BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G10770.1
Length=779
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471212 jgi|Araly1|471212|fgenesh2_kg.1__1166__AT1G10770.1 1164 0.0
> Ahg471212 jgi|Araly1|471212|fgenesh2_kg.1__1166__AT1G10770.1
Length=769
Score = 1164 bits (630), Expect = 0.0
Identities = 729/775 (94%), Gaps = 13/775 (2%)
Strand=Plus/Plus
Query 1 CTGGTGATAATTTCTTCTCAATTCAAATACATAAATAAATATCAATAAAATGGCGGGCCG 60
|||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 1 CTGGTGCTAATTTCTTCTCAATTCAAATACATAAATAAATATTAATCAAATGGCGGGCCG 60
Query 61 CGACACATTCCAGCTGCGTTTTGCAGCAGTCGCGGCATCCGCCGCCGTATTGATCTTTCT 120
||||||||||||||||||||| || || |||||||||||||| |||||||||||||||||
Sbjct 61 CGACACATTCCAGCTGCGTTTCGCGGCTGTCGCGGCATCCGCTGCCGTATTGATCTTTCT 120
Query 121 CATGGCTGGTCAAGTCGCGGAGTCGCGTATGATCAATATCTGCTCTCACACCGCGTATCC 180
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 121 CATGGCTGGTCAAGTCGCGGAGTCGCGTATGATCAACCTCTGCTCTCACACCGCGTATCC 180
Query 181 ATCTTTGTGCCGACCTCTGGTGAAACGTGTCACGAGCCCTAGAAAAGCCACGCACCGAAC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ATCTTTGTGCCGACCTCTGGTGAAACGTGTCACGAGCCCTAGAAAAGCCACGCACCGAAC 240
Query 241 CATCCAAGCTTTGGAGGCTAAGACGAAACTAGCTCTAGCCGAAACAGCTAGGTTCAAAAA 300
|||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 241 CATCCAGGCTTTGGAGGCTAAGACCAAACTAGCTCTAGCCGAAGCAGCTAGGTTCAAAAA 300
Query 301 CGGTAACCAAGCGGTCAGCACGTGTTACGAGACATTGGGCGACGCGGTTTACAATTTGGC 360
|||||||||||||||| |||||||||||||||| || |||| |||||||||||||||||
Sbjct 301 TGGTAACCAAGCGGTCAACACGTGTTACGAGACACTGAGCGATGCGGTTTACAATTTGGC 360
Query 361 AAGCGCGAGAAAGAGCATAAGGAAACGTGATGTGCCGGCGATGAACACGTATCTAACTGC 420
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 361 GAGCGCGAGAAAGAGCATAAGGAAACGCAATGTGCCGGCGATGAACACGTATCTAACTGC 420
Query 421 GGCTGTGTCTGATTACGGTGCATGTGTGGACGGGTTCATTGAAACACAACAGGTTAATGC 480
||| |||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 421 GGCAGTGTCTGATTACGGTGCATGTGTGGACGGGTTTATTGAAACACGTCAGGTTAATGC 480
Query 481 GATCCAAAATGCAGTGGTTGACTTGAGAAAAATTAGCAGCAATTGCTTGGCGTTGTCTAC 540
|||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 481 GATCCAGAATGCAGTGGTTGACTTGAGAAAAATTAGCAGCAATTGCTTGACGTTGTCTAC 540
Query 541 ATTGATTAGATGATCGATTTAAGAGAACAATTGAT--Ttaatttttctcaaaacaaaaac 598
||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||
Sbjct 541 ATTGATTAGATGATCGATTTAAGAGAACATTTGATGATTATTTTTTCTCAAAACAAAAAC 600
Query 599 taattaattgaagaaataaaaaa--tctcaagcaa-tt-aaaatttgggtttctttttgt 654
||||||||||||||||||||||| ||| || ||| || |||||||||||||||||||||
Sbjct 601 TAATTAATTGAAGAAATAAAAAAAATCTTAA-CAAATTTAAAATTTGGGTTTCTTTTTGT 659
Query 655 tgtttttgttttgagagaga-tgtttgttgttgATCCATCATTCGTATGTAACGCCACTG 713
||||||||||||| |||| | ||||||||| |||||||||||||||||||||||||||
Sbjct 660 TGTTTTTGTTTTGGGAGA-ACTGTTTGTTG---ATCCATCATTCGTATGTAACGCCACTG 715
Query 714 GGTGTAACTAATTATATTTGAATTTCGTGTAATTAATAATCGCTAGTAGATTTTT 768
||||||| ||||||||||| | |||||||||||||||||||||||| ||||||||
Sbjct 716 GGTGTAATTAATTATATTTCA-TTTCGTGTAATTAATAATCGCTAGAAGATTTTT 769
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28744679418
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5