BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G10880.1
Length=2017
Score E
Sequences producing significant alignments: (Bits) Value
Ahg312133 jgi|Araly1|312133|fgenesh1_pm.C_scaffold_1000913 2765 0.0
> Ahg312133 jgi|Araly1|312133|fgenesh1_pm.C_scaffold_1000913
Length=1926
Score = 2765 bits (1497), Expect = 0.0
Identities = 1812/1958 (93%), Gaps = 45/1958 (2%)
Strand=Plus/Plus
Query 62 ATGAAGAAGCAAAAGATTACAACCTTTGTTA-AAGAACTCAACTTACGGATGAATTCGAA 120
|||||||||||||||||||||||||||| || |||||||||||||| | | | | |||
Sbjct 1 ATGAAGAAGCAAAAGATTACAACCTTTG-TACGAGAACTCAACTTAC-G--G-A-T-GAA 53
Query 121 GAAAGAACCGATAAGTCTCCGATACATTCACATCCTTGGCACCGTTGTCTTCTTCTCCTC 180
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||
Sbjct 54 GAAAGAACCGATAAGTCTCCGATACATTCACATCCTCGGCACCGTCGTCTTCTTCTCTTC 113
Query 181 TGTCTCCTCTCTCGTCATCCTCCTTGCTTTTTACCTTAACCAACGCCTCCAAACATCACT 240
||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 114 CGTCTCATCTCTCGTCATCCTCCTCGCTCTTTACCTTAACCAACGCCTCCAAACATCACT 173
Query 241 CTTCCTCGTCGAAGATTATCACActctctcctcaaatcctctcacttctccttccctctc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
Sbjct 174 CTTCCTCGTCGAAGATTATCACACTCTCTCCTCAAATCCTCTCACTTCTCCTT--C-C-C 229
Query 301 tcctcctccttctccttctcctcGCAGCTCTGGTAGTAATATTGCAGACGAAGAGCTGAT 360
| || || | | | |||||||||||||||||| | | | |||||||||||||||||
Sbjct 230 T-CT-CT-C--GT-C--CTCCTCGCAGCTCTGGTAATGACGTGGCAGACGAAGAGCTGAT 281
Query 361 GTGGCGAGCAGCGATGGCCCCACGCAGCCCCATGAAGAATGAGACCCATCCAAAGGTTGC 420
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 282 GTGGCGAGCAGCGATGGCCCCACGCAGCGCCATGATGAATGAGACCCATCCAAAGGTTGC 341
Query 421 GTTCATGTTTCTAACGAGGTGGAATTTGCCGTTGTCCCCTCTTTGGGAAATGTTCTTCAA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 342 GTTCATGTTTCTAACGAGGTGGAATTTGCCGTTGTCCCCTCTTTGGGAAATGTTCTTCAA 401
Query 481 AGGTCATGAAGGGTTTTATTCCATCTACGTTCATACCTCGCCGGAGTTCACT-CAAGAGC 539
||||||||||||||||||||||||||| ||||||||||| |||||||||||| || ||||
Sbjct 402 AGGTCATGAAGGGTTTTATTCCATCTATGTTCATACCTCCCCGGAGTTCACTGCA-GAGC 460
Query 540 CGCCGGAATCTTCAGTATTTTACAAGAAACGGATACCAAGCAAGGCCGTTGAATGGGGAA 599
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 461 CGCCGGAATCTTCAGTATTTTACAGGAAACGGATACCAAGCAAGGCCGTTGAATGGGGAA 520
Query 600 AAT-GTTCGATGATGGATGCAGAGAAGCGTCTTATATCTCATGCCCTACTAGAACCTTCC 658
||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 521 AATCGT-CGATGATGGATGCAGAGAAGCGTCTTTTATCTCATGCCCTACTAGAACCTTCC 579
