BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G10745.1
Length=249
Score E
Sequences producing significant alignments: (Bits) Value
Ahg312119 jgi|Araly1|312119|fgenesh1_pm.C_scaffold_1000899 411 2e-114
> Ahg312119 jgi|Araly1|312119|fgenesh1_pm.C_scaffold_1000899
Length=249
Score = 411 bits (222), Expect = 2e-114
Identities = 240/249 (96%), Gaps = 0/249 (0%)
Strand=Plus/Plus
Query 1 ATGAAATCACAAACAGTTCTCATCTCCATATTCATCTTCTCTTTCTTTGCTCTACATCAG 60
||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1 ATGAAATCACAAACACTTCTCATCTCGATATTAATCTTCTCTTTCTTTGCTCTACATCAG 60
Query 61 TGCATGCAGATGGATGTTGGAGAAATAGAGGGCTCGAACAAGATCTCTATTGGAAAGTGT 120
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 61 TGCATGCAGATGGATGTTGGAGAAATAGAGGGCTCGAGCAAGATCTCTATTGGAAAGTGT 120
Query 121 GTCCCTGCCCAATGTTCAGTTAGTTTTTTCAAACGGGATTGTTGGTGTTGTTTTAGAGAT 180
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GTCCCTGCCCAATGTGCAGTTAGTTTTTTCAAACGGGATTGTTGGTGTTGTTTTAGAGAT 180
Query 181 CAAAGTATGTGTTCGAAAACCCAAAAAGAATGTGAATCCAATCCCCGTTGTCCTCCTTTA 240
|||| |||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 181 CAAACTATGTGTTCGAAAACCCAAAAAGATTGCGAATCCAATCCCCGTTGTCCTCCTTTA 240
Query 241 AAGTTTTAA 249
||||| |||
Sbjct 241 AAGTTATAA 249
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 8630546986
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5