BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G10810.1
Length=1253
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919886 jgi|Araly1|919886|scaffold_101167.1 1061 0.0
Ahg924983 jgi|Araly1|924983|scaffold_200544.1 665 0.0
Ahg475260 jgi|Araly1|475260|fgenesh2_kg.2__390__AT1G60710.1 651 0.0
Ahg475262 jgi|Araly1|475262|fgenesh2_kg.2__392__AT1G60680.1 580 6e-165
> Ahg919886 jgi|Araly1|919886|scaffold_101167.1
Length=1037
Score = 1061 bits (574), Expect = 0.0
Identities = 631/659 (96%), Gaps = 2/659 (0%)
Strand=Plus/Plus
Query 491 GATCGATACCACTGTCCCCATTGAAGTCACTATTGGAGAACTGAAGAAGCTAGTTGAAGA 550
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 375 GATCGATACCACTGTCCCCATTGAAGTCACTATTGGAGAACTAAAGAAGCTAGTTGAAGA 434
Query 551 GGGTAAGATAAAGTACATTGGTTTGTCTGAAGCCTGTGCCTCGACTATAAGAAGAGCCCA 610
||||||||||||||||||||||||||| ||||||| |||||| |||||||| |||||||
Sbjct 435 GGGTAAGATAAAGTACATTGGTTTGTCCGAAGCCTCTGCCTCAACTATAAGGCGAGCCCA 494
Query 611 TGCTGTTCACCCGCTAACCGCTGTGCAGTTGGAATGGTCTTTATGGTCGAGAGACGTTGA 670
|||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||
Sbjct 495 TGCTGTTCACCCGCTAACAGCCGTGCAGTTGGAATGGTCTTTGTGGTCGAGAGACGTTGA 554
Query 671 AGAAGACATCATTCCTACTTGCAGGGAGCTCGGGATTGGAATTGTAGCTTACAGTCCTCT 730
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 555 AGAAGACATCATTCCTACTTGCAGGGAACTCGGGATTGGAATTGTAGCTTATAGTCCTCT 614
Query 731 GGGACTGGGG-TTCTTTGCTGCAGGACCAAAATTCATTGAGAGTATGGACAATGGTGACT 789
||||| |||| |||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 615 GGGAC-GGGGCTTCTTTGCTGCAGGACCAAAGTTCATTGAGAATATGGACAATGGTGACT 673
Query 790 ACAGAAAGGGTTTACCGAGATTCCAGCAAGAGAACTTAGACCACAACAAGATTCTCTATG 849
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 674 ACAGAAAGGGTTTACCGAGATTCCAGCAAGAGAACCTAGACCACAACAAGATTCTCTATG 733
Query 850 AGAAGGTCAATGCAATGGCAGAGAAGAAAAGCTGTACTCCTGCACAATTAGCTTTGGCAT 909
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 734 AGAAGGTCAATGCAATGGCAGAGAAGAAAAGCTGTACTCCTGCACAATTAGCTTTGGCAT 793
Query 910 GGGTTCATCACCAAGGAAATGATGTCTGCCCAATCCCAGGAACCTCTAAGATCAAAAACC 969
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 794 GGGTTCATCACCAAGGAAATGATGTCTGCCCAATCCCAGGAACCTCCAAGATCAAAAACC 853
