BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G10780.1
Length=1470
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471213 jgi|Araly1|471213|fgenesh2_kg.1__1167__AT1G10780.1 2158 0.0
> Ahg471213 jgi|Araly1|471213|fgenesh2_kg.1__1167__AT1G10780.1
Length=1422
Score = 2158 bits (1168), Expect = 0.0
Identities = 1342/1425 (94%), Gaps = 15/1425 (1%)
Strand=Plus/Plus
Query 49 CACAAGATTCTAGTTCGACCCAGA-TT----CATTCATCAAATGGACTCTCTTCCTGATG 103
||||||||||||| |||||||||| || ||||| ||||||||||||||||||||||
Sbjct 1 CACAAGATTCTAGGTCGACCCAGATTTAAGAGATTCACCAAATGGACTCTCTTCCTGATG 60
Query 104 CGATCCTTCAATACATTCTTTCCTACCTGACTTCTGCAAGGGATGTGGCTGCTTGCAACT 163
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 61 CGATCCTTCAATACATTCTTTCCAACCTGACTGCTGCAAGGGATGTGGCTGCTTGCAACT 120
Query 164 GTGTCTCCAAGCGATGGAAAGAGTCTACAGACTCTGTTAAGAGCGTTGTTTTCCACAGGA 223
|||| |||||||||||||||||||| ||||||||||||| |||| |||| |||| | |||
Sbjct 121 GTGTTTCCAAGCGATGGAAAGAGTCAACAGACTCTGTTACGAGCATTGTATTCCCCCGGA 180
Query 224 ATTCATTCGAAAGCATCATGGAGACTGATGATTCTGACTCCATCGTTCGGAAGATGATCT 283
|||| |||||||||||||| ||||||||| |||||||| |||||||||||||||||||||
Sbjct 181 ATTCTTTCGAAAGCATCATCGAGACTGATCATTCTGACACCATCGTTCGGAAGATGATCT 240
Query 284 CTTCTTCTCGTCGTCTTGAGGAGCTTGTGGTGTATAGCCCATTCACTAGC-AGCGGCCTA 342
|||||||||||||||||||| ||||||||||||||||||||||||||||| || ||| ||
Sbjct 241 CTTCTTCTCGTCGTCTTGAGAAGCTTGTGGTGTATAGCCCATTCACTAGCAAG-GGCTTA 299
Query 343 GCATCTTGGATGATGCATGTGAGTTCATCTCTAAGGCTATTGGAGTTAAGAATGGATAAT 402
|||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||
Sbjct 300 GCATCTTGGATGATGCATGTCAGTTCATCTCTTAGGCTATTGGAGCTAAGAATGGATAAT 359
Query 403 CTCGCTAGCGAGGAGGTTGTTGTCGAAGGCCCTTTGAAGCTTGATTGCATTGGTGTGGCC 462
||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 360 CTCGCTAGCGAAGAGGTTATTGTAGAAGGCCCTTTGAAGCTTGATTGCATTGGTGTGGCC 419
Query 463 AAGAATTTGGAGATTTTGAAGCTTTGGGGTGTTTTAATGATGAGCCCTCCTAAGTGGGAT 522
||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 420 AAGAATTTGGAGACTTTGAGGCTTTGGGGTGTTTTAATGATGAGCCCTCCCAAGTGGGAT 479
Query 523 ATGTTCCCAAACCTTCGAAGCCTCGAAATAGTGGGAGCAAAAATGGATGATTCCTCACTG 582
||||||||||||||||| ||||||||||||| ||||||| || |||||||||| |||||
Sbjct 480 ATGTTCCCAAACCTTCGCTGCCTCGAAATAGTAGGAGCAAGAACGGATGATTCCGCACTG 539
Query 583 TCTCATGCTCTTCGTGCATGCCCGAATCTGAGTAACTTGCTTCTACTAGCTTGTGAGGGA 642
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TGTCATGCTCTTCGTGCATGCCCGAATCTGAGTAACTTGCTTCTACTAGCTTGTGAGGGA 599
Query 643 GTTAAATCCATATCAATCGATCTGCCATACTTGGAGCACTGTAAGCTGGATTTCTATGGA 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GTTAAATCCATATCAATCGATCTGCCATACTTGGAGCACTGTAAGCTGGATTTCTATGGA 659
Query 703 CAAGGTAACACCTTGCTAGTCCTCACGAGTCAGAGATTAGTGTCCCTTGATGTTCAAGGT 762
