BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G10750.1
Length=1747
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919880 jgi|Araly1|919880|scaffold_101161.1 2386 0.0
Ahg359589 jgi|Araly1|359589|fgenesh1_pg.C_scaffold_436000001 63.9 4e-09
> Ahg919880 jgi|Araly1|919880|scaffold_101161.1
Length=1448
Score = 2386 bits (1292), Expect = 0.0
Identities = 1397/1448 (96%), Gaps = 5/1448 (0%)
Strand=Plus/Plus
Query 145 AGAAAACGTTTTGGGCTTTGATGGGAGGTGTGTTCGTGTTGAGGAAACCCAGAAACGGCA 204
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2 AGAAAACGTTTTGGGTTTTAATGGGAGGTGTGTTCGTGTTGAGGAAACCCAGAAACGGCA 61
Query 205 ATAAATGCCGTCGTTTCGATCGATGCATTACAATGAGACAAACGGAAACAGAGTTGTTCT 264
||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 62 ATAAATGCCGTTGTTTCGATCGATGCAATACAATGAGACAAACGGAAACAGAGTTGTTCT 121
Query 265 Cagaagaaacaagaatgagaacaaga-ga--aacaagacgaagaagaagaagCTTCTTCT 321
|||||||||||||||||| ||||||| || || |||| ||| |||||||||||||||||
Sbjct 122 CAGAAGAAACAAGAATGATAACAAGACGAGGAAGAAGAAGAAAAAGAAGAAGCTTCTTCT 181
Query 322 TAGATATGATCCTTCTGTTTCGTACTTGTTCCTCCAACAttcttttcctctctcttcttc 381
|||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 182 TAGATATGATCCTTTTGTTTCGTACTTGTTCCCCCAACATTCTCTTCCTCTCTCTTCTTC 241
Query 382 tcttgtcttcttctttttcctctgtcttgtccgagaatctctcACCTAGAAACCAAACTC 441
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 242 TCTTGTCTTCTTCTTTTTCCTCTGTCTTGTCCGAGAATCTCTCACCGAAAAACCAAACTC 301
Query 442 TCAGGCCACTCGATGAGCTTAATAAGCTCAAAGCCATTAATCAACATCTCAGGAAGATCA 501
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 TCAGGCCACTCGAGGAGCTTAATAAGCTCAAAGCCATTAATCAACATCTCAGGAAGATCA 361
Query 502 ATAAACCTTCAATTAAGACAATTCATAGCCCCGATGGAGACATCATAGACTGTGTTTTAT 561
||||||||||||| |||||||||||||| || ||||| ||||||||||||||||||||||
Sbjct 362 ATAAACCTTCAATCAAGACAATTCATAGTCCTGATGGTGACATCATAGACTGTGTTTTAT 421
Query 562 TACATCACCAACCAGCATTTGATCATCCCAGCTTAAGAGGACAGAAGCCACTGGATCCTC 621
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 422 TACATCACCAACCAGCATTTGATCATCCCAGATTAAGAGGACAGAAGCCACTGGATCCTC 481
Query 622 CAGAGAGGCCAAGAGGGCATAACAGGAGAGGATTGAGACCGAAGAGCTTCCAGTTATGGG 681
| |||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 482 CTGAGAGGCCAAAAGGGCATAACAGGAGAGGATTGAGACCAAAGAGTTTCCAGTTATGGG 541
Query 682 GAATGGAGGGGGAGACATGTCCTGAGGGAACAGTCCCTATCAGAAGAACAAAAGAAGAAG 741
|||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 542 GAATGGAGGGAGAGACATGTTCTGAAGGAACAGTCCCTATCAGAAGAACAAAAGAAGAAG 601
Query 742 ACATTCTCAGAGCAAACTCTGTTTCTAGCTTTGGCAAGAAACTCAGACATTACAGAAGAG 801
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 602 ACATTCTCAGAGCAAACTCTGTTACTAGCTTTGGCAAGAAACTCAGACATTACAGAAGAG 661
Query 802 ACACTAGCAGTAATGGGCATGAACACGCGGTGGGATACGTGAGCGGAGAGAAATACTATG 861
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 662 ACACTAGCAGTAATGGCCATGAACACGCGGTGGGATACGTGAGCGGAGAGAAATACTATG 721
Query 862 GTGCTAAAGCAAGCATCAATGTTTGGGCTCCACAAGTTCAGAACCAATACGAATTTAGTT 921