Query 659 AACGCACGCTTCGTCCTCCTCTCCGAGACTTGTATCCCTCTCTTCAACTTCACCACAATC 718
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 580 AACGCACGCTTCGTCCTCCTCTCCGAGACTTGTATCCCTCTCTTCAACTTCACTACAATC 639
Query 719 TACACTTACCTCACGCGCTCCACTCGCTCTTTCCTCGGCTCATTCGACGACCCAAGGCCC 778
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 640 TACACTTACCTCACGCGTTCCACTCGCTCTTTCCTCGGCTCATTTGACGACCCAAGGCCC 699
Query 779 ATGGGCCGAGGCCGTTACACCCCTAAAATGCTCCCACACGTGTCGCTCTCTGACTGGCGG 838
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 700 ATGGGACGAGGCCGTTACACCCCTAAAATGCTCCCACACGTGTCGCTCTCTGATTGGCGG 759
Query 839 AAAGGAAACCAATGGTTCGAAATCTCACGTAGAGTCGCCGCCGAGATCGTCTCTGATCGC 898
||||||||||| ||||||||||| ||||||||||||||||||||||| ||||| ||||||
Sbjct 760 AAAGGAAACCAGTGGTTCGAAATTTCACGTAGAGTCGCCGCCGAGATTGTCTCCGATCGC 819
Query 899 CGGTACTACGCCGTCTTTAAGGATCACTGCCGACCGCCGTGTTATATCGACGAGCATTAT 958
||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 820 CGGTACTACGCAGTCTTTAAGGATCACTGCCGGCCGCCGTGTTACATCGACGAGCATTAC 879
Query 959 CTTCCGACGTTAGTTAACAAGATTTGTCCGGAGATGAATTCGAACCGGACAGTGACGTGG 1018
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 880 CTTCCGACGTTGGTTAACAAGATTTGTCCGGAGATGAATTCGAACCGGACAGTGACGTGG 939
Query 1019 GTTGATTGGTCAAGAGGTGGGTCCCATCCAGCGAGGTTTGTGAGGAAAGATATTCGGGTC 1078
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 940 GTTGATTGGTCAAGGGGTGGGTCCCATCCAGCGAGGTTTGTGAGGAAAGATATTCGAGTC 999
Query 1079 GGGTTCTTGGATCGGATCCGGTTCGGTTCGAATTGTAGCTACGAAGGTGAGGCTATGGAG 1138
||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 1000 GGGTTCTTGGACCGGATCCGGTTCGGGTCGAATTGTAGCTACGAAG---AGGCTATGGAG 1056
Query 1139 GTCGCAAAGATTGGAAGAAAGAAAACTAGTCGAAATGTAGGACATCATGATATTGTTGGA 1198
|| ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1057 GTTGCAAAGACCAGAAGAAAGAAAACTAGTCGAAATGTAGGACATCATGATCTTGTTGGA 1116
Query 1199 TCCAAGAGGAATCAATACCACTATGCGAAGTCAATAGAAGAGAACGAGAATATGGTAAAA 1258
|||||||||||||||||||||| | |||||||||||||||||| ||||| |||||| ||
Sbjct 1117 CCCAAGAGGAATCAATACCACTACGTGAAGTCAATAGAAGAGAATGAGAAGATGGTAGAA 1176
Query 1259 GAGATGCAACAACAAATGCTTCAAATCGACAAAGAAATCAGAGAGAAAACGTACATATCA 1318
|| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1177 GAAATGCAACAACAAATGCTTCAAATCGACAAAGAACTCAGAGAGAAAACGTACATATCA 1236
Query 1319 GGACTAGAATACAACTTGAACCATAGATGGAGACCGATTGAGGATTACCAGCCGATAGTG 1378
|||||||||||||||||||| |||||||||||||| |||||||||||| ||||| | |||
Sbjct 1237 GGACTAGAATACAACTTGAATCATAGATGGAGACCAATTGAGGATTACGAGCCGGTGGTG 1296
