BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G10840.1 Length=1489 Score E Sequences producing significant alignments: (Bits) Value Ahg919890 jgi|Araly1|919890|scaffold_101171.1 1770 0.0 > Ahg919890 jgi|Araly1|919890|scaffold_101171.1 Length=1054 Score = 1770 bits (958), Expect = 0.0 Identities = 1024/1056 (97%), Gaps = 3/1056 (0%) Strand=Plus/Plus Query 202 TATCACCGGAGACTATTTCAATGGCAACCATGGCTAGGTCGTTTCTGCAGGCGATATCGA 261 |||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||| Sbjct 1 TATCTCCGGAGACTATTTCAATGGCAACCATGGCTAGGTCGTTTTTACAGGCGATATCGA 60 Query 262 AGGATGAGGCGGTGGCTCCTCCGCTTAGAGTTGTTCAGATCGAAGGACTGGCTGTACTAA 321 |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| Sbjct 61 AGGATGAGGCGGTGGCTCCTCCGCTTAGAGTTGTTCAGATTGAAGGACTGGCTGTGCTAA 120 Query 322 AGATAATCAAACACTGCAAGGAGTTTTCACCGACCCTTGTCACTGGACAGCTTCTTGGAC 381 |||| |||||||| |||||||||||| |||||||||||||||| |||||||||||||||| Sbjct 121 AGATGATCAAACATTGCAAGGAGTTTGCACCGACCCTTGTCACAGGACAGCTTCTTGGAC 180 Query 382 TTGATGTTGGTAGCGTCCTCGAAGTTACCAATTGTTTTCCTTTCCCGGTCAGGGATGATG 441 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 181 TTGATGTTGGTAGCGTCCTTGAAGTTACCAATTGTTTTCCTTTCCCGGTCAGGGATGATG 240 Query 442 ATGAAGAAATTGAAGCTGATGGTGCTAATTATCAGCTTGAGATGATGAGATGTCTGAGGG 501 |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 241 ATGAAGAAATCGAAGCTGATGGTGCGAATTATCAGCTTGAGATGATGAGATGTCTGAGGG 300 Query 502 AGGTTAATGTTGACAACAACACTGTTGGCTGGTATCAATCTACAGTTCTTGGTTCGTATC 561 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 AGGTTAATGTTGACAACAACACTGTTGGCTGGTATCAATCTACAGTTCTTGGTTCGTATC 360 Query 562 AGACTGTGGAACTGATTGAGACCTTCATGAATTACCAGGAGAATATCAAGAGGTGTGTGT 621 |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| Sbjct 361 AGACTGTGGAACTGATTGAGACCTTCATGAATTACCAGGAGAATATTAAAAGGTGTGTGT 420 Query 622 GCATCATATATGATCCCTCTAAAGCTGATCTAGGCGTCTTAGCTTTGAAGGCTTTGAAGC 681 |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| Sbjct 421 GCATCATATATGATCCCTCTAAAGCTGACCTAGGCGTCCTAGCTTTGAAGGCTTTGAAGC 480 Query 682 TTTCAGATTCCTTTATGGAGTTGTACCGAGGTGGAAACTTTACTGGCGAGAAGTTGAGAG 741 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 481 TTTCAGATTCCTTTATGGAGTTGTACCGAGGCGGAAACTTTACTGGCGAGAAGTTGAGAG 540 Query 742 AGAAAAATTTCTCCTGGATGGATATTTTTGAGGAAATACCTATCAAGGTTTCAAATTCTG 801 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 541 AGAAAAATTTCTCCTGGATGGATATTTTTGAGGAAATACCTATCAAGGTTTCAAACTCTG 600 Query 802 CCCTTGTCAGTGCCTTTATGACCGAACTGGAGACTGATACACCTGTCTCACAGGGCGATT 861 | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 601 CACTTGTCAGTGCCTTTATGACCGAACTGGAGACAGATACACCTGTCTCACAGGGCGATT 660 Query 862 ATGATCGTCTACACTCATCAACCACTCCTTTCCTTGAGAACAATATGGAGTTTTTGATTA 921 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 661 ATGATCGTCTACACTCATCAACAACTCCTTTCCTTGAGAACAATATGGAGTTTTTGATTA 720 Query 922 AATGCATGGATGATTTATCTATGGAACAGCAAAAGTTCCAGTATTACTACCGGAACCTGT 981 ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| Sbjct 721 AATGCATGGATGATTTATCTATGGAGCAGCAGAAGTTCCAGTATTACTACCGGAACCTGT 780 Query 982 CTCGTCAGCAAGCACAACAGCAAGCCTGGCTCCAGAAGAGAA-GAACGGAGAACATGGCT 1040 |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| Sbjct 781 CTCGTCAGCAAGCACAACAGCAAGCCTGGCTCCAGAAGAGAAAGA-CGGAGAACATGGCT 839 Query 1041 CGTAAATCAGCTGGAGAGGAGCCTTTACCAGAAGAGGATCCTTCAAACCCAATCTTTAAG 1100 || ||||||||||||||||||||||| || |||||||||||||||||||||||||||||| Sbjct 840 CGGAAATCAGCTGGAGAGGAGCCTTTGCCCGAAGAGGATCCTTCAAACCCAATCTTTAAG 899 Query 1101 GCGATCCCTGAACCATCTAGGCTAGAGAGTTTCCTCATCACAAACCAAGTCTCAAACTTC 1160 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 900 GCGATCCCTGAACCATCAAGGCTAGAGAGTTTCCTCATCACAAACCAAGTCTCAAACTTC 959 Query 1161 TGTGGCCAAATCAATGGAGTGGCTGGCCAGAACTTCAGCAGGCTTTACCTGACCAAAGCA 1220 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 960 TGTGGCCAAATCAATGGAGTGGCTGGCCAGAACTTCAGCAGGCTTTACCTGACCAAAGCA 1019 Query 1221 TTGCACGACAACTGATTGCAAAGACTACCCAAGttt 1256 |||||||| ||||||| |||| |||||||||||||| Sbjct 1020 TTGCACGAAAACTGATAGCAA-GACTACCCAAGTTT 1054 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 55726028435 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5