BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G10960.1 Length=654 Score E Sequences producing significant alignments: (Bits) Value Ahg471234 jgi|Araly1|471234|fgenesh2_kg.1__1188__AT1G10960.1 1007 0.0 Ahg909433 jgi|Araly1|909433|Al_scaffold_0002_2514 128 5e-29 > Ahg471234 jgi|Araly1|471234|fgenesh2_kg.1__1188__AT1G10960.1 Length=654 Score = 1007 bits (545), Expect = 0.0 Identities = 623/659 (95%), Gaps = 12/659 (2%) Strand=Plus/Plus Query 3 CATTTTCACAAAGCCACACCAACTCACTCACAAAATCTGTAG----A--ATCATCTTTCA 56 |||||||||||||||||| | || ||||||| ||||||||| | ||||||||||| Sbjct 1 CATTTTCACAAAGCCACA-C--CT-ACTCACAGAATCTGTAGAATCATCATCATCTTTCA 56 Query 57 ACAATGGCTTCCACTGCTCTCTCCAGCGCAATCGTAAGCACCTCTTTCCTCCGCCGTCAA 116 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 57 ACAATGGCTTCCACTGCTCTCTCCAGCGCAATCGTAAGCACCTCTTTCCTCCGCCGTCAA 116 Query 117 CAGACACCAATCAGCCTCAGATCCCTCCCGTTTGCCAACACACAATCTCTCTTCGGCCTC 176 ||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||| Sbjct 117 CAGACACCAATCAGCCTCAGATCTCTCCCGTTGGCCAACACACAATCTATCTTCGGCCTC 176 Query 177 AAATCTTCCACCGCTCGCGGCGGCCGCGTCACGGCCATGGCTACCTACAAGGTCAAGTTC 236 ||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||| Sbjct 177 AAATCCTCCACCGCTCGCGGCGGCCGCATCACTGCCATGGCTACCTACAAGGTCAAGTTC 236 Query 237 ATCACACCTGAGGGAGAACAAGAGGTCGAATGCGAAGAAGATGTCTACGTCCTCGACGCT 296 ||||||||||||||||||||||| || || || ||||||||||||||||||||||||||| Sbjct 237 ATCACACCTGAGGGAGAACAAGAAGTGGAGTGTGAAGAAGATGTCTACGTCCTCGACGCT 296 Query 297 GCTGAGGAAGCCGGACTCGACTTGCCCTACTCATGCCGTGCCGGTTCTTGCTCAAGTTGC 356 ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| Sbjct 297 GCTGAGGAAGCCGGAATCGACTTGCCGTACTCATGCCGTGCCGGTTCTTGCTCAAGTTGC 356 Query 357 GCCGGGAAAGTCGTCTCTGGTTCTATTGACCAGTCGGACCAGAGCTTCTTAGACGATGAA 416 |||||||||||||||||||| || |||||||||||||| |||||||||||||||||||| Sbjct 357 GCCGGGAAAGTCGTCTCTGGCTCCATTGACCAGTCGGAACAGAGCTTCTTAGACGATGAC 416 Query 417 CAGATGAGTGAGGGCTATGTCTTGACCTGTGTGGCTTATCCGACTTCTGATGTCGTCATC 476 |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 417 CAGATGAGCGAAGGCTATGTCTTGACCTGTGTGGCTTATCCGACTTCTGATGTCGTCATC 476 Query 477 GAAACCCACAAAGAAGAAGCCATTATGTAAAAT-TTTAAAGCTTTTTGATGAATTTCATC 535 ||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||||| Sbjct 477 GAAACCCACAAAGAAGAAGCCATTATGTAAAATGTTTAA-GCTTCTTGATGAATTTCATT 535 Query 536 AAAAGAGAAATTACTTGATGTTTAAGTCATCTCTCTTGTTACTTCGCTAATGTTGCCCTA 595 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 536 AAAAGAGAAATAACTTGATGTTTAAGTCATCTCTCTTGTTACTTCGCTAATGTTGCCCTA 595 Query 596 ATTTGGCTCATCCTTTTATAAGATCAATCAATAATAACAAATTTCAATGTTTTGTTCTT 654 |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| Sbjct 596 ATTTGGCTCATCCTTTTAAAAGATCAATCAATAATAACCAATTTCAATGTTTTGTTCTT 654 > Ahg909433 jgi|Araly1|909433|Al_scaffold_0002_2514 Length=474 Score = 128 bits (69), Expect = 5e-29 Identities = 99/113 (88%), Gaps = 3/113 (3%) Strand=Plus/Minus Query 98 CTCTTTCCTCCGCCGTCAAC-AGACACCAA-TCAGCCTCAGATCCCTCCCGTTTGCCAAC 155 |||||| || | |||||||| | | || || | | || ||||||||||||||| |||||| Sbjct 118 CTCTTTTCTTCACCGTCAACAAAAAACAAAGT-AACCCCAGATCCCTCCCGTTGGCCAAC 60 Query 156 ACACAATCTCTCTTCGGCCTCAAATCTTCCACCGCTCGCGGCGGCCGCGTCAC 208 ||||||||||||||||||||||||||||||||||| | ||||||||||||||| Sbjct 59 ACACAATCTCTCTTCGGCCTCAAATCTTCCACCGCACACGGCGGCCGCGTCAC 7 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23979314793 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5