| |||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 660 CCAGGTAACAGCTTGCTAGCCCTCACGAGTCCGAGATTAGTGTCCCTTGATGTTCAAGGC 719
Query 763 TGTAGCTGGATTCGTGTCCCTGAAACCAAATTCTTAAAGAACCTATCCATCTCCAGTGTT 822
||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 720 TGTAGCTGGATCCGTGTCCCTGATACCAGATTCTTAAAGAACCTATCCATCTCCAGTGTT 779
Query 823 --A-CTGGGAGAGTTTACATGGTAGATTTCAATAATCTTTCATCGCTTGAGGCCTTGTCG 879
| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TCAACAGGGAGAGTCTACATGGTAGATTTCAATAATCTTTCATCGCTTGAGGCCTTGTCA 839
Query 880 ATTCGAGGTGTACAATGGTGTTGGGATGCAATATGCATGATACTGCAGCAAGCAAGAGAC 939
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 840 ATTCGAGGTGTGCAATGGTGTTGGGATGCGATATGCATGATACTGCAGCAAGCAAGAGAC 899
Query 940 GTGAAGCATCTCTTTATGAAGGTTGAATTCACAGGCAATGAGGCTCTTCAACCTTTCCCT 999
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 900 GTGAAGCATCTCTTTATGAAGGTCGAATTCACAGGCAATGAGGCTCTTCAACCTTTCCCT 959
Query 1000 GAGATTGATTTTGTCGAGTTCTTCAATAACCATCCAAAGCTTCAAACATTCGACATCCAT 1059
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 960 GAGATTGATTTTGTCGAGTTCTTCAATAACCATCCAAAGCTTCAAACATTTGACATCCAT 1019
Query 1060 GGAGCAATGTTCGCTGCACTCTGCCAGAAAAACAGCCTTAAGAAGCTTGAGACCGGATTT 1119
||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1020 GGAGCAATGTTTGCTGCACTTTGCCAGAAAAACAGCCTTAAGAAGCTTGAGACAGGATTT 1079
Query 1120 ACAATACCGTGTTTGGAGGAGGTTGTTATCACAGTGAGATCTCCACTGAACGCAGAACAG 1179
||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 GCAATACCGTATTTGGAAGAGGTTGTTATCACAGTGAGATCTCCACTGAACGCAGAACAG 1139
Query 1180 AAGATGAACACGCTTGAATCACTAGTGAAATACGCGAGAGGTCTGAAACGAATGGTGATA 1239
||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 1140 AAGATGAACACGCTTGAATCACTTTTGAAATACGCAAGAGGTCTGAAACGAATGGTGATA 1199
Query 1240 AGGATTCTCCGGATGAAGAGCAATCACAGCAGTGCAGATGATTTCTGCGATGATATCTGC 1299
|||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1200 AGGATTCTTCAGATGAAGAGCAATCACAGCAGTGCAGATGATTTCTGTGATGATATCTGC 1259
Query 1300 AAGTTCCGGCACATGAACGAGCATCTTGTTCATATAGAATGAAATAATTTT-TTGCTGCT 1358
|||||||||||||||||||||||||||||||| ||||||||| ||| |||| ||||||||
Sbjct 1260 AAGTTCCGGCACATGAACGAGCATCTTGTTCAAATAGAATGATATA-TTTTCTTGCTGCT 1318
Query 1359 AATCTTATTTT-CAGCCATTTGATTTCTGTTTCTCTTTCTGGTCGCTGAGCATTTCTTA- 1416
||||| ||||| || |||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 1319 AATCT-ATTTTTCACCCATTTGATTTCTGTTTCTCATTCTGGTAGCTGAGCATTTCTTAA 1377
Query 1417 TATTGAACTCTTGAGTAATTGTTGTTTCCTGATTCATGGTTATGA 1461
| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1378 TTTTGAACTCTTGAGTAATTTTTGTTTCCTGATTCATGGTTATGA 1422
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55002313780
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5