Query 970 TTAATCAGAACATAGGAGCTTTATCTGTGAAACTCAGTATCGAAGAGATGGCCGAGCTTG 1029
|| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 854 TTGATCAGAACATAGGAGCTTTATCTGTCAAACTCACTATCGAAGAGATGGCCGAGCTTG 913
Query 1030 ACGCCATGGGACATCCCGATTCTGTGAAAGGGGAAAGGTCAGCCACCTATATAGTTACTT 1089
|||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||| |
Sbjct 914 ACGCCATGGGACATCCGGATTCTGTGAAAGGGGAAAGCTCACCCACCTATATAGTTACCT 973
Query 1090 ACAAGAATTCTGAAACTCCACCACTGTCTTCTTGGACTTCATAAACCATCTGTAATAGT 1148
|||||||||| |||||||||||| |||||||||||||||||||||||| |||| |||||
Sbjct 974 ACAAGAATTCCGAAACTCCACCATTGTCTTCTTGGACTTCATAAACCAGCTGTTATAGT 1032
Score = 534 bits (289), Expect = 5e-151
Identities = 345/371 (93%), Gaps = 7/371 (2%)
Strand=Plus/Plus
Query 85 AGAGATTTGAATCCATGGCAGCTGCAAGTGGAGTGCGTAGGATCAAGCTAGGAAGCCAAG 144
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 8 AGAGATTTGAATCCATGGCGGCTGCAAGTGGAGTGCGTAGGATCAAGCTAGGAAGCCAAG 67
Query 145 GTCTTGAAGTGTCAGCGCAAGGTCTTGGTTGTATGGGACTTTCCATCTTCGATGGAACTA 204
||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 68 GTCTTCAAGTGTCAGCGCAAGGTCTTGGTTGTATGGGACTTTCCATCTTAGATGGAACCA 127
Query 205 CCAAGGTTGA-GACAGATCTCA-TTGCTCTCATTCACCATGCCATTAACTCCGGCATCAC 262
| ||| | || | ||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 128 CTAAGCTAGACG-CAGATCT-AGTTGCTCTCATTCACCATGCCATTAACTCCGGCATCAC 185
Query 263 ACTCCTCGACACCTCCGACATTTACGGTCCTGAGACCAACGAGTTGCTCCTTGGTCAGGC 322
|||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 186 GCTCCTCGACACCTCTGACATTTACGGTCCCGAGACCAACGAGTTGCTCCTTGGCCAGGC 245
Query 323 TTTGAAAGATGGGATGAGGGAGAAGGTGGAATTGGCAACCAAATTTGGGCTTCTCTTGAA 382
||||| |||||||||||||||||| |||||||||||||||||||||||| ||||||| ||
Sbjct 246 TTTGAGAGATGGGATGAGGGAGAAAGTGGAATTGGCAACCAAATTTGGGATTCTCTT-AA 304
Query 383 -AGATCAGAAATTGGGTTACAGGGGAGATCCAGCCTATGTGAGAGCTGCCTGTGAAGCAA 441
|| | ||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
Sbjct 305 GAGGTGAGAAATTGGGTTACAGGGGAGATCCTGCCTATGTGAGAGCTGCGTGTGAAGCCA 364
Query 442 GCTTAA-GGCG 451
|||||| ||||
Sbjct 365 GCTTAAAGGCG 375
> Ahg924983 jgi|Araly1|924983|scaffold_200544.1
Length=1085
Score = 665 bits (360), Expect = 0.0
Identities = 816/1033 (79%), Gaps = 44/1033 (4%)
Strand=Plus/Plus
Query 115 GAGTGCGTAGGATCAAGCTAGGAAGCCAAGGTCTTGAAGTGTCAGCGCAAGGTCTTGGTT 174