Query 1379 TACTTTCGATCAAAGTGCCCTGAGAAGATGGTGCTAGACAAACTAACTTTTGCTAACAAC 1438
| ||| ||||||| | ||| || || |||||||| ||||||||||||||||||||||||
Sbjct 1297 AATTTTGGATCAAATTTCCCCGATAAAATGGTGCTCGACAAACTAACTTTTGCTAACAAC 1356
Query 1439 GCATATCGTGACAAGAAGGCTGTTATATCATTTGCGTCTGGGGAACGAGAGATTAATATC 1498
||||||||||| |||||||||||| |||||||| |||||||||||||||| |||||||||
Sbjct 1357 GCATATCGTGATAAGAAGGCTGTTGTATCATTTTCGTCTGGGGAACGAGAAATTAATATC 1416
Query 1499 CATAATCTAAACCATCAGATGTTACACAATGCGCATTGTATGGATGGTGGTGAGAGACGC 1558
||||||||||||||||||||||||||||| |||||||| ||||| |||| ||||||||
Sbjct 1417 CATAATCTAAACCATCAGATGTTACACAAGGCGCATTGCATGGAAGGTG---AGAGACGC 1473
Query 1559 CTTCTTAAGATGCTGAATCCAAATAAGGATATCGACTCTGGTTCATCGCTTGCACAAGTT 1618
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1474 CTTCTTAAGATGCTGAATCCAAATAAGGATATCGACTCTGGTTTTTCGCTTGCACAAGTT 1533
Query 1619 GAAGAACA-G--AA-A--TGGCCATATTTAAATACCACAAGCACAATCACAATCGATGAA 1672
|||| ||| | || | |||||||||||||||| ||||||| ||| |||||||||||||
Sbjct 1534 GAAGTACAAGTTAAGAAATGGCCATATTTAAATAACACAAGCGCAAGCACAATCGATGAA 1593
Query 1673 GAAACATATAGTAGGAAGCAAAGGGAATTTGAATGTGAGAGAGATCAAGTGTTTGTTAAT 1732
||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||
Sbjct 1594 GAAACATATAGTAGGAAGCAAAGGGAACTTGAATGTGAGAGAGATAAAGTGTTTATTAAT 1653
Query 1733 GCTCCTTCTAAAGCCTCTCTGTGGAAA-TCGTTACCTTCTACCAAGGACTTACGCGACCA 1791
||||||||||||| ||||| ||||| | ||||||||||| |||||||||||| ||||
Sbjct 1654 TCTCCTTCTAAAGCTTCTCTATGGAAGCTA-TTACCTTCTACTAAGGACTTACGCAACCA 1712
Query 1792 GATTCAGGCAATGGAGTTaaaaggtgaacaaaagaggaagaaag-ttgtgggaagaagga 1850
|||||||||||||||| ||||||||||||||||| || ||||| |||||| ||||||||
Sbjct 1713 GATTCAGGCAATGGAGGCAAAAGGTGAACAAAAGAAGA-GAAAGGTTGTGGAAAGAAGGA 1771
Query 1851 agaagatagagtcaagggaaagaaagataaagaaaacagagaatgagattaagTCTATGA 1910
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1772 AGAAGATAGAATCAAGGGAAAGAAAGATAAAGAAGACAGAGAATGAGATTAAGTCTATGA 1831
Query 1911 GAAAGACT-ATGGAGAGGATTCTCAACAGAATGCACAAAGCTTTGGAAACCATTTCACAT 1969
|||| | | ||||||||||||| ||||| || |||||||||||||||||||||||||||
Sbjct 1832 GAAAAA-TGATGGAGAGGATTCACAACAAAAAACACAAAGCTTTGGAAACCATTTCACAT 1890
Query 1970 GAAAGGACTTGTTTAGAGAAGAAAATCACAATTCTATA 2007
|| ||| ||||||||||||| || |||||||||||||
Sbjct 1891 GAGAGGTCTTGTTTAGAGAA-AA--TCACAATTCTATA 1925
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75837677795
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5