BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G10820.2
Length=1573
Score E
Sequences producing significant alignments: (Bits) Value
Ahg910830 jgi|Araly1|910830|Al_scaffold_0001_1084 1144 0.0
> Ahg910830 jgi|Araly1|910830|Al_scaffold_0001_1084
Length=792
Score = 1144 bits (619), Expect = 0.0
Identities = 743/798 (93%), Gaps = 27/798 (3%)
Strand=Plus/Plus
Query 270 ATGATTCCAATGGATAATCACTGCTTGCCAAGTACTAGCACCACCGGTCTTGTATTCCCG 329
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1 ATGATTCCAATGGATAATCACTGCTTGCCAAGTACTAGCACCTCCGGTCTTGTATTCCCT 60
Query 330 ACCAATTACGGTGTTAATGCGATTAACGCTTCCTCCGGTTTTCACCCAGCTGTGGATGCT 389
|||||||||||||| |||| ||| ||| || | ||||| |||||||||||||||||| ||
Sbjct 61 ACCAATTACGGTGTCAATGGGATAAACACTACTTCCGGGTTTCACCCAGCTGTGGATTCT 120
Query 390 TCGGGTTCAGTGGCTGCAGGAGTCAAACAAGAAGCTGCTTTGGTTATGGATTGGTCCGTT 449
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCGGGTTCGGTGGCTGCAAGAGTCAAACAAGAAGCTGCTTTGGTTATGGATTGGTCCGTT 180
Query 450 GAGGAACAGTATGTTTTGGAGAACGGCCTTGCAAAATTAAAAGATGAACCCAAAATTTCA 509
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GAGGAACAGTATGTGTTGGAGAACGGCCTTGCAAAATTAAAAGATGAACCCAAAATTTCA 240
Query 510 AAGTATGTAAAGATCGCTGCAACTCTACCGGATAAAACTGTAAGGGATGTAGCATTGAGG 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AAGTATGTAAAGATCGCTGCAACTCTACCGGATAAAACTGTAAGGGATGTAGCATTGAGG 300
Query 570 TGTAGATGGATGACGAGAAAACGGAGGAAACGAGAGGATAATAATGCCGCTAAGAACA-T 628
|||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |
Sbjct 301 TGTAGATGGATGACGAGAAAACGGAGGAAAAGAGAAGATAATAATGCCGCTAAGAACATT 360
Query 629 -----T----AG--CA-----C-T-A-GG-AAGGTGGTGGATACATCCCCAGAACTGAAC 668
| || || | | | || ||||||||||||||||||||||||||||||
Sbjct 361 AGCAATAGGAAGACCATGCTTCTTCATGGTAAGGTGGTGGATACATCCCCAGAACTGAAC 420
Query 669 ATGCTATCCAATGTGCCACAACAAAATGCTTTATATGTCCTGAACAATATGTGCCACAGT 728
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 421 ATGCTATCCAATGTGCCACAACAAAATGCTTTATATGTCATGAACAATATGTGCCACAGT 480
Query 729 ACACGCACGCCTTTCGAAGGTTTAAGTGACGCAGTAATGGATCTTCTACAGCAAAATGCT 788
||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 481 ACACGCATGCCTTTTGAAGGTTTAAGTGACACAGTAATGGATCTTCTACAGCAAAATGCT 540
Query 789 CAAGCTTTTAGTCAGATTTCTTACAACCTCTCTGCGTGCAAGCTGCAGGATAACATCAGT 848
|||||||||||||||||||||||||||||||||||||||||| | | ||||||||||
Sbjct 541 CAAGCTTTTAGTCAGATTTCTTACAACCTCTCTGCGTGCAAG--G-A---TAACATCAGT 594
Query 849 CTCTTTCATCAGGCAAGAAACAATATCAGCGCCATTTTGACTGACATGAAGGAGATGCCT 908
|||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 595 CTCTTTTATCAGGCAAGAAACAATATCAGCGCCATTCTGACTGATATGAAGGAGATGCCT 654
Query 909 GGAATCATGAGTCGGATGCCGGCTCTACCGGTTTCAATTAATGATGATCTTGCAAGCAAT 968
|| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 655 GGTATCATGAGTCGAATGCCGGCTCTACCAGTTTCAATTAATGATGATCTTGCAAGCAAT 714
Query 969 CTATTGTCGAGTACAACACAGCCAATATCGTACAACATTCCACCAAGCATCCACCTGAAG 1028
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 TTATTGTCGAGTACAACACAGCCAATATCGTACAACATTCCACCAAGCATCCACCTGAAG 774
Query 1029 CAAGAGCCAAGAAGTTGA 1046
|||||||| |||| ||||
Sbjct 775 CAAGAGCCGAGAATTTGA 792
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58925609015
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5