BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G10940.2
Length=1791
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919903 jgi|Araly1|919903|scaffold_101184.1 1757 0.0
Ahg475237 jgi|Araly1|475237|fgenesh2_kg.2__367__AT1G60940.1 1064 0.0
Ahg951172 jgi|Araly1|951172|scaffold_803059.1 520 2e-146
> Ahg919903 jgi|Araly1|919903|scaffold_101184.1
Length=1137
Score = 1757 bits (951), Expect = 0.0
Identities = 1085/1145 (95%), Gaps = 27/1145 (2%)
Strand=Plus/Plus
Query 433 GCGAGAATGGACAAGTACGAGCTGGTGAAAGACATAGGTGCTGGGAATTTTGGAGTTGCC 492
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 17 GCGAGAATGGACAAGTACGAGCTGGTGAAAGACATAGGTGCTGGGAATTTCGGAGTGGCC 76
Query 493 AGGCTCATGAAGGTCAAAAACTCTAAGGAACTTGTTGCCATGAAGTACATCGAGCGTGGT 552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 77 AGGCTCATGAAGGTCAAAAACTCTAAGGAACTTGTTGCCATGAAGTACATCGAGCGTGGT 136
Query 553 CCTAAGATTGATGAGAATGTGGCAAGAGAGATCATTAATCACAGATCACTTCGCCATCCG 612
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 137 CCTAAGATTGATGAGAACGTGGCAAGAGAGATCATTAATCACAGATCACTTCGCCATCCG 196
Query 613 AATATAATCCGGTTCAAGGAGGTGGTGTTGACTCCAACCCATCTTGCCATTGCCATGGAA 672
|||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 197 AATATAATCCGGTTTAAGGAGGTTGTGTTGACTCCAACCCATCTTGCCATTGCTATGGAA 256
Query 673 TATGCTGCTGGTGGTGAACTATTCGAGCGTATATGCAGTGCTGGAAGATTTAGTGAGGAT 732
|||||||||||||||||||||||||||||||| ||||||||||||||| || | | | |
Sbjct 257 TATGCTGCTGGTGGTGAACTATTCGAGCGTATCTGCAGTGCTGGAAGA-TT--T-A-G-T 310
Query 733 GAGGAGGAAGGGAACAAGAGAAAACATGCGAGATATTTCTTCCAGCAGCTTATATCAGGT 792
||| | | ||| |||||||| |||||||| || ||||||||||||
Sbjct 311 ------GAA--G---ATGAG-------GCGAGATACTTCTTCCAACAACTTATATCAGGT 352
Query 793 GTTAGCTATTGCCATGCTATGCAAATATGCCATAGAGATCTGAAGCTCGAGAATACGCTC 852
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 353 GTTAGTTATTGCCATGCTATGCAAATATGCCACAGAGATCTGAAGCTCGAGAATACGCTC 412
Query 853 TTGGATGGAAGTCCTGCTCCACGTCTGAAAATCTGTGATTTTGGTTATTCCAAGTCCTCT 912
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 413 CTGGATGGAAGTCCTGCTCCACGTCTGAAAATCTGTGATTTTGGTTATTCCAAGTCCTCT 472
Query 913 CTGCTGCACTCTAGGCCCAAATCAACAGTTGGAACTCCAGCATATATTGCACCTGAGGTC 972
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 473 CTGCTGCACTCTAGGCCCAAATCAACAGTTGGAACTCCAGCGTATATTGCACCTGAGGTC 532
Query 973 CTTTCTCGAAGAGAATATGATGGCAAGATGGCTGATGTATGGTCTTGTGGTGTGACTCTT 1032
