BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G10850.1
Length=2743
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471223 jgi|Araly1|471223|fgenesh2_kg.1__1177__AT1G10850.1 3838 0.0
> Ahg471223 jgi|Araly1|471223|fgenesh2_kg.1__1177__AT1G10850.1
Length=2658
Score = 3838 bits (2078), Expect = 0.0
Identities = 2515/2715 (93%), Gaps = 74/2715 (3%)
Strand=Plus/Plus
Query 9 TATTCATGAATGCATTGAAGATGTCACAGTGAG-----AACaaaaaaaaa-GTTTTCCAG 62
||||||||||||||||||||| | ||||||||| || ||||||||| ||||| |||
Sbjct 1 TATTCATGAATGCATTGAAGAAGGCACAGTGAGAAAAAAAAAAAAAAAAAGGTTTTTCAG 60
Query 63 GCATGGCTTCACGTGATGACATCTTCCTCGACCAAGAACTTCGAGAAAAGATACTCAGAA 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GCATGGCTTCACGTGATGACATCTTCCTCGACCAAGAACTTCGAGAAAAGATACTCAGAA 120
Query 123 AGTGA-AGTgagagagagagaAAATGCCGGGGAA-TTTTAATGCTTCTTCTTCTCTTCTT 180
||||| |||||||||||||| |||||| || || |||||| ||||||||||||||||||
Sbjct 121 AGTGAGTGTGAGAGAGAGAGACAATGCC-GGAAATTTTTAAAGCTTCTTCTTCTCTTCTT 179
Query 181 -AGTGCTCACTACCAGAAGA-TTTCTTTCCGCCATTAAAGAGCAGAGTAGAGCAGAGCTC 238
| |||||||||||||| || |||| ||||||||| | | ||||||||||||
Sbjct 180 CA-TGCTCACTACCAGACGATTTTC-ATCCGCCATT-------A-A--AGAGCAGAGCTC 227
Query 239 TCActttcttcttcttcttcttcattttttacctttcccttttttgcttcGATCGAGATG 298
|||| | |||||||||||| | ||||| |||||| |||||||||||||||||||||||
Sbjct 228 TCAC--T-TTCTTCTTCTTC-T--TTTTTGACCTTT-CCTTTTTTGCTTCGATCGAGATG 280
Query 299 CTTTAGCATAATGGGGCAGATCTGGAAAGTGACTTAATAATAGAAAGTGATGGCTTTGAG 358
|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 281 CTTTAGCATAATGGGGCAGATCCGGAAAGTGACTTAATAATGGAAAGTGATGGCTTTGAG 340
Query 359 GAGATTCATGGGATGCTTTTTATGGAAACTCGATTTCGAACTGTATCAATCATTTCTGTT 418
|||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 341 GAGATTCATGGGATGCTTTTAATGGAAACTCGATTTCGAACTGTATCAATCA------TT 394
Query 419 TCTTTTATGAGCTGAGG-AAAAGAGCCACTC-TTTCTGATTTGATTGATTCA-TCA-TTC 474
|| |||||||||||||| ||||||||||||| |||| ||||||||||| ||| ||| |||
Sbjct 395 TC-TTTATGAGCTGAGGAAAAAGAGCCACTCTTTTC-GATTTGATTGAATCATTCATTTC 452
Query 475 ATCG-ACAATGGcttcttcttcttcttcttcgtcttcGAGTACGGTGTCGTTCGTAGTCT 533
|||| ||||||| ||||||| | || | | | | || ||||||||||
Sbjct 453 ATCGAACAATGG---------CTTCTTC-T--TC-T----T-C--T-TC-TTCGTAGTCT 490
Query 534 TTGCATTTACAGTCTTCTTCTGTTTGGTTACTCCGGCGAGATCTAGCGACGTCGAAGCTT 593
||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 491 TTGCATTTACAGTATTCTTCTGTTTGGTTTCTCCGGCGAGATCTAACGACGTCGAAGCTT 550
Query 594 TACTAAGCTTGAAATCTTCAATCGATCCATCTAATTCGATTTCTTGGAGAGGAACAGATC 653
