BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G10890.1
Length=1254
Score E
Sequences producing significant alignments: (Bits) Value
Ahg312135 jgi|Araly1|312135|fgenesh1_pm.C_scaffold_1000915 1003 0.0
> Ahg312135 jgi|Araly1|312135|fgenesh1_pm.C_scaffold_1000915
Length=1782
Score = 1003 bits (543), Expect = 0.0
Identities = 665/719 (92%), Gaps = 28/719 (4%)
Strand=Plus/Plus
Query 314 CAGGCGAAAAAGTCGTTCTATTTCTCCTAGGCGCCATCGAAGTCGATCTGTTACTCCTAA 373
|||||| |||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 6 CAGGCGGAAAAGTCGCTCTATTTCTCCTAGGCGCCATCAAAGTCGATCTGTTACTCCTAA 65
Query 374 GAGACGTTCTCCAACCCCAAAACGTTACAAAAGACAAAAGAGTAGGAGTTCAACTCCATC 433
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 66 GAGACGTTCTCCAACCCCAAAACGTTACAAAAGACAAAAGAATAGGAGTTCAACTCCATC 125
Query 434 TCCTGCAAAAAGATCTCCCGCCGCAACCCTTGAGTCAGCCaaaaataggaatggagaaaa 493
|||||||||| ||||||| |||||||||||||||||||| ||| |||| |||||||||||
Sbjct 126 TCCTGCAAAAGGATCTCCTGCCGCAACCCTTGAGTCAGCTAAACATAGAAATGGAGAAAA 185
Query 494 acttaaaagagaagaggaagaacgaaaaagGCGACAGC-GTGAAGCAGAACTGAAGCTAA 552
||||||||||||||||||||| |||||||||||||||| | |||||||||||||||||||
Sbjct 186 ACTTAAAAGAGAAGAGGAAGAGCGAAAAAGGCGACAGCAG-GAAGCAGAACTGAAGCTAA 244
Query 553 TAGAGGAAGAAACTGTGAAACGGGTTGAAGAAGCTATTCGAAAGAAGGTCGAAGAAAGCT 612
|||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||||
Sbjct 245 TAGAGGAAGAAACTGTAAAACGGGTTGAAGAAGCTATTCGAAAAAAGGTCGTGGAAAGCT 304
Query 613 TACAGTCTGAGAAAATCAAAAT-GGAAATTCTAACGCTGTTGGAGGAAGGGCGAAAGAGA 671
|||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 305 TACAGTCTGAGAAAAT-AAAATTGGAAATTCTAACGCTGTTGGAGGAAGGTCGAAAGAGA 363
Query 672 CTTAATGAAGAAGTCGCGGCTCAACTTGAGGAGGAGAAAGAGGCTTCTCTTATTGAGGCT 731
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 364 CTTGATGAAGAAGTCGCGGCTCAACTTGAGAAGGAGAAAGAGGCTTCTCTTATTGAGGCT 423
Query 732 AAAGAAAAAGAGGGTGTTATGCGGTGTTTGTCACAGgaaagagagcaacaagagaaagaa 791
||||||||||||| | | || | ||| |||||||||||||||
Sbjct 424 AAAGAAAAAGAGG-----A-------------A-AG-A--GAG--CAACAAGAGAAAGAA 459
Query 792 gagagggagagaatagcagaggagaacctaaagagagtggaagaagctcagagaaaagaa 851
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 460 GAGAGTGAGAGAATAGCAGAGGAGAACCTTAAGAGAGTGGAAGAAGCTCAGAGAAAAGAA 519
Query 852 gCAATGGAGAGGCAAAGGAAAGAGGAGGAACGGTATCGAGAGCTAGAGGAGCTGCAACGA 911
|||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 520 GCAATGGAAAGGCAAAGGAAAGAGGAGGAACGGTATCGGGAGCTCGAGGAGCTGCAACGA 579
Query 912 CagaaagaagaagcgatgcgaaggaagaaagctgaagaggaagaagaaCGTCTCAAACAG 971
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 580 CAGAAAGAAGAAGCAATGCGAAGGAAGAAAGCGGAAGAGGAAGAAGAACGTCTCAAACAG 639
Query 972 ATGAAACTGTTGGGTAAAAACAAATCACGGCCTAAATTATCCTTTGCCTTAAGCTCCAA 1030
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 640 ATGAAACTGTTGGGTAAAAACAAATCACGCCCTAAATTATCTTTTGCCTTAAGCTCCAA 698
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46853064993
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5