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 533 CTTTCTCGGAGAGAATATGATGGCAAGATGGCTGATGTATGGTCCTGTGGTGTGACTCTT 592
Query 1033 TATGTCATGCTGGTTGGAGCATACCCATTTGAAGACCAGGAAGACCCCAAGAACTTCAGG 1092
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 593 TATGTCATGCTGGTTGGAGCGTACCCATTTGAAGACCAGGAAGACCCCAAAAACTTCAGG 652
Query 1093 AAAACAATACAAAAAATAATGGCTGTCCAGTACAAGATCCCGGACTACGTCCATATCTCA 1152
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 653 AAAACAATACAAAAAATAATGGCTGTCCAGTACAAGATCCCGGACTACGTCCACATCTCA 712
Query 1153 CAGGATTGTAAAAATCTCCTTTCCCGTATATTTGTCGCCAATTCACTCAAGAGGATCACC 1212
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 713 CAGGATTGTAAACATCTCCTTTCCCGTATATTTGTCGCCAATTCACTCAAGAGGATAACC 772
Query 1213 ATTGCAGAAATCAAGAAACATTCATGGTTCCTAAAGAATTTGCCAAGGGAACTCACAGAG 1272
|||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||
Sbjct 773 ATTGCAGAAATCAAGAAACACCCATGGTTCCTGAAGAATTTGCCAAGAGAACTCACAGAG 832
Query 1273 ACAGCTCAAGCTGCATATTTCAAGAAAGAGAACCCAACCTTCTCCCTTCAGACCGTTGAA 1332
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 833 ACAGCTCAAGCTGCATATTTCAAGAAAGAGAACCCAACCTTCTCCCTCCAGACTGTTGAA 892
Query 1333 GAGATCATGAAGATAGTGGCTGACGCCAAAACACCGCCTCCTGTTTCCCGATCCATCGGA 1392
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 893 GAGATCATGAAGATAGTGGCTGACGCCAAAACACCGCCTCCTGTTTCCCGGTCCATCGGA 952
Query 1393 GGTTTTGGCTGGGGAGGAAATGGggatgcagatggaaaagaggaagatgcagaagacgtg 1452
||||||||||||||||||||||| |||| ||| ||||| |||||||||||||||||||||
Sbjct 953 GGTTTTGGCTGGGGAGGAAATGGAGATGTAGAGGGAAAGGAGGAAGATGCAGAAGACGTG 1012
Query 1453 gaggagg-a-a-gaggaggaggtggaagaagaggaagacgatgaggaTGAATACGATAAG 1509
||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1013 GAGGAGGAAGAGGAGGAGGAGGTGGAAGAAGAGGAAGACGATGAGGATGAATACGATAAG 1072
Query 1510 ACTGTAAAGGAAGTACACGCAAGTGGAGAAGTGAGAATAAGTTGATATTTTGGTTTTTGG 1569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1073 ACTGTAAAGGAAGTACACGCAAGTGGAGAAGTGAGAATAAGTTGATATTTTGGTTTTTGG 1132
Query 1570 TCTGT 1574
|||||
Sbjct 1133 TCTGT 1137
> Ahg475237 jgi|Araly1|475237|fgenesh2_kg.2__367__AT1G60940.1
Length=1585
Score = 1064 bits (576), Expect = 0.0
Identities = 871/1009 (86%), Gaps = 38/1009 (4%)
Strand=Plus/Plus
Query 438 AATGGACAAGTACGAGCTGGTGAAAGACATAGGTGCTGGGAATTTTGGAGTTGCCAGGCT 497