||||||| ||||| ||||||||||||||||| || || || || |||||||| |||||||
Sbjct 44 GAGTGCGGAGGATGAAGCTAGGAAGCCAAGGCCTCGAGGTATCGGCGCAAGGCCTTGGTT 103
Query 175 GTATGGGACTTTC-CATC-TTCGATGGAACTACCAAGGTTGAGACAG-ATCTCATTGCTC 231
| ||||| || || || || | || || ||||| || || | | | ||| ||||
Sbjct 104 GCATGGGCCTCTCTGGTCATT--ACGGTGCTTCCAAGCCGGAAACTGAAGC-CATCGCTC 160
Query 232 TCATTCACCATGCCATTAACTCCGGCATCACACTCCTCGACACCTCCGACATTTACGGTC 291
| || ||||| || |||||||||||| | || |||| |||||||| ||||| || ||||
Sbjct 161 TTATCCACCACGCTATTAACTCCGGCGTTACTTTCCTTGACACCTCTGACATGTATGGTC 220
Query 292 CTGAGACCAACG-AGTTGCTCCTTGGTCAGGCT-TTGAAAGATGG-GATGAGGGAGAAGG 348
|||| || || | | || |||||||| ||||| || || ||||| | |||||||||| |
Sbjct 221 CTGAAACTAATGAAATT-CTCCTTGGAAAGGCTCTT-AAGGATGGTG-TGAGGGAGAAAG 277
Query 349 TGGA-ATTGGCAACCAAATTTGGGCTTCTCT-TGAAAGATCAGAAATTGGG---TTACAG 403
|||| || || ||||||||||| || || || ||| |||| ||| ||| |
Sbjct 278 TGGAGCTT-GCGACCAAATTTGGAATTAGCTATG-CAGA-GGGAAAGAGGGAAATTA-A- 332
Query 404 GGGAGATCCAGCCTATGTGAGAGCTGCCTGTGAAGCAAGCTTAAGGCGTTTAGGA-GTTA 462
||||||||| |||||||| |||||||| ||||| || || |||| ||| || || |||
Sbjct 333 GGGAGATCCTGCCTATGTTAGAGCTGCTTGTGAGGCTAGTTTAAAGCGGCTA-GATGTTT 391
Query 463 GCTGCATAGATCTTTATTACCAGCATAGGATCGATACCAC-TGTCCCCATTGAAGTCACT 521
|||||| ||||||||||| |||||| ||||||||| | | |||||| || ||| |||||
Sbjct 392 CCTGCATTGATCTTTATTATCAGCATCGGATCGATA-CTCGTGTCCCTATCGAAATCACT 450
Query 522 ATTGGAGAACTGAAGAAGCTAGTTGAAGAGGGTAAGATAAAGTACATTGGTTTGTCTGAA 581
|| |||||||| |||||||| |||||||||||||| ||||||||||| |||||||||||
Sbjct 451 ATGGGAGAACTAAAGAAGCTGGTTGAAGAGGGTAAAATAAAGTACATCGGTTTGTCTGAG 510
Query 582 GCCTGTGCCTCGACTATAAGAAGAGCCCATGCTGTTCACCCGCTAACCGCTGTGCAGTTG 641
|||| || ||||||||| |||||||| |||||||||||||| | || || ||||||||
Sbjct 511 GCCTCTGGCTCGACTATCAGAAGAGCGCATGCTGTTCACCCAATTACTGCCGTGCAGTTA 570
Query 642 GAATGGTCTTTATGGTCGAGAGACGTTGAAGAAGACATCATTCCTACTTGCAGGGAGCTC 701
|| ||||| | ||| |||||||||| |||||||| ||| | || || |||||||| ||
Sbjct 571 GAGTGGTCCCTGTGGACGAGAGACGTGGAAGAAGAAATCGTCCCAACCTGCAGGGAACTT 630
Query 702 GGGATTGGAATTGTAGCTTACAGTCCTCTGGGACTG-GGGTTCTTTGC-TGCAGGA-CCA 758
|||||||| ||||| ||||||||||||| |||| | || |||||||| | | ||| |||
