BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G10800.1

Length=434
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg919885 jgi|Araly1|919885|scaffold_101166.1                        560    3e-159


> Ahg919885 jgi|Araly1|919885|scaffold_101166.1
Length=412

 Score =  560 bits (303),  Expect = 3e-159
 Identities = 347/369 (94%), Gaps = 0/369 (0%)
 Strand=Plus/Plus

Query  58   GCATTCTCGCCGTTAAATCCATGGCTCTGGTTGTTGCTATGGGGAAGTCATTCTTCAAAC  117
            |||||||||| ||||||||||||||||||| |||||||||||| || || ||||||| ||
Sbjct  1    GCATTCTCGCTGTTAAATCCATGGCTCTGGCTGTTGCTATGGGTAAATCGTTCTTCATAC  60

Query  118  AACCTGGATGTGTAATGGATGGTACTCTTGCGATTGTAGCTCTGATTCTCCAGGTTCTTC  177
            ||||||| ||||||||||||||| | ||||||||||||||||||||||||||||| ||||
Sbjct  61   AACCTGGTTGTGTAATGGATGGTGCACTTGCGATTGTAGCTCTGATTCTCCAGGTGCTTC  120

Query  178  TTGAGAAGAAAGGAACCGGGTTCATCGTGGTGGTGAGCTTGTGGCGGGTTCTGCGGGTTG  237
            |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct  121  TTGAGAAGAAAGGAACCGGGTTCATCGTGGTGGTAAGCTTGTGGCGGGTTCTGAGGGTTG  180

Query  238  TGGAGACTGCATTTGAACTTAGTGATGAAGCCATTGAAGTGCAGATAGATGGAATCATCA  297
            | |||||||| ||||| |||||||||||||||||||||||  ||||||||||||||||||
Sbjct  181  TAGAGACTGCGTTTGAGCTTAGTGATGAAGCCATTGAAGTAAAGATAGATGGAATCATCA  240

Query  298  GCCAGTTTCAAGCTCTTAGTAAAGAGAATAGAACATTGCTGGAGACTCTTGCAGAGAAAG  357
            |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  241  GCCAGTTTCAAGCTCTTAGTAAAGAGAATAGAACATTGCTAGAGACTCTTGCAGAGAAAG  300

Query  358  ATGAAGTAATTAAGATGCTAGAGGAAGAGCTTAATCGATTCAAAGAAAACGGTGATATTC  417
            ||||||||||||||||||||||||||||||| || |||||||||||||| || |||||||
Sbjct  301  ATGAAGTAATTAAGATGCTAGAGGAAGAGCTAAACCGATTCAAAGAAAATGGCGATATTC  360

Query  418  CATTTGTGA  426
            |||||||||
Sbjct  361  CATTTGTGA  369



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15643791490


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5