BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G10790.1
Length=1011
Score E
Sequences producing significant alignments: (Bits) Value
Ahg312123 jgi|Araly1|312123|fgenesh1_pm.C_scaffold_1000903 1439 0.0
> Ahg312123 jgi|Araly1|312123|fgenesh1_pm.C_scaffold_1000903
Length=993
Score = 1439 bits (779), Expect = 0.0
Identities = 929/1000 (93%), Gaps = 16/1000 (2%)
Strand=Plus/Plus
Query 1 ATGAAAAAGCACTCAAAGGAGAACGCTCTCGCTCTTCAGCAGGAGACTCTCGACCTTGAG 60
||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1 ATGAAAAAGCAGTCGAAGGAGAACGCTCTCGCTCTTCAGCAGGAGAATCTCGACCTTGAG 60
Query 61 AACCCTGAATCCTCTCCTCGTTCCTCC---GGCCGGAGCTGTTCCTCTGCTTTCTCGCGT 117
||||||||| ||| | |||| |||||| || ||||||||||||||||||||||| |||
Sbjct 61 AACCCTGAA-CCT-T-CTCGATCCTCCGGTGGTCGGAGCTGTTCCTCTGCTTTCTCTCGT 117
Query 118 CTGGTTGGTCTCCGATGTCTCATCGTTTTGGTCCTAAGCTGTGCGATTCTTCTCTCTGCG 177
|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 CTCGTTGGTTTCCGATGTCTCATCGTTTTGGTCCTAAGCTGTGCGATTCTTCTCTCTGCG 177
Query 178 ATCTTCTGGCTATTCCCTCGTCGATCGGTGTCTGAATTCAAAGCTGATGGGACAGTTAAA 237
||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 ATCTTCTGGCTGTTTCCGCGTCGATCGGTGTCTGAATTCAAAGCTGATGGGACAGTTAAA 237
Query 238 CTCAATGCTTCAGTACAAGCATCCTTTAGACTTCAAAAACCAGTTTCTGAAGTTGTT-CG 296
|||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |
Sbjct 238 CTCAATGCTTCAGTACAAGCTTCCTTTAGACTTAAAAAACCAGTTTCTGAAGTTGTTTC- 296
Query 297 CCATAAAGGAAAGA-TAGAGCATGATATCCTTCGGAGCATAGGTCTTTCGAACAACAGCA 355
|||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 297 CCATAAAGGAAA-ACTAGAGCATGATATCCTTCGGAGCATAGGTCTTTCGAACAGCAGCA 355
Query 356 AGGTGACTGTTCTGTCTCTGAATCAATCAGGTGCATCTAACTACACAGACGTGGAGTTTG 415
|||||||| | |||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 356 AGGTGACTATACTGTCTCTGAATCAATCAGGTGCATCAAACTACACAGATGTGGAGTTTG 415
Query 416 CAGTTCTTCCTGTCCCTCCTGACCATGAAATAAGCAAACACTCGTTAAGCTTACTGCGAT 475
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 416 CAGTTCTTCCTGTCCCTCCTGACCATGAAATAAGCAATCACTCGTTAAGCTTACTGCGAT 475
Query 476 CGTCTTTTGTTAAGCTGTTTGCTAAAAGATCGAAGCTGAAACTCACCACATCAGGTTTCG 535
| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 476 CATCTTTTGTTAAGCTGTTTGCTAAAAGATCGAAGCTGAAACTCACCACAAAAGGTTTCG 535
Query 536 GGAAGCCAACTTCTTTTCAGGTTTTGAAATTTCCTGGAGGAATAACTGTAGATCCACTGG 595
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 536 GGAAGCCAACTTCTTTTCAGGTTTTGAAATTTCCTGGGGGAATAACTGTAGATCCACTGG 595
Query 596 AACCTG-CACCTGTCTCTGGAGTAGCACTGGTTCTGTTTAGTGTTACTATCAAAACTTCG 654
| ||| | |||| ||||||| ||||| |||||||||||| | ||||||||||| ||||
Sbjct 596 AGCCTATC-CCTGCCTCTGGACTAGCAATGGTTCTGTTTACCGGTACTATCAAAATTTCG 654
Query 655 ATATCAACAG-TACAAGATAG-GCTGGATCTGCTAAATGGTCTATTTGAGCATATGTTGT 712
||||| | || |||||||||| | |||||| ||||||||||| | ||||||||||||||
Sbjct 655 ATATCTA-AGGTACAAGATAGAG-TGGATCAGCTAAATGGTCAACTTGAGCATATGTTGA 712
Query 713 CTTTGGAGCCATATGAGAGTGTTCATTTCCAACTCACAAATAAACAAGGATCTACCATAT 772
||||| || |||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 713 GTTTGGGGCTATATGAGAGTATTCATTTCCAATTCACAAATAAACAAGGATCTACCATAT 772
Query 773 CACCACCGCTAACTTTTCAGGTTTATGTTGCTTTCACCATGAGAAAATATCTTCATCAGA 832
|||||||| ||||| ||||||||| |||||||||||||||||||| | ||||||| ||||
Sbjct 773 CACCACCGGTAACTCTTCAGGTTTGTGTTGCTTTCACCATGAGAAGACATCTTCAGCAGA 832
Query 833 GATTGAACCATTTTACTCAGATCATTCAAACATCCCGTGCTAAAAATCTCGGTCTAGACG 892
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 833 GATTGGACCATTTTGCTCAGATCATTCAAACATCCCGTGCTAAAAATCTCGGTCTAGACG 892
Query 893 AGGCAGTTTTTGGTGAAGTCAAGGATATAACTTTCTCAACATACCTGGATGGCAAAGTTC 952
||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 893 AGGCAGTTTTTGGAGAAGTCAAGAATATAACTTTCTCAACATACCCGGATGGCAAAGTTC 952
Query 953 CTGATTCTGATTTGGAATTGGCACCAGCGCCAACTCCTTG 992
|||||||||||||||||||||||||||||||| ||||||
Sbjct 953 TTGATTCTGATTTGGAATTGGCACCAGCGCCAAATCCTTG 992
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37589196162
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5