Sbjct 631 GGGATTGGGATTGTTTCTTACAGTCCTCTAGGAC-GAGGTTTCTTTGCAT-CGGGACCCA 688
Query 759 AAATTCATTGAGAGTATGGACAATGGTGACTACAGAAAGGGTTTACCGAGATTCCAGCAA 818
| || |||||| | |||||| |||||| |||||||| | |||| |||||||| ||
Sbjct 689 AGCTT-GTTGAGAACCTAGACAATAGTGACTTCAGAAAGGCTCTACCAAGATTCCAACAG 747
Query 819 GAGAACTTAGACCACAACAAGATTCTCTATGAGAAGGTCAATGCAATGGCAGAGAAGAAA 878
|| ||||||||||||||||||||||||||||||||||| |||||| || ||||||||
Sbjct 748 GAAAACTTAGACCACAACAAGATTCTCTATGAGAAGGTTTGTGCAATATCAAAGAAGAAA 807
Query 879 AGCTGTACTCCTGCACAATTAGCTTTGGCATGGGTTCATCACCAAGGAAATGATGTCTGC 938
| || | ||| | |||| |||| | || |||||||| ||||||||| ||||||| |||
Sbjct 808 GGATGCAGTCCCGGACAACTAGCCCTCGCCTGGGTTCACCACCAAGGAGATGATGTTTGC 867
Query 939 CCAATCCCAGGAACCTCTAAGATCAAAAACCTTAATCAGAACATAGGAGCTTTATCTGTG 998
|| |||||||||||| ||||||| ||||||| || |||||||| ||||||||||| |||
Sbjct 868 CCCATCCCAGGAACCACTAAGATTGAAAACCTCAACCAGAACATTGGAGCTTTATCAGTG 927
Query 999 AAACTCAGTA-TCGAAGAGATGGCCGAGCTTGACG-CCATGGGACATCCCGATTCTGTGA 1056
||||||| | | ||||||||| | ||||| || | |||| | || || || |||||||
Sbjct 928 AAACTCACTCCT-GAAGAGATGTCTGAGCTCGA-GACCATTGCCCAACCAGAGTCTGTGA 985
Query 1057 AAGGGGAAAGGT-CA-GCCACCTATATAGTTA-C-TTACAAGAATTCTGAAACTCCACCA 1112
|||| ||||| | || | || | | | | | | || |||||| ||||| ||||||||
Sbjct 986 AAGGAGAAAGATACATGGCAAC-AG-T-GCCAACCTT-CAAGAACTCTGACACTCCACCG 1041
Query 1113 CTGTCTTCTTGGA 1125
||||||||||||
Sbjct 1042 TTGTCTTCTTGGA 1054
> Ahg475260 jgi|Araly1|475260|fgenesh2_kg.2__390__AT1G60710.1
Length=1197
Score = 651 bits (352), Expect = 0.0
Identities = 817/1037 (79%), Gaps = 50/1037 (5%)
Strand=Plus/Plus
Query 114 GGAGTGCGTAGGATCAAGCTAGGAAGCCAAGGTCTTGAAGTGTCAGCGCAAGGTCTTGGT 173
|||||| | ||||| ||||||||||||||||| ||||| || || |||||||| || |||
Sbjct 90 GGAGTGAGAAGGATGAAGCTAGGAAGCCAAGGCCTTGAGGTATCGGCGCAAGGCCTCGGT 149
Query 174 TGTATGGGACTTTCCATC-TTCGATGGAACTACCAAGGTTGAGACAGATC-TCATTGCTC 231
|| ||||| || ||| | ||| | || || ||||| || || || | ||| ||||
Sbjct 150 TGCATGGGCCTCTCC-GCTTTCTACGGTGCTCCCAAGCCGGAAACTGA-CGCCATCGCTC 207
Query 232 TCATTCACCATGCCATTAACTCCGGCATCACACTCCTCGACACCTCCGACATTTACGGTC 291
|||| ||||| || ||| ||||||| |||| |||| |||||||| ||||| |||||||
Sbjct 208 TCATCCACCACGCTATTCACTCCGGTGTCACTTTCCTTGACACCTCTGACATCTACGGTC 267