|||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 551 TACTAAGCTTGAAATCCTCAATCGATCCATCTAATTCGATTTCATGGCGAGGAACAGATC 610
Query 654 TCTGCAACTGGCAAGGTGTTAGAGAATGTATGAATGGAAGAGTCTCCAAGCTTGTTCTTG 713
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 611 TCTGCAACTGGCAAGGTGTTAGAGAATGTATGAACGGAAGAGTCTCCAAGCTTGTTCTTG 670
Query 714 AGTACTTGAATCTCACCGGCTCACTTAACGAGAAGAGTTTGAACCAGTTGGATCAACTTA 773
||| ||||||||||| |||||||| || ||| |||||| ||||| |||||||||||||
Sbjct 671 AGTTTTTGAATCTCACTGGCTCACTCGACCAGAGGAGTTTAAACCAATTGGATCAACTTA 730
Query 774 GGGTTCTTAGTTTCAAAGCTAACTCTCTCTCCGGTTCAATCCCTAACCTCTCCGGTTTGG 833
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 731 GGGTTCTTAGTTTCAAAGCTAACTCTCTCTCCGGTTCAATCCCTAATCTCTCCGGTTTGG 790
Query 834 TTAACCTCAAATCGGTTTATCTTAACGATAACAACTTCTCCGGCGACTTCCCGGAGTCTC 893
|||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||
Sbjct 791 TTAACCTCAAATCGGTTTTTCTCAACGATAACAACTTCTCCGGCGAGTTCCCGGAGTCTC 850
Query 894 TCACGTCTCTTCACCGATTGAAAACTATTTTCCTCTCCGGAAACAGACTGTCCGGTCGAA 953
||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||
Sbjct 851 TCACGTCTCTTCACCGATTGAAAACCATTTTCCTCTCCGGTAACAGATTGTCCGGTCGAA 910
Query 954 TCCCTAGCTCGTTGCTTCGTCTCTCTCGTCTTTACACGCTCAATGTTGAGGACAATCTCT 1013
|||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||
Sbjct 911 TCCCTAGCTCGTTGCTCCGTCTCTCTCGTCTTTACACGCTCAATGTTCAGGACAATTTCT 970
Query 1014 TCACTGGTTCGATTCCTCCTCTTAACCAGACAAGTCTCAGATACTTCAATGTATCCAACA 1073
|||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 971 TCACTGGTTCAATCCCTCCTCTTAACCAGACGAGTCTCAGATACTTCAATGTATCCAACA 1030
Query 1074 ATAAGCTCTCTGGTCAAATTCCACTGACACGAGCTTTGAAGCAGTTTGATGAGTCATCGT 1133
|| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 1031 ATCAGCTCTCTGGTCAAATTCCACCGACACGAGCTCTGAAGCAGTTTGATGAGTCATCGT 1090
Query 1134 TTACCGGAAACGTCGCTCTTTGCGGCGATCAGATTGGAAGTCCATGCGGAATCTCACCTG 1193
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1091 TTACCGGAAACGTCGCTCTTTGCGGCGATCAGATTCAAAGTCCATGCGGAATCTCACCTG 1150
Query 1194 CGCCGTCTGCGAAACCAACGCCTATACCTAAGTCTAAGAAGAGCAAAGCGAAGCTGATCG 1253
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1151 CGCCGTCTGCGAAACCAACGCCTATACCTAAGTCTAAGAAGAGCAAAGCGAAGCTAATCG 1210
Query 1254 GGATTATCGCCGGAAGCGTTGCCGGCGGAGTACTAGTCCTTATCTTGCTATTGACGTTGC 1313
| ||||||||||||||||| ||||| || |||||| ||||||||||||| |||||||||
Sbjct 1211 GAATTATCGCCGGAAGCGTCGCCGGTGGGGTACTAATCCTTATCTTGCTGTTGACGTTGA 1270
