BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G10840.1
Length=1489
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919890 jgi|Araly1|919890|scaffold_101171.1 1770 0.0
> Ahg919890 jgi|Araly1|919890|scaffold_101171.1
Length=1054
Score = 1770 bits (958), Expect = 0.0
Identities = 1024/1056 (97%), Gaps = 3/1056 (0%)
Strand=Plus/Plus
Query 202 TATCACCGGAGACTATTTCAATGGCAACCATGGCTAGGTCGTTTCTGCAGGCGATATCGA 261
|||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 1 TATCTCCGGAGACTATTTCAATGGCAACCATGGCTAGGTCGTTTTTACAGGCGATATCGA 60
Query 262 AGGATGAGGCGGTGGCTCCTCCGCTTAGAGTTGTTCAGATCGAAGGACTGGCTGTACTAA 321
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 61 AGGATGAGGCGGTGGCTCCTCCGCTTAGAGTTGTTCAGATTGAAGGACTGGCTGTGCTAA 120
Query 322 AGATAATCAAACACTGCAAGGAGTTTTCACCGACCCTTGTCACTGGACAGCTTCTTGGAC 381
|||| |||||||| |||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 121 AGATGATCAAACATTGCAAGGAGTTTGCACCGACCCTTGTCACAGGACAGCTTCTTGGAC 180
Query 382 TTGATGTTGGTAGCGTCCTCGAAGTTACCAATTGTTTTCCTTTCCCGGTCAGGGATGATG 441
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTGATGTTGGTAGCGTCCTTGAAGTTACCAATTGTTTTCCTTTCCCGGTCAGGGATGATG 240
Query 442 ATGAAGAAATTGAAGCTGATGGTGCTAATTATCAGCTTGAGATGATGAGATGTCTGAGGG 501
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 241 ATGAAGAAATCGAAGCTGATGGTGCGAATTATCAGCTTGAGATGATGAGATGTCTGAGGG 300
Query 502 AGGTTAATGTTGACAACAACACTGTTGGCTGGTATCAATCTACAGTTCTTGGTTCGTATC 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AGGTTAATGTTGACAACAACACTGTTGGCTGGTATCAATCTACAGTTCTTGGTTCGTATC 360
Query 562 AGACTGTGGAACTGATTGAGACCTTCATGAATTACCAGGAGAATATCAAGAGGTGTGTGT 621
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 361 AGACTGTGGAACTGATTGAGACCTTCATGAATTACCAGGAGAATATTAAAAGGTGTGTGT 420
Query 622 GCATCATATATGATCCCTCTAAAGCTGATCTAGGCGTCTTAGCTTTGAAGGCTTTGAAGC 681
|||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 421 GCATCATATATGATCCCTCTAAAGCTGACCTAGGCGTCCTAGCTTTGAAGGCTTTGAAGC 480
Query 682 TTTCAGATTCCTTTATGGAGTTGTACCGAGGTGGAAACTTTACTGGCGAGAAGTTGAGAG 741
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 481 TTTCAGATTCCTTTATGGAGTTGTACCGAGGCGGAAACTTTACTGGCGAGAAGTTGAGAG 540
Query 742 AGAAAAATTTCTCCTGGATGGATATTTTTGAGGAAATACCTATCAAGGTTTCAAATTCTG 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 541 AGAAAAATTTCTCCTGGATGGATATTTTTGAGGAAATACCTATCAAGGTTTCAAACTCTG 600
Query 802 CCCTTGTCAGTGCCTTTATGACCGAACTGGAGACTGATACACCTGTCTCACAGGGCGATT 861
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 601 CACTTGTCAGTGCCTTTATGACCGAACTGGAGACAGATACACCTGTCTCACAGGGCGATT 660
Query 862 ATGATCGTCTACACTCATCAACCACTCCTTTCCTTGAGAACAATATGGAGTTTTTGATTA 921
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 661 ATGATCGTCTACACTCATCAACAACTCCTTTCCTTGAGAACAATATGGAGTTTTTGATTA 720
Query 922 AATGCATGGATGATTTATCTATGGAACAGCAAAAGTTCCAGTATTACTACCGGAACCTGT 981
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 721 AATGCATGGATGATTTATCTATGGAGCAGCAGAAGTTCCAGTATTACTACCGGAACCTGT 780
Query 982 CTCGTCAGCAAGCACAACAGCAAGCCTGGCTCCAGAAGAGAA-GAACGGAGAACATGGCT 1040
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 781 CTCGTCAGCAAGCACAACAGCAAGCCTGGCTCCAGAAGAGAAAGA-CGGAGAACATGGCT 839
Query 1041 CGTAAATCAGCTGGAGAGGAGCCTTTACCAGAAGAGGATCCTTCAAACCCAATCTTTAAG 1100
|| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 840 CGGAAATCAGCTGGAGAGGAGCCTTTGCCCGAAGAGGATCCTTCAAACCCAATCTTTAAG 899
Query 1101 GCGATCCCTGAACCATCTAGGCTAGAGAGTTTCCTCATCACAAACCAAGTCTCAAACTTC 1160
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 GCGATCCCTGAACCATCAAGGCTAGAGAGTTTCCTCATCACAAACCAAGTCTCAAACTTC 959
Query 1161 TGTGGCCAAATCAATGGAGTGGCTGGCCAGAACTTCAGCAGGCTTTACCTGACCAAAGCA 1220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 TGTGGCCAAATCAATGGAGTGGCTGGCCAGAACTTCAGCAGGCTTTACCTGACCAAAGCA 1019
Query 1221 TTGCACGACAACTGATTGCAAAGACTACCCAAGttt 1256
|||||||| ||||||| |||| ||||||||||||||
Sbjct 1020 TTGCACGAAAACTGATAGCAA-GACTACCCAAGTTT 1054
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55726028435
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5