BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G10747.1 Length=446 Score E Sequences producing significant alignments: (Bits) Value Ahg910821 jgi|Araly1|910821|Al_scaffold_0001_1075 292 1e-78 > Ahg910821 jgi|Araly1|910821|Al_scaffold_0001_1075 Length=249 Score = 292 bits (158), Expect = 1e-78 Identities = 221/249 (89%), Gaps = 14/249 (6%) Strand=Plus/Plus Query 1 ATGAAATCATCA---CATACATCTCTCATATGCATACTCATGCTCTCTCTCGTCGCTCTA 57 |||||||||||| | |||||||||||| ||||||||||||||||||||| | |||||| Sbjct 1 ATGAAATCATCATTGCGTACATCTCTCATCTGCATACTCATGCTCTCTCTCTTTGCTCTA 60 Query 58 CATCAATGTGTGAGGATGAAGGTAAAAGAGATAGGAAGGTCGAACAAAATCTATATACCT 117 ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||| Sbjct 61 CATCAATGTGTGAGGATGACGGTAAGAGAGATAGGAAGGTCGAACAAAATCTATATTCCT 120 Query 118 CCATGT-----T-T--CCGTGACAGCT---GCGACCATGTTTTaaaaaaaGACTGTTATT 166 |||||| | | || |||||||| ||||||||||||| |||| ||||||||||| Sbjct 121 CCATGTGACCATGTTTCCATGACAGCTCATGCGACCATGTTTTCAAAAGAGACTGTTATT 180 Query 167 GCTGCGGGTCAAAGCCAGATCTTTGCTGGGAAGACCAACACTATTGCAACACCCATTGTC 226 |||||||| |||| ||||||||||||||||| || ||||||||||||||||||||||||| Sbjct 181 GCTGCGGGACAAAACCAGATCTTTGCTGGGATGATCAACACTATTGCAACACCCATTGTC 240 Query 227 CTCCTCTAA 235 ||||||||| Sbjct 241 CTCCTCTAA 249 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 16101658558 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5