Query 1314 TTATCGTCTGCTGGCGACGGAAGCGGCGGAACCAGGCACCGAGGGAAGATAGAAAAGGTA 1373
|||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 1271 TTATCGTCTGCTGGCGACGGAAGCGGCGGAGCCAGGCACCAAGGGAAGATAGAAAAGGTA 1330
Query 1374 AAGGAATAGCGGAAGCAGAAGGAGCAACAACTGCAGAGACAGAGAGAGACATTGAGAGGA 1433
||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 1331 AAGGAATAGTTGAAGCAGAAGGAGCAACACCTGCAGAAACAGAGAGAGACATTGAGAGGA 1390
Query 1434 AAGACAGAGGATTCTCATGGGAAAGAGGCGAAGAAGGTGCAGTGGGAACTCTGGTTTTCC 1493
||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||
Sbjct 1391 AAGACAGAGGATTCTCATGGGAAAGAGGCGAAGAAGGAGCAGTGGGCACTTTGGTTTTCC 1450
Query 1494 TTGGAACCAGTGATTCAGGCGAGACGGTAGTGAGATACACCATGGAAGATCTGCTAAAAG 1553
||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1451 TTGGAACTAGTGATTCAGGCGAGACGGTGGTGAGATACACCATGGAAGATCTGCTTAAAG 1510
Query 1554 CTTCGGCAGAGACATTGGGAAGAGGAACGTTGGGGAGCACGTACAAGGCTGTGATGGAGT 1613
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1511 CTTCGGCAGAGACACTGGGAAGAGGAACGTTGGGGAGCACGTACAAGGCTGTGATGGAGT 1570
Query 1614 CTGGGTTCATTGTCACTGTGAAGAGGCTCAAGAACGCAAGGTATCCTCGCATGGAGGAGT 1673
|||| ||||| |||||||||||||| ||||||||||| |||||||||||||||||||| |
Sbjct 1571 CTGGTTTCATAGTCACTGTGAAGAGACTCAAGAACGCTAGGTATCCTCGCATGGAGGAAT 1630
Query 1674 TCAAGAGACATGTTGAGATCCTTGGACAGCTCAAACACCCAAATCTGGTGCCTCTCAGAG 1733
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1631 TCAAGAGACATGTTGAGATCCTTGGACAGCTCAAACACCCAAATCTGGTTCCTCTCAGAG 1690
Query 1734 CCTATTTTCAAGCCAAGGAAGAACGCTTGCTCGTCTACGATTACTTCCCTAATGGCAGTC 1793
||||||| |||||||| || ||||||||||| ||||| ||||||||||| ||||||||||
Sbjct 1691 CCTATTTCCAAGCCAAAGAGGAACGCTTGCTTGTCTATGATTACTTCCCCAATGGCAGTC 1750
Query 1794 TCTTTACTCTTATTCACGGAACTAGGGCTTCTGGAAGTGGGAAGCCTCTTCACTGGACTT 1853
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1751 TCTTCACTCTTATTCACGGAACTAGGGCTTCTGGAAGTGGGAAGCCTCTTCACTGGACTT 1810
Query 1854 CATGCCTGAAAATAGCTGAGGACTTGGCCTCAGCTCTGCTCTACATACATCAGAATCCTG 1913
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1811 CATGCCTGAAAATAGCTGAGGACTTGGCCTCAGCTCTGCTCTACATTCATCAGAATCCTG 1870
Query 1914 GCTTGACTCATGGGAATTTGAAATCGTCCAATGTCTTGTTAGGTCCTGATTTTGAGTCCT 1973
|| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1871 GCCTAACTCATGGGAACTTGAAATCGTCCAATGTCTTGTTAGGTCCTGATTTTGAGTCCT 1930
Query 1974 GCCTCACGGATTACGGCCTCAGCACTCTCCATGACCCTGACTCAGTTGAAGAAACAAGCG 2033
||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1931 GCCTCACAGATTACGGGCTCAGCACTCTCCATGACCCTGACTCGGTTGAAGAAACAAGCG 1990
