BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G10747.1
Length=446
Score E
Sequences producing significant alignments: (Bits) Value
Ahg910821 jgi|Araly1|910821|Al_scaffold_0001_1075 292 1e-78
> Ahg910821 jgi|Araly1|910821|Al_scaffold_0001_1075
Length=249
Score = 292 bits (158), Expect = 1e-78
Identities = 221/249 (89%), Gaps = 14/249 (6%)
Strand=Plus/Plus
Query 1 ATGAAATCATCA---CATACATCTCTCATATGCATACTCATGCTCTCTCTCGTCGCTCTA 57
|||||||||||| | |||||||||||| ||||||||||||||||||||| | ||||||
Sbjct 1 ATGAAATCATCATTGCGTACATCTCTCATCTGCATACTCATGCTCTCTCTCTTTGCTCTA 60
Query 58 CATCAATGTGTGAGGATGAAGGTAAAAGAGATAGGAAGGTCGAACAAAATCTATATACCT 117
||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||
Sbjct 61 CATCAATGTGTGAGGATGACGGTAAGAGAGATAGGAAGGTCGAACAAAATCTATATTCCT 120
Query 118 CCATGT-----T-T--CCGTGACAGCT---GCGACCATGTTTTaaaaaaaGACTGTTATT 166
|||||| | | || |||||||| ||||||||||||| |||| |||||||||||
Sbjct 121 CCATGTGACCATGTTTCCATGACAGCTCATGCGACCATGTTTTCAAAAGAGACTGTTATT 180
Query 167 GCTGCGGGTCAAAGCCAGATCTTTGCTGGGAAGACCAACACTATTGCAACACCCATTGTC 226
|||||||| |||| ||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 181 GCTGCGGGACAAAACCAGATCTTTGCTGGGATGATCAACACTATTGCAACACCCATTGTC 240
Query 227 CTCCTCTAA 235
|||||||||
Sbjct 241 CTCCTCTAA 249
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16101658558
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5