|||||||||||||||||| || |||||||| |||||||||||||||||||| || |||||
Sbjct 276 AATGGACAAGTACGAGCTTGTTAAAGACATCGGTGCTGGGAATTTTGGAGTGGCTAGGCT 335
Query 498 CATGAAG-GTCAAAAACTCTAAGGAACTTGTTGCCATGAAGTACATCGAGCGTGGTCCTA 556
|||| || ||||||||||| || ||||| ||||| |||||||||||||||||||| || |
Sbjct 336 CATG-AGAGTCAAAAACTCCAAAGAACTCGTTGCTATGAAGTACATCGAGCGTGGCCCAA 394
Query 557 AGATTGATGAGAATGTGGCAAGAGAGATCATTAATCACAGATCACTTCGCCATCCGAATA 616
||||||||||||| ||||| |||||||| |||||||| ||||||||||| ||||| ||||
Sbjct 395 AGATTGATGAGAACGTGGCGAGAGAGATTATTAATCATAGATCACTTCGTCATCCCAATA 454
Query 617 TAATCCGGTTCAAGGAGGTGGTGTTGACTCCAAC-C-CATCTTGCCATTGCCATGGAATA 674
|||||||||| ||||||||||| ||||| ||||| | |||| |||||||| |||||||
Sbjct 455 TAATCCGGTTTAAGGAGGTGGTTTTGACACCAACACACATC--GCCATTGCTATGGAATT 512
Query 675 TGCTGCTGGTGGTGAACTATTCGAGCGTATATGCAGTGCTGGAAGATTTAGTGAGGATGA 734
||||||||| ||||| |||| ||||||||||| |||||||||||||| |||||||||
Sbjct 513 TGCTGCTGGCGGTGAGTTATTTGAGCGTATATGTAGTGCTGGAAGATTCAGTGAGGAT-- 570
Query 735 GGAGGAAGGGAACAAGAGAAAACATGCGAGATATTTCTTCCAGCAGCTTATATCAGGTGT 794
| | || | | || || | ||| ||||||||||||||||| || ||
Sbjct 571 ----G-A-GG--C-A-AG-----AT-----A-CTTT-TTCCAGCAGCTTATATCTGGAGT 608
Query 795 TAGCTATTGCCATGCTATGCAAATATGCCATAGAGATCTGAAGCTCGAGAATACGCTCTT 854
||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 609 CAGCTATTGCCATGCTATGCAAATATGCCATAGAGATCTGAAGCTCGAAAATACCCTCTT 668
Query 855 GGATGGAAGTCCTGCTCCACGTCTGAAAATCTGTGATTTTGGTTATTCCAAGTCCTCTCT 914
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 669 GGATGGAAGTCCTGCTCCACGCCTGAAAATCTGTGATTTTGGTTATTCCAAGTCCTCACT 728
Query 915 GCTGCACTCTAGGCCCAAATCAACAGTTGGAACTCCAGCATATATTGCACCTGAGGTCCT 974
| ||||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 729 GTTGCACTCTATGCCCAAATCAACTGTTGGAACTCCAGCATATATTGCACCTGAGGTTCT 788
Query 975 TTCTCGAAGAGAATATGATGGCAAGATGGCTGATGTATGGTCTTGTGGTGTGACTCTTTA 1034
|||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 789 TTCTCGCGGAGAGTATGATGGCAAGATGGCTGATGTATGGTCTTGTGGTGTGACTCTTTA 848
Query 1035 TGTCATGCTGGTTGGAGCATACCCATTTGAAGACCAGGAAGACCCCAAGAACTTCAGGAA 1094
|||||||||||| ||||||||||||||||||||||| || || || || ||||||| ||
Sbjct 849 TGTCATGCTGGTGGGAGCATACCCATTTGAAGACCAAGAGGATCCTAAAAACTTCAAAAA 908
Query 1095 AACAATACAAAAAATAATGGCTGTCCAGTACAAGATCCCGGACTACGTCCATATCTCACA 1154
||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 909 AACAATACAAAGAATAATGGCTGTCAAGTACAAGATCCCGGACTATGTCCATATCTCACA 968