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 722 GTGCTAAAGCAAGCATCAATGTTTGGGCTCCACAAGTGCAGAACCAATACGAATTTAGTC 781
Query 922 TATCTCAGATTTGGATTATCTCTGGTTCCTTTGGCAATGATCTCAACACCATTGAAGCTG 981
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 782 TATCTCAGATTTGGATTATCTCTGGTTCCTTTGGTAATGACCTCAACACCATTGAAGCTG 841
Query 982 GTTGGCAGGTGAGTCCAGAGCTCTATGGAGATAATTACCCAAGATTCTTTACTTACTGGA 1041
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 842 GCTGGCAGGTGAGTCCAGAGCTCTATGGAGATAATTACCCAAGATTCTTTACTTACTGGA 901
Query 1042 CTAACGATGCATATCAAGCAACAGGTTGCTACAATCTCTTGTGTTCCGGTTTTGTCCAAA 1101
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 902 CTAACGATGCATATCAAGCAACCGGTTGCTACAATCTCTTGTGTTCCGGTTTTGTCCAAA 961
Query 1102 CCAATAGTGAGATTGCGATTGGAGCTGCCATCTCTCCCTCGTCTTCATACAAGGGTGGAC 1161
|||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||
Sbjct 962 CCAATAGTGAGATTGCGATTGGAGCTGCAATCTCTCCATCGTCTTCCTACAAGGGTGGAC 1021
Query 1162 AATTCGATATTACTCTGCTTATTTGGAAGGATCCGAAGCATGGGAATTGGTGGCTGGAAT 1221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1022 AATTCGATATTACTCTGCTTATTTGGAAGGATCCGAAGCATGGGAATTGGTGGCTGGAAT 1081
Query 1222 TCGGGTCGGGTATTCTAGTCGGGTATTGGCCATCGTTCTTGTTCACACACCTGAAGGAGC 1281
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1082 TCGGGTCGGGTATTCTAGTTGGGTATTGGCCATCGTTTTTGTTCACACACCTGAAGGAGC 1141
Query 1282 ACGCAAGCATGGTCCAATACGGTGGCGAAATCGTAAATTCGAGTCCTTTTGGAGCCCATA 1341
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1142 ACGCAAGCATGGTCCAATACGGTGGTGAAATCGTAAATTCGAGTCCTTTTGGAGCCCATA 1201
Query 1342 CTTCAACACAGATGGGAAGTGGGCATTTTGCAGAGGAAGGGTTTACAAAATCTTCTTATT 1401
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1202 CTTCAACACAAATGGGAAGTGGACATTTTGCAGAGGAAGGGTTTACAAAATCTTCTTATT 1261
Query 1402 TCAGAAACATCCAAGTAGTTGATTGGGATAACAATTTGGTCCCTTCTCCTAATCTTCGAG 1461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1262 TCAGAAACATCCAAGTAGTTGATTGGGATAACAATTTGGTCCCTTCTCCTAATCTTCGAG 1321
Query 1462 TACTTGCGGATCATCCGAATTGTTACGATATTCAAGGTGGGTCTAATAGGGCTTGGGGGA 1521
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1322 TACTTGCGGATCATCCGAATTGTTACGATATTCAAGGTGGGTCTAATCGGGCTTGGGGGA 1381
Query 1522 GTTATTTTTATTACGGAGGACCAGGGAAAAATCCTAAATGCCCTTAAAGAAAAAAT-TAA 1580
||||||||||||| || ||||||||||| ||||||||||||||||||||||||| | |||
Sbjct 1382 GTTATTTTTATTATGGTGGACCAGGGAAGAATCCTAAATGCCCTTAAAGAAAAA-TCTAA 1440
Query 1581 TTAGGGTT 1588
||||||||
Sbjct 1441 TTAGGGTT 1448
> Ahg359589 jgi|Araly1|359589|fgenesh1_pg.C_scaffold_436000001
Length=405
Score = 63.9 bits (34), Expect = 4e-09
Identities = 34/34 (100%), Gaps = 0/34 (0%)
Strand=Plus/Plus
Query 1353 ATGGGAAGTGGGCATTTTGCAGAGGAAGGGTTTA 1386
||||||||||||||||||||||||||||||||||
Sbjct 307 ATGGGAAGTGGGCATTTTGCAGAGGAAGGGTTTA 340
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65553311645
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5