Query 292 CTGAGACCAACGA-GTTGCTCCTTGGTCAGGCTTTGAAAGATGGGA-TGAGGGAGAAGGT 349
|||| |||||||| ||| |||||||| ||||| |||||||| ||| | || || || ||
Sbjct 268 CTGAAACCAACGAGGTT-CTCCTTGGAAAGGCTCTGAAAGAT-GGAGTTAGAGAAAAAGT 325
Query 350 GGAA-TTGGCAACCAAATTTGGGCTTC--TCT-TGAAAGATCAGAAATTG-G-GTTACAG 403
|||| || || ||||||||| || || | | || ||| |||| | | | | ||
Sbjct 326 GGAACTT-GCGACCAAATTT-GGAATCAGT-TATG-CAGA-GGGAAAGAGAGAGGT-GAG 379
Query 404 GGGAGATCCAGCCTATGTGAGAGCTGCCTGTGAAGCAAGCTTAAGGCGTTTAGGAGT-TA 462
|||||||| | ||||| || ||||| ||||| || || |||| | | || || | |
Sbjct 380 AGGAGATCCTGAGTATGTAAGGGCTGCTTGTGAGGCTAGTTTAAAGAGGCTA-GA-TATT 437
Query 463 G-CTGCATAGATCTTTATTACCAGCATAG-GATCGATACCAC-TGTCCCCATTGAAGTCA 519
| ||| || ||||||||||| ||||| | | |||||| | | ||| || || ||| |||
Sbjct 438 GCCTGTATTGATCTTTATTATCAGCACCGTG-TCGATA-CTCGTGTTCCTATCGAAATCA 495
Query 520 CTATTGGAGAACTGAAGAAGCTAGTTGAAGAGGGTAAGATAAAGTACATTGGTTTGTCTG 579
|||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 496 CTATGGGAGAACTGAAGAAGCTGGTTGAAGAGGGTAAAATAAAGTACATTGGTTTGTCTG 555
Query 580 AAGCCTGTGCCTCGACTATAAGAAGAGCCCATGCTGTTCACCCGCTAACCGCTGTGCAGT 639
|||||| ||| || ||||| |||||||| |||||||||||||| | || ||||||||||
Sbjct 556 AAGCCTCTGCTTCAACTATCAGAAGAGCGCATGCTGTTCACCCAATTACTGCTGTGCAGT 615
Query 640 TGGAATGGTCTTTATGGTCGAGAGACGTTGAAGAAGACATCATTCCTACTTGCAGGGAGC 699
| |||||||| || ||| ||||||| || |||||||| |||||||| || |||||||| |
Sbjct 616 TAGAATGGTCCTTGTGGACGAGAGATGTGGAAGAAGAAATCATTCCGACCTGCAGGGAAC 675
Query 700 TCGGGATTGGAATTGTAGCTTACAGTCCTCTGGGACTGGGGTT-CTTTGC-TGCAGGACC 757
| |||||||| ||||| ||||| |||||||| |||| | |||| |||||| | | |||||
Sbjct 676 TTGGGATTGGGATTGTTGCTTATAGTCCTCTAGGAC-GAGGTTTCTTTGCAT-CTGGACC 733
Query 758 AAAA-TTCATTGAGAGTATGGACAATGG-TGACTACAGAAAGGGTTTACCGAGATTCCA- 814
|| || |||||| | || || || ||||| |||||||| | |||| ||||||||
Sbjct 734 CAAGCTTG-TTGAGAACCTAGAAAA-GGATGACTTCAGAAAGGCTCTACCAAGATTCCAA 791
Query 815 GCAAGAGAA-CTTAGACCACAACAAGATTCTCTATGAGAAGGTCAATGCAATGGCAGAGA 873
| | || || ||||||||||||||||||| | ||||||||||| |||||| | || |
Sbjct 792 G-A-GAAAAACTTAGACCACAACAAGATTGTTTATGAGAAGGTTTGTGCAATCTCGGAAA 849
Query 874 AGAAAAGCTGTACTCCTGCACAATTAGCTTTGGCATGGGTTCATCACCAAGGAAATGATG 933
||||| | || ||||||||||| |||||| ||||||||||||| ||||| ||| ||||||
