BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G10745.1 Length=249 Score E Sequences producing significant alignments: (Bits) Value Ahg312119 jgi|Araly1|312119|fgenesh1_pm.C_scaffold_1000899 411 2e-114 > Ahg312119 jgi|Araly1|312119|fgenesh1_pm.C_scaffold_1000899 Length=249 Score = 411 bits (222), Expect = 2e-114 Identities = 240/249 (96%), Gaps = 0/249 (0%) Strand=Plus/Plus Query 1 ATGAAATCACAAACAGTTCTCATCTCCATATTCATCTTCTCTTTCTTTGCTCTACATCAG 60 ||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||| Sbjct 1 ATGAAATCACAAACACTTCTCATCTCGATATTAATCTTCTCTTTCTTTGCTCTACATCAG 60 Query 61 TGCATGCAGATGGATGTTGGAGAAATAGAGGGCTCGAACAAGATCTCTATTGGAAAGTGT 120 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 61 TGCATGCAGATGGATGTTGGAGAAATAGAGGGCTCGAGCAAGATCTCTATTGGAAAGTGT 120 Query 121 GTCCCTGCCCAATGTTCAGTTAGTTTTTTCAAACGGGATTGTTGGTGTTGTTTTAGAGAT 180 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 GTCCCTGCCCAATGTGCAGTTAGTTTTTTCAAACGGGATTGTTGGTGTTGTTTTAGAGAT 180 Query 181 CAAAGTATGTGTTCGAAAACCCAAAAAGAATGTGAATCCAATCCCCGTTGTCCTCCTTTA 240 |||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||| Sbjct 181 CAAACTATGTGTTCGAAAACCCAAAAAGATTGCGAATCCAATCCCCGTTGTCCTCCTTTA 240 Query 241 AAGTTTTAA 249 ||||| ||| Sbjct 241 AAGTTATAA 249 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 8630546986 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5