BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G10830.1
Length=1308
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471219 jgi|Araly1|471219|fgenesh2_kg.1__1173__AT1G10830.1 1903 0.0
> Ahg471219 jgi|Araly1|471219|fgenesh2_kg.1__1173__AT1G10830.1
Length=1245
Score = 1903 bits (1030), Expect = 0.0
Identities = 1117/1159 (96%), Gaps = 5/1159 (0%)
Strand=Plus/Plus
Query 3 TTTATTACTTCCTCTTCGAAAGATTGTTTACCAACAAGAACAATGGCGGTTTATCATCTC 62
||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1 TTTATTATTTCTTCTTCGAAAGATTTTTTACCAACAAGAACAATGGCGGTTTATCATCTC 60
Query 63 CTTCTCTCGAGCCCACCTTCGCTTCTTCTTCTCCCTCCTTCTCCTCGCCGCCCTAACCTC 122
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 61 CTTCTCTCGAGCCCACCTTCGCTTCTTCTTCTTCCTCCTTCTCCTCGCCGCCCTAACCTC 120
Query 123 ACCTTAATCCGCCGTATCCCAGCTCATCCTCGCCTCGGAAACTCGACCAGCTTGCTTTCT 182
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 121 ACCTTAATCCGCCGTATCCCAGCTCATCCTCGTCTCGGAAACTCGACCAGCTTGCTTTCT 180
Query 183 TCTTCGTCACCGGTAATTCGGAAAATTCTGGTTCGTAGCACTCTCCGGGAAGACCAACCC 242
|||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||
Sbjct 181 TCTTCGTCACCGGTCATTCGGAAAATTCTCGTCCGTAGCACTCTCCGGGAAGACCAACCA 240
Query 243 ATCGCCTCTGACTCCGAGAGTAGTCCTACTCTACTGATCGGTGAAGATTCTGCTGCTTTT 302
|||||||||||| || ||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 241 ATCGCCTCTGACGCC--GAG-AGTCCTACTCTACTGATCGGCGAAGATTCTGCTGCTTTT 297
Query 303 GAATTAGGGAAACAGAAGCTTGTTTCCTGGGTTTATTTCGGTGTTGTCCTTGGAGTTGTT 362
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 298 GAATTAGGGAAGCAGAAGCTTGTTTCCTGGGTTTATTTCGGTGTTGTTCTTGGAGTTGTT 357
Query 363 CTCTTTATCCTCAATGTTGTTTGGATCGATAATTCCACCGGTTTCGGAAAATCATTCATC 422
|||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 358 CTCTACATCCTCAATGTTGTTTGGATCGATAATTCGACCGGTTTCGGAAAATCATTCATC 417
Query 423 GACGCCGTCTCTAACATCTCCGGCTCACCGGAGGTTGCTATGTTAATGCTTATCCTTATA 482
||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 418 GACGCCGTCTCTAGCATCTCCGGTTCACCGGAGGTTGCTATGTTAATGCTTATCCTCATA 477
Query 483 TTTGCAATTGTACATAGTGGTTTAGCTAGTCTAAGGGATATAGGAGAGAAACTTATAGGT 542
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 478 TTTGCAATTGTACATAGTGGTTTAGCTAGTCTCAGGGATATAGGAGAGAAACTTATAGGT 537
Query 543 GAACGAGCATTTCGTGTTTTGTTTGCTGGAATCTCTCTTCCTTTAGCTATGAGCACCATT 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 GAACGAGCATTTCGTGTTTTGTTTGCTGGAATCTCTCTTCCTTTAGCTATGAGCACCATT 597
Query 603 GTTTACTTTATAAACCATAGATATGATGGGTCACAGTTATGGCAGCTTCAGGGTGTTCCT 662
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 598 GTTTACTTTATAAACCATAGATACGATGGGTCACAGTTATGGCAGCTTCAGGGTGTTCCT 657
Query 663 GGAGTCCATGAAGCTATTTGGGTCGCTAATTTTGTATCCTTCTTCTTTCTCTATCCTTCA 722
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 658 GGAGTCCATGAAGCTGTTTGGGTCGCTAATTTTGTATCCTTCTTCTTTCTATATCCTTCA 717
Query 723 ACCTTCAATCTTCTGGAGGTAGCAGCTGTTGACAAACCGAAGATGCATCTCTGGGAGACC 782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 ACCTTCAATCTTCTGGAGGTAGCAGCTGTTGACAAACCGAAGATGCATCTCTGGGAGACC 777
Query 783 GGCATCATGAGAATCACTCGACATCCTCAGATGGTTGGACAAATCGTTTGGTGTTTAGCA 842
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 778 GGCATCATGAGAATCACTCGACATCCTCAGATGGTTGGACAAATTGTTTGGTGTTTAGCA 837
Query 843 CATACTCTCTGGATCGGAAACACAGTAGCTGCATCAGCTTCTCTCGGTTTGATTGCACAC 902
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 838 CACACTCTCTGGATCGGAAACACAGTAGCTGCATCGGCTTCTCTCGGTTTGATTGCACAC 897
Query 903 CATTTGTTTGGGGCGTGGAATGGAGACAGGAGATTGGCAAAAAGATATGGAGAGGATTTT 962
||||||||||||||||||||||||||||||||||| || |||||||| ||||||| ||||
Sbjct 898 CATTTGTTTGGGGCGTGGAATGGAGACAGGAGATTAGCTAAAAGATACGGAGAGGCTTTT 957
Query 963 GAAAGCATCAAGAAGAGAACAAGTGTGATTCCATTTGCTGCCATTTTCGAAGGACGGCAA 1022
||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 958 GAAAGCATCAAAAAGAGAACAAGTGTGATTCCATTTGCTGCGATTTTCGAAGGGCGGCAA 1017
Query 1023 GTTTTACCTGAGGATTACTACAAAGAATTTGT-CAGGTTGCCATATCTTGCAATCACTGC 1081
||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 1018 GTTTTGCCTGAGGATTACTACAAAGAATTTGTTC-GGTTGCCATATCTTGCAATCACTGC 1076
Query 1082 GTTAACGGTTGGGGCATATTTTGCTCACCCGCTAATGCAAGGTGCAAGCTTTAGGCTTCA 1141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 GTTAACGGTTGGGGCATATTTTGCTCACCCGCTAATGCAAGGTGCAAGCTTTAGGCTTCA 1136
Query 1142 TTGGTAAATTATATGTCAT 1160
|||||| ||| | ||||||
Sbjct 1137 TTGGTAGATTCTTTGTCAT 1155
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48911702511
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5