Sbjct 850 AGAAAGGATGCACTCCTGCACAGTTAGCTCTGGCATGGGTTCACCACCAGGGAGATGATG 909
Query 934 TCTG-CCCAATCCCAGGAACCTCTAAGATCAAAAACCTTAATCAGAACATAGGAGCTTTA 992
| || |||| ||||||||||| |||||||| ||||||| || || ||||| |||||||||
Sbjct 910 TTTGTCCCA-TCCCAGGAACCACTAAGATCGAAAACCTCAACCAAAACATTGGAGCTTTA 968
Query 993 TCTGTGAAACTCAGTATC-GAAGAGATGGCCGAGCTTGACGCCATGGGACATCCCGAT-T 1050
| |||||||||| | | ||||||||| | |||||||| ||||| | || || | | |
Sbjct 969 GCAGTGAAACTCAC-ACCCGAAGAGATGACTGAGCTTGAGGCCATTGCCCAACCAGGTGT 1027
Query 1051 CTGTGAAAGGGGAAAGGT-CAGCCACCTAT-ATAGTTACTTACAAGAATTCTGAAACTCC 1108
||||||||||||||| | | | | | || ||| |||| |||||| ||||| |||||
Sbjct 1028 -TGTGAAAGGGGAAAGATACGGT-AGC-ATGATACCCACTTTCAAGAACTCTGACACTCC 1084
Query 1109 ACCACTGTCTTCTTGGA 1125
||| ||||||||||||
Sbjct 1085 ACCGTTGTCTTCTTGGA 1101
> Ahg475262 jgi|Araly1|475262|fgenesh2_kg.2__392__AT1G60680.1
Length=1168
Score = 580 bits (314), Expect = 6e-165
Identities = 736/936 (79%), Gaps = 43/936 (5%)
Strand=Plus/Plus
Query 115 GAGTGCGTAGGATCAAGCTAGGAAGCCAAGGTCTTGAAGTGTCAGCGCAAGGTCTTGGTT 174
||||| | ||||| ||||||||||||||||| ||||| || || || ||||| |||||||
Sbjct 77 GAGTGAGGAGGATGAAGCTAGGAAGCCAAGGCCTTGAGGTATCGGCACAAGGCCTTGGTT 136
Query 175 GTATGGGACTTTCCATCTTCG--ATGGAACTACCAAGGTTGAGACAG-ATCTCATTGCTC 231
| |||| || ||| | ||| | || || ||||| || || | | | ||| ||||
Sbjct 137 GCATGGCCCTCTCC-GC-TCGCTACGGTGCTCCCAAGCCGGAAACTGAAGC-CATCGCTC 193
Query 232 TCATTCACCATGCCATTAACTCCGGCATCACACTCCTCGACACCTCCGACATTTACGGTC 291
|| | |||||||| || ||||| || | || || | |||||||| ||||| |||||||
Sbjct 194 TCCTCCACCATGCTATCAACTCTGGTGTTACTTTCTTTGACACCTCTGACATGTACGGTC 253
Query 292 CTGAGACCAACGAGTTGCTCCTTGGTCA-GGCTTTGAAAGATGGGATGAGGGAGAAGGTG 350
|||||||||||||||||||||| || || |||| |||||||||| ||| |||||| ||
Sbjct 254 CTGAGACCAACGAGTTGCTCCTAGG-CAAGGCTCTGAAAGATGGCTTGAAGGAGAAAGTA 312
Query 351 GAA-TTGGCAACCAAATTTGGGCTTCTCT-T-GAAAGATCAG-AAATTGG-GTTACAGG- 404
|| ||| | ||||||||||| |||| | | | | || | ||||| | | | |
Sbjct 313 GAGCTTG-CGACCAAATTTGGA-TTCTTTATAGTA-GAGGGGGAAATTTCCGAAATAAGA 369
Query 405 GGAGATCCAGCCTATGTGAGAGCTGCCTGTGAAGCAAGCT-TAAGGCGTTTAGG-AGTTA 462
|||||||| | ||||| |||||||| ||||| ||||| | ||| | | |||| | ||
