BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G10865.1

Length=538
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg471225 jgi|Araly1|471225|fgenesh2_kg.1__1179__AT1G10865.1         664    0.0  


> Ahg471225 jgi|Araly1|471225|fgenesh2_kg.1__1179__AT1G10865.1
Length=515

 Score =  664 bits (359),  Expect = 0.0
 Identities = 445/485 (92%), Gaps = 11/485 (2%)
 Strand=Plus/Plus

Query  4    TTGGAAAAACCTCCGTCTTTCGGGTCTTCGTCGACATTGATCCGTTTTTTACTCACCGTC  63
            |||||||||||||  |||||||||||| ||||||||||||||||||| |||||| |||||
Sbjct  1    TTGGAAAAACCTCTTTCTTTCGGGTCTCCGTCGACATTGATCCGTTTCTTACTCTCCGTC  60

Query  64   GCCGTTGAAATGGCGAAGTCTTGTAAGGGCCTTGCTGAAGAGCTTGTCAAATGTCTCAGT  123
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  61   GCCGTTGAAATGGCGAAGTCTTGTAAGGGTCTTGCTGAAGAGCTTGTCAAATGTCTCAGT  120

Query  124  GAATCGATTTGTGTCAAGGGCGAGAAACGATCAATTAGGGACTGCACTGGTGAAAAAAGC  183
            |||||||  || ||||||||||||||||| ||||||||||||||| | |||||||| |||
Sbjct  121  GAATCGACCTGCGTCAAGGGCGAGAAACGGTCAATTAGGGACTGCGCAGGTGAAAAGAGC  180

Query  184  CCATGTATACCGAGTGAGTGTGTTGGCCTAAGAGAAACCTACTTCAACTGTAAAAGAGGA  243
            ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  181  CCATGTATACCAAGTGAGTGTATTGGCCTAAGAGAAACCTACTTCAACTGTAAAAGAGGA  240

Query  244  CAGGTAGACATGAGAGCCAGGATTCGAGGAAACAAAGGCTACTAACAGAAGGGCACCTGC  303
            |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct  241  CAGGTAGACATGAGAGCCAGGATTCGAGGAAACAAAGGCTACTAACGGAAGAGCACCTGC  300

Query  304  ATATCCGATATCACATTTTCATTTTGTTGTTTTTGCGTTCTTTTTATCAAT-CCTTTGAT  362
             | |  | | ||||| ||||| |||||||||| |||||||||||||||||| ||||||||
Sbjct  301  -T-T--GTT-TCACACTTTCACTTTGTTGTTTCTGCGTTCTTTTTATCAATTCCTTTGAT  355

Query  363  TTCTAATAGTTGGAGCACAATATGAAGG-GACA-TGCAACTTAGTTACTTGCCATGTCAA  420
            ||||||||||||||  ||||| |||||| | || ||||||||||||||||||||||||||
Sbjct  356  TTCTAATAGTTGGAATACAATCTGAAGGAG-CAATGCAACTTAGTTACTTGCCATGTCAA  414

Query  421  TGTCAAGTTAGGCTTGTTCCTATACT-ATACTTGATTTCTTTTCCTCCTTAAAGTTGTAT  479
            | ||||||||||||||||||||| || | |||||||||| ||||||  ||||||||||||
Sbjct  415  TATCAAGTTAGGCTTGTTCCTATTCTCA-ACTTGATTTCCTTTCCTTTTTAAAGTTGTAT  473

Query  480  TACAT  484
            |||||
Sbjct  474  TACAT  478



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19611972746


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5