTTGGATGTGATAGAGAG 539
|||||||||||||| || ||| |||||||| ||||||||||||||||| || ||||
Sbjct 734 CTGGAGGAGTGAGGGAATACAGTACAAGAAAAATGAAGTTTTCTTGGATGTAATTGAGAA 793
Query 540 TGTAAATATCCTTGTGAACAGTAATGGGCAAATTGTCAGGTCTGATGTCGTTGGAGCTTT 599
||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||| |
Sbjct 794 TGTAAATATTCTTGTCAACAGTAATGGGCAAATTGTCAGGTCTGATGTTGTTGGAGCCCT 853
Query 600 GAAGATGCGAACATACTTGAGTGGAATGCCAGAGTGTAAGCTAGG-CTTGAATGACAGAA 658
|||||||||||| ||||||| ||||||||||||||||||| |||| || |||||| |||
Sbjct 854 GAAGATGCGAACTTACTTGACTGGAATGCCAGAGTGTAAGTTAGGACT-GAATGATAGAG 912
Query 659 TATTGTTGGAGGCACAGGGACGAGCAATAAAAGGAAAAGCCATTGATTTGGAGGACATCA 718
||||| |||| || ||||||||||||| ||| ||||||||||||||||| ||||||||||
Sbjct 913 TATTGCTGGAAGCGCAGGGACGAGCAACAAAGGGAAAAGCCATTGATTTAGAGGACATCA 972
Query 719 AATTTCATCAGTGTGTTCGATTAGCCCGTTTTGAGAACGACAGGACAATATCATTCATAC 778
|||||||||||||||||||||| ||||||||||| ||||| ||||| ||||| |||||||
Sbjct 973 AATTTCATCAGTGTGTTCGATTGGCCCGTTTTGAAAACGATAGGACGATATCTTTCATAC 1032
Query 779 CACCTGATGGATCTTTTGATCTTATGACGTATAGACTCAGTACTCAGGTAAAGCCTCTTA 838
|||||||||| |||||||||| ||||| ||||||||||||||||||||||| |||||||
Sbjct 1033 CACCTGATGGGGCTTTTGATCTGATGACATATAGACTCAGTACTCAGGTAAAACCTCTTA 1092
Query 839 TATGGGTGGAAGCGCATATAGAGAGGCATTCCAGAAGTCGTGTTGAGATGCT-AGTAAAA 897
|||||||||||||||| ||||| || |||||||||||||||||||||||||| | |||||
Sbjct 1093 TATGGGTGGAAGCGCAAATAGAAAGTCATTCCAGAAGTCGTGTTGAGATGCTTA-TAAAA 1151
Query 898 GCTAGAAGCCAATTCAAGGA-CAGAAGCTAT-GCAAC-AAGTGTTGAGATTGAGTTACCT 954
|||||||| || |||||||| | ||||| | ||||| || |||||||||||||| |||
Sbjct 1152 GCTAGAAGTCAGTTCAAGGAAC-GAAGC-ACCGCAACGAAC-GTTGAGATTGAGTTGCCT 1208
Query 955 GTACCAACTGATGCGTATAACCCCGAT-GTAAGAACATCTCTCGGGTCGGCCGCATATGC 1013
|||||||| ||||| | ||||||| | || || |||||||| ||||| ||| | |||||
Sbjct 1209 GTACCAACCGATGCATCTAACCCC-ACCGTTAGGACATCTCTAGGGTCTGCCTCTTATGC 1267
Query 1014 TCCTGAGAAAGATGCACTGGTCTGGAAGATACAA-TATTTCTATGGGAACAAGGAGCATA 1072
|||||| |||||||| | |||||||| || ||| | |||| |||||||||||| ||
Sbjct 1268 TCCTGAAAAAGATGCGTTAGTCTGGAAAAT-CAAATCTTTCCCCGGGAACAAGGAG--TA 1324
Query 1073 CAT-TGAAAG-CAGATTTCCATCTTCCAAGTAT-AGCCGCAGAGGAAGCAACGCCTGAGC 1129
||| | || | |||| ||||||||||| ||||| | | |||||||||||||| |||||||
Sbjct 1325 CATGTTAAGGGCAGAGTTCCATCTTCCCAGTATTA-CTGCAGAGGAAGCAACACCTGAGC 1383
Query 1130 GAAAAGCTCCAATCCGTGTCAAATTTGAGATCCCAAAATTCA-TAGTTTCAGGAATACAG 1188
|||||||||| ||||||||||||||||||||||| | |||| | |||||||| || |||
Sbjct 1384 GAAAAGCTCCTATCCGTGTCAAATTTGAGATCCCTTATTTCACT-GTTTCAGGGATTCAG 1442
Query 1189 GTTCGATACCTGAAGATCATTGAGAAGAGTGGGTACCAGGCACATCCATGGGTGAGATAT 1248
||||| ||||| ||||| ||||||||||| |||||||| |||| |||||||||||||||
Sbjct 1443 GTTCGGTACCTAAAGATAATTGAGAAGAGCGGGTACCAAGCACTTCCATGGGTGAGATAC 1502
Query 1249 ATAACCATGGCTGGTGAGTACGAACTGAGACTCATGTAA 1287
|||||||||||||||||||||||||| |||||| |||||
Sbjct 1503 ATAACCATGGCTGGTGAGTACGAACTAAGACTCGTGTAA 1541
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48111121254
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5