Query 1155 GGATTGTAAAAATCTCCTTTCCCGTATATTTGTCGCCAATTC-ACTCAAGAGGATCACCA 1213
||||| ||| ||||||| |||||||||||||||||||| || | | |||||||| | |
Sbjct 969 AGATTGCAAACATCTCCTCTCCCGTATATTTGTCGCCAACTCGAAT-AAGAGGATTAAGA 1027
Query 1214 TTGCAGAAATCAAGAAACATTCATGGTTCCTAAAGAATTTGCCAAGGGAACTCACAGAGA 1273
| || || |||||||||||| |||||||||||||||| ||||||||||||| ||||| |
Sbjct 1028 TAGCTGAGATCAAGAAACATCCATGGTTCCTAAAGAACCTGCCAAGGGAACTTACAGAAA 1087
Query 1274 CAGCTCAAGCTGCATATTTCAAG-AAAGAGAACCCAACCTTCTCCCTTCAGACCGTTGAA 1332
|||||||||||| ||| |||| | ||||||||||| || ||||| || || | || |||
Sbjct 1088 CAGCTCAAGCTGTATACTTCA-GTAAAGAGAACCCGACATTCTCGCTCCAAAGTGTCGAA 1146
Query 1333 GAGATCATGAAGATAGTGGCTGACGCCAAAACACC-GCCTCCTGTTTCCCGATCCATCGG 1391
|||||||||||||| |||| || || ||||| || || ||||||||| ||||| || ||
Sbjct 1147 GAGATCATGAAGATTGTGGAAGAGGCAAAAACTCCAGC-TCCTGTTTCTCGATCGATTGG 1205
Query 1392 AGGTTTTGGCTGGGGAGGA-AATGGggatgcagatggaaaagaggaaga 1439
|| ||||| ||||||||| || | ||||| || || | ||||||||
Sbjct 1206 AGCATTTGGGTGGGGAGGAGAA-GAAGATGCCGAGGGCATGGAGGAAGA 1253
> Ahg951172 jgi|Araly1|951172|scaffold_803059.1
Length=1111
Score = 520 bits (281), Expect = 2e-146
Identities = 721/927 (78%), Gaps = 55/927 (6%)
Strand=Plus/Plus
Query 436 AGA-ATGGACAAGTACGAGCTGGTGAAAGACATAGGTGCTGGGAATTTTGGAGTTGC-CA 493
||| ||||| ||||| ||| | ||||| || | || |||||||||||||| || || |
Sbjct 17 AGAGATGGATAAGTATGAGGTTGTGAAGGATTTGGGAGCTGGGAATTTTGGTGTGGCTC- 75
Query 494 GGC-TCATGAAGGTCA-AAA-ACTCTAAGGAACTTGTTGCCATGAAGTACATCGAGCGTG 550
| | || | | | || ||| | |||| ||||| ||||||||||| || || ||| | |
Sbjct 76 GTCTTC-T-TA-GACACAAAGAGACTAAAGAACTCGTTGCCATGAAATATATTGAGAGAG 132
Query 551 GTC-CTAAGATTGATGAGAATGTGGCAAGAGAGATCATTAATCACAGATCACTTCGCCAT 609
||| | ||||||||||||||||| || |||||||| || ||||| ||||||||| | |||
Sbjct 133 GTCGC-AAGATTGATGAGAATGTTGCGAGAGAGATTATCAATCATAGATCACTTAGGCAT 191
Query 610 CCGAATATAATCCGGTTCAAGGAGGTGGTGT-TGACTCCAACCCATCTTGCCATTGCCAT 668
|| ||||| ||| | |||||||||||||| | |||||||||| |||||||| |||| ||
Sbjct 192 CCTAATATCATCAGATTCAAGGAGGTGGT-TCTGACTCCAACTCATCTTGCTATTGTAAT 250
Query 669 GGAATATGCTGCTGGTGGTGAACTATTCGAGCGTATATGCAGTGCTGGAAGATTTAGTGA 728
|||||||||| |||| || || || || || | || || | |||||| ||| | | |
Sbjct 251 GGAATATGCTTCTGGAGGAGAGCTCTTTGAAAGAATCTGTAATGCTGGTAGA--T--TCA 306
