BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G10960.1
Length=654
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471234 jgi|Araly1|471234|fgenesh2_kg.1__1188__AT1G10960.1 1007 0.0
Ahg909433 jgi|Araly1|909433|Al_scaffold_0002_2514 128 5e-29
> Ahg471234 jgi|Araly1|471234|fgenesh2_kg.1__1188__AT1G10960.1
Length=654
Score = 1007 bits (545), Expect = 0.0
Identities = 623/659 (95%), Gaps = 12/659 (2%)
Strand=Plus/Plus
Query 3 CATTTTCACAAAGCCACACCAACTCACTCACAAAATCTGTAG----A--ATCATCTTTCA 56
|||||||||||||||||| | || ||||||| ||||||||| | |||||||||||
Sbjct 1 CATTTTCACAAAGCCACA-C--CT-ACTCACAGAATCTGTAGAATCATCATCATCTTTCA 56
Query 57 ACAATGGCTTCCACTGCTCTCTCCAGCGCAATCGTAAGCACCTCTTTCCTCCGCCGTCAA 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 57 ACAATGGCTTCCACTGCTCTCTCCAGCGCAATCGTAAGCACCTCTTTCCTCCGCCGTCAA 116
Query 117 CAGACACCAATCAGCCTCAGATCCCTCCCGTTTGCCAACACACAATCTCTCTTCGGCCTC 176
||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||
Sbjct 117 CAGACACCAATCAGCCTCAGATCTCTCCCGTTGGCCAACACACAATCTATCTTCGGCCTC 176
Query 177 AAATCTTCCACCGCTCGCGGCGGCCGCGTCACGGCCATGGCTACCTACAAGGTCAAGTTC 236
||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 177 AAATCCTCCACCGCTCGCGGCGGCCGCATCACTGCCATGGCTACCTACAAGGTCAAGTTC 236
Query 237 ATCACACCTGAGGGAGAACAAGAGGTCGAATGCGAAGAAGATGTCTACGTCCTCGACGCT 296
||||||||||||||||||||||| || || || |||||||||||||||||||||||||||
Sbjct 237 ATCACACCTGAGGGAGAACAAGAAGTGGAGTGTGAAGAAGATGTCTACGTCCTCGACGCT 296
Query 297 GCTGAGGAAGCCGGACTCGACTTGCCCTACTCATGCCGTGCCGGTTCTTGCTCAAGTTGC 356
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 297 GCTGAGGAAGCCGGAATCGACTTGCCGTACTCATGCCGTGCCGGTTCTTGCTCAAGTTGC 356
Query 357 GCCGGGAAAGTCGTCTCTGGTTCTATTGACCAGTCGGACCAGAGCTTCTTAGACGATGAA 416
|||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||
Sbjct 357 GCCGGGAAAGTCGTCTCTGGCTCCATTGACCAGTCGGAACAGAGCTTCTTAGACGATGAC 416
Query 417 CAGATGAGTGAGGGCTATGTCTTGACCTGTGTGGCTTATCCGACTTCTGATGTCGTCATC 476
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 CAGATGAGCGAAGGCTATGTCTTGACCTGTGTGGCTTATCCGACTTCTGATGTCGTCATC 476
Query 477 GAAACCCACAAAGAAGAAGCCATTATGTAAAAT-TTTAAAGCTTTTTGATGAATTTCATC 535
||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||
Sbjct 477 GAAACCCACAAAGAAGAAGCCATTATGTAAAATGTTTAA-GCTTCTTGATGAATTTCATT 535
Query 536 AAAAGAGAAATTACTTGATGTTTAAGTCATCTCTCTTGTTACTTCGCTAATGTTGCCCTA 595
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 AAAAGAGAAATAACTTGATGTTTAAGTCATCTCTCTTGTTACTTCGCTAATGTTGCCCTA 595
Query 596 ATTTGGCTCATCCTTTTATAAGATCAATCAATAATAACAAATTTCAATGTTTTGTTCTT 654
|||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 596 ATTTGGCTCATCCTTTTAAAAGATCAATCAATAATAACCAATTTCAATGTTTTGTTCTT 654
> Ahg909433 jgi|Araly1|909433|Al_scaffold_0002_2514
Length=474
Score = 128 bits (69), Expect = 5e-29
Identities = 99/113 (88%), Gaps = 3/113 (3%)
Strand=Plus/Minus
Query 98 CTCTTTCCTCCGCCGTCAAC-AGACACCAA-TCAGCCTCAGATCCCTCCCGTTTGCCAAC 155
|||||| || | |||||||| | | || || | | || ||||||||||||||| ||||||
Sbjct 118 CTCTTTTCTTCACCGTCAACAAAAAACAAAGT-AACCCCAGATCCCTCCCGTTGGCCAAC 60
Query 156 ACACAATCTCTCTTCGGCCTCAAATCTTCCACCGCTCGCGGCGGCCGCGTCAC 208
||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 59 ACACAATCTCTCTTCGGCCTCAAATCTTCCACCGCACACGGCGGCCGCGTCAC 7
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23979314793
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5