Sbjct 370 GGAGATCCTGAGTATGTAAGAGCTGCGTGTGAGGCAAG-TGTAAAGAGGTTAGATA-TT- 426
Query 463 GC-TGCATAGATCTTTATTACCAGCATAG-GATCGATAC-CACTGTCCCCATTGAAGTCA 519
|| ||||| ||||| ||||| |||||| | | ||||||| | ||| || || ||| |||
Sbjct 427 GCCTGCATTGATCTCTATTATCAGCATCGTG-TCGATACTCG-TGTTCCTATCGAAATCA 484
Query 520 CTATTGGAGAACTGAAGAAGCTAGTTGAAGAGGGTAAGATAAAGTACATTGGTTTGTCTG 579
|||| |||||||| ||||||||||| ||||| ||||| ||||| || ||||||||||| |
Sbjct 485 CTATGGGAGAACTTAAGAAGCTAGTGGAAGAAGGTAAAATAAACTATATTGGTTTGTCAG 544
Query 580 AAGCCTGTGCCTCGACTATAAGAAGAGCCCATGCTGTTCACCCGCTAACCGCTGTGCAGT 639
|||| | || || ||||| |||||||| ||||||||||||||| |||||||||||||
Sbjct 545 AAGCTTCAGCTTCAACTATCAGAAGAGCGCATGCTGTTCACCCGATAACCGCTGTGCAAA 604
Query 640 TGGAATGGTCTTTATGGTCGAGAGACGTTGAAGAAGACATCATTCCTACTTGCAGGGAGC 699
| |||||||| |||||||||||||||| |||||||| |||||||| || |||||||| |
Sbjct 605 TAGAATGGTCCTTATGGTCGAGAGACGCGGAAGAAGATATCATTCCAACCTGCAGGGAAC 664
Query 700 TCGGGATTGGAATTGTAGCTTACAGTCCTCTGGGACTGGGG-TTCTTTGC-TGCAGGACC 757
| |||||||| || |||||||| || ||||| ||| | || ||||| || | |||||||
Sbjct 665 TTGGGATTGGTATAGTAGCTTATAGCCCTCTAGGAA-GAGGCTTCTTAGCAT-CAGGACC 722
Query 758 AAAA-TT-CATTGAGAGTATGGACA-ATGGTGACTACAGAAAGGGTTTACCGAGATTCCA 814
|| || | | |||| | |||| | | | ||||| ||||||| | |||| ||||||||
Sbjct 723 CAAGCTTGC-T-GAGAATCTGGA-AGACGATGACTTCAGAAAGACTCTACCAAGATTCCA 779
Query 815 GCAAGAGAACTTAGACCACAACAAGATTCTCTATGAGAAGGTCAA-TGCAATGGCAGAGA 873
|| || ||||||||||||||||||||||||| |||||| || | ||||||| | | ||
Sbjct 780 ACAGGAAAACTTAGACCACAACAAGATTCTCTTTGAGAAAGT-ATCTGCAATGTCTGCGA 838
Query 874 AGAAAAGCTG-TACTCCTGCACAATTAGCT-TTGGCATGGGTTCATCACCAAGGAAATGA 931
||||| | || | |||| |||||| |||| ||| |||||||||||||||| ||| |||
Sbjct 839 AGAAAGGATGCT-CTCCCGCACAACTAGCCCTTG-CATGGGTTCATCACCAGGGAGCTGA 896
Query 932 TGTCTGCCCAATCCCAGGAACCTCTAAGATCAAAAACCTTAATCAGAACATAGGAGCTTT 991
||| ||||| || ||||||||| | |||||| ||||||| || |||||||| ||||||||
Sbjct 897 TGTTTGCCCCATTCCAGGAACCACGAAGATCGAAAACCTCAACCAGAACATTGGAGCTTT 956
Query 992 ATCTGTGAAACTCAGTATCGAAGAGATGGCCGAGCT 1027
||| |||||||| | || |||||||||| | |||||
Sbjct 957 ATCAGTGAAACTTACTACCGAAGAGATGTCTGAGCT 992
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46814942076
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5