Query 729 GGATGAGGAGGAAGGGAACAAGAGAAAACATGCGAGATATTTCTTCCAGCAGCTT-ATAT 787
| | ||| | | ||| || ||||| ||||| |||||| || || |
Sbjct 307 -G-T------GAA--G--C-TGAG-------GCTAGATACTTCTTTCAGCAG-TTGATTT 345
Query 788 CAGGTGTTAG-CTATTGCCATGCTA-TGCAAATATGCCATAGAGATCTGAAGCTCGAGAA 845
|| | | | || || ||| | | |||||||||| ||||||||| ||||||| |||||
Sbjct 346 GTGGCG-TGGATTACTGTCATTC-ACTGCAAATATGTCATAGAGATTTGAAGCTTGAGAA 403
Query 846 TACGCT-CTTGGATGGAAGTCCTGCTCCACGTCTGAAAATCTGTGATTTTGGTTATTCCA 904
|| || ||| ||||| || ||||| || | |||||||||||||||||||||||| ||||
Sbjct 404 CACACTGCTT-GATGGTAGCCCTGCCCCGCTTCTGAAAATCTGTGATTTTGGTTACTCCA 462
Query 905 AGTCCTCTCTGCTGCACTCTAGGCCCAAATCAACAGTTGGAACTCCAGCATATATTGCAC 964
|||| |||||||| |||||||| || |||||||| ||||| |||||||| || || ||||
Sbjct 463 AGTCATCTCTGCTTCACTCTAGACCTAAATCAACTGTTGGGACTCCAGCTTACATCGCAC 522
Query 965 CTGAGGTCCTTTCTCGAAGAGAATATGATGGCAAG-ATGGCTGATGTATGGTCTTGTGGT 1023
|||| || ||||| |||||||||||||| || ||| || || ||||| ||||| ||||||
Sbjct 523 CTGAAGTTCTTTCCCGAAGAGAATATGACGGAAAGCAT-GCGGATGTTTGGTCCTGTGGT 581
Query 1024 GTGACTCTTTATGTCATGCTGGTTGGAGCATACCCATTTGAAGACCAGGAAGACCCCAAG 1083
|||||||||||||| ||| ||||||||| || || |||||||||| || || || ||
Sbjct 582 GTGACTCTTTATGTGATGTTGGTTGGAGGTTATCCGTTTGAAGACCCCGATGA-TCCGAG 640
Query 1084 -AACTTCAGGAAAACAATACAAAAAATAATGGCTGTCCAGTACAAGATCCCGGACTACGT 1142
||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||||
Sbjct 641 AAACTTCAGGAAAACAATCCAACGTATAATGGCTGTCCAGTACAAGATCCCGGATTACGT 700
Query 1143 CCATATCTCACAGGATTGTAAAAATCTCCTTTCCCGTATATTTGTCGCCAATTCA-CTCA 1201
|| || || ||||| |||||| | || || || || ||||||||| | |||||| || |
Sbjct 701 TCACATATCGCAGGAGTGTAAACACCTTCTCTCTCGCATATTTGTCACTAATTCAGCT-A 759
Query 1202 AGAGGATCAC-CATTGCAGAAATCAAGAAACATTCATGGTTCCTAAAGAATTTGCCAAGG 1260
|||| ||||| | || ||| |||||||| ||| |||||| | ||||||| ||||||| |
Sbjct 760 AGAGAATCACAC-TTAAAGAGATCAAGAAGCATCCATGGTACTTAAAGAACTTGCCAAAG 818
Query 1261 GAACTCACAGAGACAGCTCAAGCTGCATATTTCAAGAAAGAGAACC-CAACCTTCTCCCT 1319
|| || |||||| | |||||||| || || | ||||| ||| |||| | | ||| |||||
Sbjct 819 GAGCTTACAGAGTCTGCTCAAGCAGCGTACTACAAGAGAGA-AACCACGAGCTTTTCCCT 877
Query 1320 TCAGACCGTTGAAGAGATCATGAAGAT 1346
|| | ||| || || || ||||||||
Sbjct 878 CCAAAGCGTAGAGGACATAATGAAGAT 904
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67229282425
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5