Query 2034 CAGTGTCTCTCTTTTACAAAGCTCCAGAGTGCAGAGACCCACGGAAAGCCTCTACACAGC 2093
| || |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 1991 CTGTCTCTCTCTTTTACAAAGCTCCTGAGTGCAGAGACCCAAGGAAAGCCTCTACACAGC 2050
Query 2094 CCGCTGATGTGTATAGCTTTGGGGTTCTTCTTCTCGAGCTTCTAACAGGTAGAACACCAT 2153
| |||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 2051 CTGCTGATGTCTATAGCTTTGGGGTCCTTCTTCTTGAGCTTCTAACAGGTAGAACACCAT 2110
Query 2154 TCCAGGACCTTGTTCAAGAATATGGGTCAGATATCTCAAGATGGGTGCGTGCAGTGAGAG 2213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2111 TCCAGGACCTTGTTCAAGAATATGGGTCAGATATCTCAAGATGGGTGCGTGCAGTGAGAG 2170
Query 2214 AGGAAGAGACTGAATCAGGTGAGGAACCGACTTCTTCAGGCAACGAAGCATCAGAGGAGA 2273
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 2171 AGGAAGAGACTGAATCAGGCGAGGAACCGACTTCTTCAGGCAACGAAGCATCTGAGGAGA 2230
Query 2274 AACTTCAGGCACTTTTAAGTATCGCAACGGTTTGTGTGACCATTCAACCCGATAACCGGC 2333
|||||||||||||| ||||||| ||||| ||||| || |||||||||||||| ||| |||
Sbjct 2231 AACTTCAGGCACTTCTAAGTATTGCAACAGTTTGCGTAACCATTCAACCCGAAAACAGGC 2290
Query 2334 CTGTGATGAGAGAGGTGTTGAAGATGGTGAGGGATGCAAGGGCTGAAGCACCATTCTCGT 2393
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2291 CTGTAATGAGAGAGGTGTTAAAGATGGTGAGGGATGCAAGGGCTGAAGCACCATTCTCGT 2350
Query 2394 CTAACAGTAGCGAACATTCGCCCGGGAGATGGTCGGATACCGTTCAGAGCTTGCCAAGGG 2453
|||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 2351 CTAACAGTAGTGAACATTCGCCCGGGAGATGGTCGGATACAGTTCAGAGTTTGCCAAGGG 2410
Query 2454 ATGATCAAGTGAGCATTTAGAGAAATTGGGTGGGCCTTCTTCATTGCTTTCATAGAATGA 2513
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 2411 ATGATCAAGTGAGCATTTAGAGAAATTGGCTGGGCCTTCTTCATTGCTTTCCTAGAATGA 2470
Query 2514 CACGTGTGATTCTTGAAGTAGGGTTCATAGTGTAAAGCTTCTTTTTTATTTTGTAACGCC 2573
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2471 CACGTGTGATTCTTGAAGTAGGGTTCATAGTGTAAAGCTTCTTTTT-ATTTTGTAACGCC 2529
Query 2574 ATTTTGATTCATCGACCTTGTAGGACTTGCATAAGATCTATTGAATTGAG-ATGCTGGCA 2632
||||||||||||||||||||||||||||||||||||||| |||||||| | | || |
Sbjct 2530 ATTTTGATTCATCGACCTTGTAGGACTTGCATAAGATCTGTTGAATTG-GTAAAATGT-A 2587
Query 2633 TTGAGT-AGTTGAAGAACAGAAGAATCttttttttttCATTCTTACTCTTTCTTTAAATA 2691
||||| | |||||||||||||||||||||||| |||| |||| |||| ||||| ||
Sbjct 2588 CTGAGTTAATTGAAGAACAGAAGAATCTTTTTT----CATTATTACCCTTTTTTTAAGTA 2643
Query 2692 ACACGACATTCAATA 2706
||| |||||||||||
Sbjct 2644 ACAAGACATTCAATA 2658
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 103491195665
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5